Are coffee agroforestry systems suitable for circa situm conservation of indigenous trees? A case study from Central Kenya

Coffee agroforestry systems (CAFS) are often considered to be species-rich, potentially contributing to the conservation of indigenous trees. To investigate the conservation capacity of a Kenyan CAFS, all tree species on 62 smallholder coffee farms (covering 39 ha in total) in the Aberdare Mountains of Central Kenya were recorded. In total, 6,642 trees of 59 species were enumerated, with a mean density of 256 trees per ha and a mean species richness of 11.2 species per farm. Indigenous species represented 63 % of the richness but only 31 % of the abundance. For individual farms, as expected, farm size had a positive correlation with tree species richness, but more interestingly there was a negative correlation with tree density. Cluster analysis based on densities of the 18 most important species (defined by an importance value index) revealed two groups of farms: one cluster represented small farms (mean size = 0.4 ha) with high tree species diversity and individual density, particularly of indigenous trees; the other cluster represented large (mean size = 1 ha) and less diverse farms with low tree densities, particularly regarding indigenous species. Tree individuals were unevenly distributed within farms, being more frequent in living fences (38 % of all individuals), the garden zone (20 %) and in coffee plots (18 %). The relative occurrence of indigenous species was also uneven, being greater in living fences and the garden zone. Most adult trees (83 %) were planted, but only 46 % of seedlings were, revealing the active removal of volunteer seedlings by farmers as trees mature. Surveyed coffee farms harboured 20 % of the 135 tree species of the potential natural vegetation for the region, but only 3.6 % of the on-farm tree individuals belonged to the most valuable types of dominant and forest vegetation. Thus, although a source of significant tree cover and heterogeneity at landscape level, the value of these CAFS as circa situm reservoirs of forest tree species is questionable.     

Insights into regional patterns of Amazonian forest structure,diversity, and dominance from three large terra-firme forest dynamics plots

We analyze forest structure, diversity, and dominance in three large-scale Amazonian forest dynamics plots located in Northwestern (Yasuni and Amacayacu) and central (Manaus) Amazonia, to evaluate their consistency with prevailing wisdom regarding geographic variation and the shape of species abundance distributions, and to assess the robustness of among-site patterns to plot area, minimum tree size, and treatment of morphospecies. We utilized data for 441,088 trees (DBH ≥1 cm) in three 25-ha forest dynamics plots. Manaus had significantly higher biomass and mean wood density than Yasuni and Amacayacu. At the 1-ha scale, species richness averaged 649 for trees ≥1 cm DBH, and was lower in Amacayacu than in Manaus or Yasuni; however, at the 25-ha scale the rankings shifted, with Yasuni < Amacayacu < Manaus. Within each site, Fisher’s alpha initially increased with plot area to 1–10 ha, and then showed divergent patterns at larger areas depending on the site and minimum size. Abundance distributions were better fit by lognormal than by logseries distributions. Results were robust to the treatment of morphospecies. Overall, regional patterns in Amazonian tree species diversity vary with the spatial scale of analysis and the minimum tree size. The minimum area to capture local diversity is 2 ha for trees ≥1 cm DBH, or 10 ha for trees ≥10 cm DBH. The underlying species abundance distribution for Amazonian tree communities is lognormal, consistent with the idea that the rarest species have not yet been sampled. Enhanced sampling intensity is needed to fill the still large voids we have in plant diversity in Amazon forests.     

Do biogeographic parameters matter? Plant species richness and distribution of macrophytes in relation to area and isolation of ponds in NW Polish agricultural landscape

Effects of pond size and isolation on total vascular plant species richness and number of obligate wetland species were compared. Subsequently, the potential for the presence of spatial patterns in wetland species distribution among ponds in an agricultural landscape was explored. Relationships between species richness and two main biogeographic parameters were analysed using simple and multiple linearised regression models. Spatial patterns were looked for by means of analyses carried out with the R CRAN software (join-count statistics). Simple regression analyses performed on the regional scale (n = 50) revealed the significance of the effect of pond size only (r = 0.46 for total plant species richness and r = 0.28 for wetland species richness vs. pond area). Further analyses conducted on the local scale identified the best multiple regression models in the largest pond cluster (n = 20); the models showed statistical significance of relationships between the species richness and both independent variables (r = 0.80 for total plant species richness and r = 0.70 for wetland species richness vs. pond area and isolation, including mean distance to the nearest ten ponds). Spatial analyses were performed for 26 obligate wetland species selected from 149 species recorded in all the 50 ponds. Exploratory spatial data analysis revealed the presence of significant positive spatial autocorrelation in the distribution of 8 species. In such cases, it is possible to reject the random distribution hypothesis, which justifies exploration of spatial regimes. In practice, correct spatial model specifications may have implications for predicting species occurrences under changing environmental conditions, e.g. changes in the number of ponds.     

Tree Species Composition, Structure, and Aboveground Wood Biomass of a Riparian Forest of the Lower Miranda River, Southern Pantanal, Brazil

The aboveground wood biomass (AWB) of tropical forests plays an important role in the global carbon cycle, and local AWB estimates provide essential data that enable the extrapolation of biomass stocks to ecosystem or biome-wide carbon cycle modelling. Few AWB estimates exist in Neotropical freshwater floodplains, where tree species distribution and forest structure depend on the height and duration of periodic inundations. We investigated tree species composition, forest structure, wood specific gravity, and AWB of trees ≥10 cm dbh in 16 plots totalling an area of 1 ha in a seasonally inundated riparian forest of the lower Miranda River, southern Pantanal, Brazil. The 443 tree individuals belonged to 46 species. Four species (Inga vera, Ocotea suaveolens, Tabebuia heptaphylla and Cecropia pachystachya) comprised more than 50% of the Total Importance Values (TIV), and floristic similarities between the plots averaged 38%. Although we detected an overall increase in species diversity correlated with decreasing flood levels, the most important tree species had almost identical distribution patterns along the flooding gradient. The stand basal area per plot (±?s.d.) amounted to 3.0?±?1.1 m² (47.8?±?18.1 m²/ha), and the tree heights averaged 10.9?±?1.4 m. Multiplying the individual basal areas by individual tree heights and a form factor of 0.6, we estimated the aboveground wood volume (AWV) for each individual, and for each plot (24.4?±?11.7 m³, 391.1?±?188 m³/ha). Wood specific gravity (SG) varied between 0.39 g/cm³ (Cecropia pachystachya) and 0.87 g/cm³ (Tabebuia heptaphylla), with a stand level average of 0.63?±?0.12 g/cm³. Multiplying the individual AWV with species SG, we estimated the plot AWB to be 16.2?±?6.4 Mg (259.4?±?102 Mg/ha). This value is comparable to that reported for late-successional forest stands of Amazonian floodplain forests, and it is close to the worldwide tropical average AWB. Because tree heights in the present forest were comparatively low when compared to other Neotropical forests, we found that resprouting of stems accounted for comparatively high basal areas. We argue that stem resprouting is an adaptation of tree species originating in non-flooded Cerrado to the seasonal inundations of riparian forests.     

Spider communities in urban green patches and their relation to local and landscape traits

Urbanization and urban landscape characteristics greatly alter plant and animal species richness and abundances in negative and positive directions. Spiders are top predators, often considered to be sensitive to habitat alteration. Studies in urban environments frequently focus on ground-dwelling spiders or on spiders in built structures, leaving aside foliage spiders. Effects of habitat, landscape type and structure and local characteristics on spider species composition, richness and relative abundance were evaluated in urban green patches in a temperate city of South America. We also assess whether Salticidae could be an indicator group for the broader spider community in the urban environment. Spiders were sampled with a G-VAC (aspirator) in urban green patches in Córdoba city, Argentina, in urban, suburban and exurban habitats (18 sites; six per habitat) and local and landscape traits were assessed. Overall, the exurban was richer than the urban habitat, however, at the site level Salticidae richness and abundance (but not the total spider assemblage) were significantly lower in urban sites. Species composition moderately differed between urban and exurban sites. Results indicate that on urban green spaces a low impervious surface cover, a coverage of trees, herbaceous vegetation and a vertical structure of vegetation at least up to 1 m in height contribute to higher richness and abundance of spiders, Salticidae being more sensitive than the overall spider community to local effects. In addition, Salticidae richness can predict 74% of the total spider richness recorded and may be used as spider diversity bio-indicators in this climatic region.     

Birds at the urban fringe: avian community shifts in different peri-urban ecotones of a megacity

Cities can be regionalized in intra-urban and peri-urban areas. The space between urban areas and adjacent systems represents an ecological transition that often acts as a semi-permeable biological filter. In this study, we assessed changes in avian community species richness, density, and composition at different peri-urban ecotones (i.e., urban-croplands, urban-grasslands, urban-shrublands) of northeastern Mexico City. Species richness was lower in the urban component of urban-grassland and urban-shrubland ecotones, while bird densities were higher in the urban components of the urban-grassland and urban-shrubland peri-urban ecotones, mainly due to the high number of urban exploiter species. However, the urban-cropland peri-urban ecotone exhibited a different pattern, with similar low bird species richness and density values between both components (urban and non-urban). A species composition analysis revealed that urban bird communities were not influenced by adjacent non-urban habitats, since the urban components of peri-urban ecotones were more similar among them than in relation to the rest of non-urban components. In summary, results of this study show that urbanization can represent an important biological filter for birds, often reducing species richness and homogenizing avian communities at local scales. As the environmental variables determining ecological processes related to the semi-permeable filter effect that urban areas pose to biodiversity might depend on urban habitats, regions, and spatial scales, further studies are needed to fully understand this phenomenon.     

Constant tree species richness along an elevational gradient of Mt. Bokor,a table-shaped mountain in southwestern Cambodia

Some previous studies along an elevational gradient on a tropical mountain documented that plant species richness decreases with increasing elevation. However, most of studies did not attempt to standardize the amount of sampling effort. In this paper, we employed a standardized sampling effort to study tree species richness along an elevational gradient on Mt. Bokor, a table-shaped mountain in southwestern Cambodia, and examined relationships between tree species richness and environmental factors. We used two methods to record tree species richness: first, we recorded trees taller than 4 m in 20 uniform plots (5 × 100 m) placed at 266–1048-m elevation; and second, we collected specimens along an elevational gradient from 200 to 1048 m. For both datasets, we applied rarefaction and a Chao1 estimator to standardize the sampling efforts. A generalized linear model (GLM) was used to test the relationship of species richness with elevation. We recorded 308 tree species from 20 plots and 389 tree species from the general collections. Species richness observed in 20 plots had a weak but non-significant correlation with elevation. Species richness estimated by rarefaction or Chao1 from both data sets also showed no significant correlations with elevation. Unlike many previous studies, tree species richness was nearly constant along the elevational gradient of Mt. Bokor where temperature and precipitation are expected to vary. We suggest that the table-shaped landscape of Mt. Bokor, where elevational interval areas do not significantly change between 200 and 900 m, may be a determinant of this constant species richness.     

Drivers of Central European urban land snail faunas: the role of climate and local species pool in the representation of native and non-native species

The importance of macroclimate and dispersal limitation in the broad-scale variation of European urban land snail assemblages is likely to differ between native and non-native species because of the southern origin of many non-native snails, often spread by humans. We sampled land snails in each of 32 European cities and compiled from the literature a list of land snail species reported from the surroundings of each city. To quantify the predictive power of climate and local species pools, beta-sim dissimilarity matrices of both native and non-native species were explored using MDS and RDA ordination methods, Mantel tests with bootstrapping of each dataset, and multivariate homogeneity analysis of group variances. We observed no significant relation between the numbers of non-native species found in the cities and their surroundings (p > 0.133), while the percentage of native species in the cities derived from their local species pools decreased significantly with the increasing species richness of local faunas (r_S = ?0.75, p < 0.001). Assemblage variation of urban native species was explained mostly by the difference between mean January and July temperatures (21.3 %), with the major role of July temperature (18.0 %). In contrast, variation of non-native species assemblages was mainly explained by January temperature (19.9 %). The congruence in faunal similarities between the cities and the surrounding areas was higher in native (r = 0.46, p < 0.001) than in non-native species (r = 0.36, p < 0.001). Overall native faunas were significantly more homogeneous than the non-native faunas. Our results suggest that recent climate warming may foster geographical expansions of many non-native land snail species as their distributions are controlled mainly by January temperature.     

Seedling assemblages and the alternative successional pathways experienced by Atlantic forest fragments

Background: Habitat loss and fragmentation have been argued to drastically alter the composition of tree assemblages inhabiting small forest fragments but the successional trajectory experienced by such edge-affected habitats remains controversial.

Aims: Here we examine whether small fragments (3.4–91.2 ha) support seedling assemblages more similar to those in 10–70-year-old secondary forests than to those in mature forests, in order to infer to what extent fragments move toward early successional systems.

Methods: Using 59 0.1-ha plots distributed in a fragmented landscape of Brazilian Atlantic forest, we evaluated species richness and functional and taxonomic composition of seedling assemblages in 20 small forest fragments, 19 stands of secondary forest and 20 stands of mature forests in the interior of an exceptionally large fragment (ca. 3500 ha).

Results: Small fragments presented the least species-rich seedling assemblages (17.2 ± 5.7 species), followed by secondary (22.5 ± 5.3), and mature forest (28.4 ± 5.3). Small fragments had seedling assemblages with functional and taxonomic composition more similar to those in secondary than in mature forest. Small fragments had a greater relative richness and abundance of pioneer trees (ca. 40% more), vertebrate-dispersed (6–25%), and those bearing medium-sized seeds (30–70%), while large-seeded species and individuals were reduced (>50% decrement) in comparison to seedling assemblages in mature forest.

Conclusions: By comparing seedlings across a wide range of successional habitats we offer evidence that small forest fragments are experiencing an alternative successional pathway towards an early-successional system with reduced plant diversity.     

Warm-temperate, immense, and sprawling: plant diversity drivers in urban Beijing, China

Urbanization is one of the most environmentally damaging of human activities, producing large alterations in ecosystem structure, function, species composition and interactions. In this study, we performed a systematic investigation of the plant species richness and density in the city of Beijing, China. We also assessed which socio-economic factors have most influence on plant diversity. Within the city, we found 551 plant species of 313 genera and 103 families, of which 118 were trees, 99 shrubs, and 296 herbs. Nearly half (48.3?%) of the total plant species were aliens. Species richness and density were positively correlated both for tree/shrub and herb taxa, which indicate that although some species predominate in our study area, there is an important array of species in relation to their densities. As expected, most of the socio-economic variables studied showed to be related to at least one of the four plant diversity variables (i.e., herb richness, herb density, tree/shrub richness, and tree/shrub density). Land-use showed a significant relationship in all four cases, which generally had lower values in cultural and education areas (areas that in Beijing are generally characterized by large extensions of urbanized land). The year of establishment was also largely related to plant diversity, with higher values for recently developed areas. This was an expected result given the dynamics of the urban development of Beijing during the last 60?years, which consisted of intense urban sprawling, followed by more environmentally-friendly urbanization practices during the 2000s related to the greening of the city for the olympic games. This dynamics also explained the negative relationship found between the distance to the city center and both tree/shrub species richness and density.     

The role of the soil seed and seedling bank in the regeneration of diverse plant communities in the subtropical Ailao Mountains,Southwest China

We compared species composition and diversity of the soil seed and seedling banks in three secondary vegetation types (shrubland, Populus bonatii forest, Lithocarpus regrowth forest) and a primary old-growth forest in the subtropical Ailao Mountains of southwestern China to clarify the importance of seed and seedling banks for forest dynamics. The average species richness was the highest in soil samples from the shrubland (26.80 ± 1.98), and the lowest from the primary forest (9.93 ± 0.50). The density of germinable tree seeds increased from the secondary vegetation to the primary forest, and the density of shrub, forb, and graminoid seeds decreased significantly. The most abundant seedlings recorded in soil samples were light-demanding species in the shrubland and Populus bonatii forest. For ground flora, the number of shrub seedlings strongly decreased with the increase in stand age, and shade-tolerant tree seedlings tended to increase. The species similarity between the seed bank and the aboveground vegetation in all sites was low (Sørensen’s index = 0.11–0.33), however, the shrubland had higher similarity compared with the other three plant communities. In the primary forest, light-demanding woody species dominated in soil seed banks, while shade-tolerant species dominated in the overstory and the forest floor. In the primary forest, seedlings of dominant tree species were rare in the understory, and no seeds of the dominant species were found in the soil. Results indicated that the early stages of vegetation recovery should take into account the possibility of recovering soil seed bank processes. However, colonization and establishment of tree seedlings will be difficult once a primary forest is destroyed.     

Plant ecological traits highlight the effects of landscape on riparian plant communities along an urban–rural gradient

Urban landscapes are characterized by an urban matrix often unfavorable for biodiversity, interspersed with remnant corridors such as riparian areas. Those are increasingly threatened by urban expansion and land use change worldwide. We investigated the effect of the two components, matrix versus corridor, by comparing the riparian plant diversity and the community-level ecological traits along an urbanization gradient. Species distribution was surveyed at a local-scale along an urban riparian corridor in Strasbourg, eastern France. Ninety plots were sampled along an urbanization gradient. Several plant metrics were measured using both plant richness (R) and mean ecological trait values of species weighted by their abundance (CWM). The surroundings of each plot were first described by selecting representative variables of matrix and corridor. Secondly, the distribution of plant species according to a given i ecological trait was analyzed in relation with different levels of urbanization. Using mixed effects models, we verified whether matrix or corridor variables best explain the distribution of traits. Three levels of urbanization were detected, termed urban, suburban and peri-urban, based on landscape composition. Neither the peri-urban nor the suburban level affected plant metrics. At the urban level, and whatever indicator value was considered, the CWMi metrics clearly decreased, whereas species richness Ri increased. The upstream distance to the nearest natural area and tree cover were the most influential variables on CWMi metrics, whereas Ri metrics were mainly driven by built component and landscape heterogeneity. Matrix variables were more important in explaining Ri metrics while corridor features affected CWMi metrics. These results highlight the preponderance of the corridor effect on plant ecological types and the importance of the matrix on the selection and/or the implantation of novel species. Thus, the urbanization gradient may operate simultaneously on the abundance of local species and impose the recruitment of new co-existing species. This study suggests that ecological type responds to the urbanization gradient and may be an alternative tool to understand plant distribution rather than plant diversity.     

Trees as islands: canopy ant species richness increases with the size of liana‐free trees in a Neotropical forest

The physical characteristics of habitats shape local community structure; a classic example is the positive relationship between the size of insular habitats and species richness. Despite the high density and proximity of tree crowns in forests, trees are insular habitats for some taxa. Specifically, crown isolation (i.e. crown shyness) prevents the movement of small cursorial animals among trees. Here, we tested the hypothesis that the species richness of ants (S_a) in individual, isolated trees embedded within tropical forest canopies increases with tree size. We predicted that this pattern disappears when trees are connected by lianas (woody vines) or when strong interactions among ant species determine tree occupancy. We surveyed the resident ants of 213 tree crowns in lowland tropical forest of Panama. On average, 9.2 (range = 2–20) ant species occupied a single tree crown. Average (± SE) S_a was ca 25% higher in trees with lianas (10.2 ± 0.26) than trees lacking lianas (8.0 ± 0.51). S_a increased with tree size in liana‐free trees (S_a = 10.99A^0.256), but not in trees with lianas. Ant species composition also differed between trees with and without lianas. Specifically, ant species with solitary foragers occurred more frequently in trees with lianas. The mosaic‐like pattern of species co‐occurrence observed in other arboreal ant communities was not found in this forest. Collectively, the results of this study indicate that lianas play an important role in shaping the local community structure of arboreal ants by overcoming the insular nature of tree crowns.     

Diversity of forest plant species at the community and landscape scales in Switzerland

Abstract

Conservation strategies increasingly refer to indicators derived from large biological data. However, such data are often unique with respect to scale and species groups considered. To compare richness patterns emerging from different inventories, we analysed forest species richness at both the landscape and the community scales in Switzerland. Numbers of forest species were displayed using nationwide distributional species data and referring to three different definitions of forest species. The best regression models on a level of four predictor variables ranged between adj. R ² = 0.50 and 0.66 and revealed environmental heterogeneity/energy, substrate (rocky outcrops) and precipitation as best explanatory variables of forest species richness at the landscape scale. A systematic sample of community data (n = 729; 30 m², 200 m², 500 m²) was examined with respect to nationwide community diversity and plot species richness. More than 50% of all plots were assigned to beech forests (Eu-Fagion, Cephalanthero-Fagion, Luzulo-Fagion and Abieti-Fagion), 14% to Norway spruce forests (Vaccinio-Piceion) and 13% to silver fir forests (Piceo-Abietion). Explanatory variables were derived from averaged indicator values per plot, and from biophysical and disturbance factors. The best models for plot species richness using four predictor variables ranged between adj. R ² = 0.31 and 0.34. Light (averaged L-indicator, tree canopy) and substrate (averaged R-indicator and pH) had the highest explanatory power at all community scales. By contrast, the influence of disturbance variables was very small, as only a small portion of plots were affected by this factor. The effects of disturbances caused by extreme events or by management would reduce the tree canopies and lead to an increase in plant species richness at the community scale. Nevertheless, such community scale processes will not change the species richness at the landscape scale. Instead, the variety of different results derived from different biological data confirms the diversity of aspects to consider. Therefore, conservation strategies should refer to value systems.     

Spatial patterns of plant richness across treeline ecotones in the Pyrenees reveal different locations for richness and tree cover boundaries

Aim  To forecast the responses of alpine flora to the expected upward shift of treeline ecotones due to climatic warming, we investigated species richness patterns of vascular plants at small spatial scales across elevational transects.
Location  Richness patterns were assessed at local scales along the elevational gradient in two undisturbed treeline ecotones and one disturbed treeline ecotone in the Spanish Pyrenees.
Methods  We placed a rectangular plot (0.3–0.4 ha) in each treeline ecotone. We estimated and described the spatial patterns of plant richness using the point method and Moran's I correlograms. We delineated boundaries based on plant richness and tree cover using moving split windows and wavelet analysis. Then, to determine if floristic and tree cover boundaries were spatially related, overlap statistics were used.
Results  Plant richness increased above the forest limit and was negatively related to tree cover in the undisturbed sites. The mean size of richness patches in one of these sites was 10–15 m. Moving split windows and wavelets detected the sharpest changes in plant richness above the forest limit at both undisturbed sites. Most tree cover and plant richness boundaries were not spatially related.
Main conclusions  The upslope decrease of tree cover may explain the increase of plant richness across alpine treeline ecotones. However, the detection of abrupt richness boundaries well above the forest limit indicates the importance of local environmental heterogeneity to explain the patterns of plant richness at smaller scales. We found highly diverse microsites dominated by alpine species above the forest limit, which should be monitored to describe their response to the predicted upward shift of forests.     

Monitoring urban environments on the basis of biological traits

Urbanization induces changes in species abundance and richness that are beginning to be extensively described. However, the functional structure of urban communities still requires attention to provide a basis for a more accurate understanding of urban ecosystems’ functioning. This study has been performed in order to assess functional changes in ecological communities related to changes of urban landscape features along an urbanization gradient. Species abundance and richness of birds and butterflies in the city parks of Marseille (south-east France) have been used to assess these changes. On the basis of easily accessible traits (reproduction parameters, size, feeding habits), we have examined whether different contexts of urbanization favour some strategies more than others. Some differences occur between butterflies and birds in terms of species abundance and richness through the urbanization gradient, showing that at least some species of birds manage to colonize city centre and/or exploit urban resources better than butterflies. But our results also clearly reveal general patterns in biological traits for both birds and butterflies that further reflect the gradient of urban features from outskirts to city centre. Species associated with the city centre tolerate a wide range of conditions whereas species associated with city outskirts have more specialized abilities. Urbanization acts as an environmental filter for bird and butterfly communities selecting species able to colonize and settle in the city centre on the basis of their biological traits. In our context, environmental filters induce a biotic homogenization with urbanization through loss of species (taxonomic homogenization) and over-representation of generalist species (functional homogenization). This homogenization reflects an underlying process of disruption of biotic interactions for butterflies and birds. This study has enabled us to identify a combination of biological traits sensitive to urban features that may represent useful indicators for both theoretical and applied purposes in order to understand the impact of urbanization on animal communities.     

Home and away: biogeographical comparison of species diversity in <Emphasis Type="Italic">Thymus vulgaris</Emphasis> communities

We examined the effects of Thymus vulgaris (common thyme) on associated vegetation in both its native and introduced range. We compared local (within-community) and landscape (among-community) species richness and community composition between thyme-dominated communities in France (native range) and New Zealand (introduced range). From 7 native sites (France) and 10 introduced sites (New Zealand), all plant species present in 20 (New Zealand, 25 in France) randomly placed 100 cm × 50 cm quadrats were recorded. Local species richness was determined by calculating mean species richness/quadrat inside and outside thyme-dominated plant communities and tested for significance with the factors of range and across sites. Landscape scale differences were determined by comparing total species richness inside and outside thyme communities across all sites from both ranges. Species differences between native and introduced thyme communities were analysed using similarity percentages. We found native range microenvironments with thyme harbour more species than microenvironments without thyme and this pattern was reversed in the introduced range with thyme decreasing local species richness. A higher percentage of shared species occurred both with and without thyme in the native range compared to the introduced range. In both ranges and across all sites (except for one) species composition of thyme-associated plant communities differed from communities without thyme. Native plant communities with thyme were more similar in species composition than plant communities without thyme, but in the introduced range species composition was most similar in plant communities without thyme. These results suggest thyme’s ecosystem engineering consequences are context-dependent. Thyme may filter out competitive species that could negatively impact local species richness in its native range, but when introduced to a disturbed landscape in a novel biogeographic region, thyme reduces local species richness.     

Assessing the impact of local habitat variables and landscape context on riparian birds in agricultural,urbanized, and native landscapes

Large tracts of natural habitat are being replaced by agriculture and urban sprawl in Mediterranean regions worldwide. We have limited knowledge about the effects of human activities on native species in these landscapes and which, if any, management practices might enhance the conservation of native biodiversity within them. Through a citizen volunteer bird-monitoring project, we compared bird abundance and species richness in northern Californian riparian zones surrounded by vineyards, urban areas, and natural areas. We assessed both local and landscape-level variables that may enhance native bird diversity in each land use type. We also demonstrate a new statistical approach, generalized estimating equations, to analyze highly variable data, such as that collected by volunteers. Avian abundance was highly correlated with both landscape context and local habitat variables, while avian richness was correlated with local habitat variables, specifically shrub richness, and percent of tree cover. In particular, shrub species richness has a strong positive correlation with riparian-preferring bird species. This suggests that active local management of riparian zones in human-dominated landscapes can increase our ability to retain native bird species in these areas.     

Loss of plant biodiversity eliminates stimulatory effect of elevated CO2 on earthworm activity in grasslands

Earthworms are among the world’s most important ecosystem engineers because of their effects on soil fertility and plant productivity. Their dependence on plants for carbon, however, means that any changes in plant community structure or function caused by rising atmospheric CO₂ or loss of plant species diversity could affect earthworm activity, which may feed back on plant communities. Production of surface casts measured during three consecutive years in field experimental plots (n = 24, 1.2 m²) planted with local calcareous grassland species that varied in plant species richness (diversity levels: high, 31 species; medium, 12; low, 5) and were exposed to ambient (356 μl CO₂ l^?1) or elevated (600 μl CO₂ l^?1) CO₂ was only consistently stimulated in high diversity plots exposed to elevated CO₂ (+120 %, 31 spp: 603 ± 52 under ambient CO₂ vs. 1,325 ± 204 g cast dwt. m^?2 year^?1 under elevated CO₂ in 1996; +77 %, 940 ± 44 vs. 1,663 ± 204 g cast dwt. m^?2 year^?1 in 1998). Reductions in plant diversity had little effect on cast production in ecosystems maintained at ambient CO₂, but the stimulatory effect of elevated CO₂ on cast production disappeared when plant species diversity was decreased to 12 and 5 species. High diversity plots were also the only communities that included plant species that an earlier field study showed to be among the most responsive to elevated CO₂ and to be most preferred by earthworms to deposit casts near. Further, the +87 % CO₂-induced increase in cast production measured over the 3 years corresponded to a parallel increase in cumulative total nitrogen of 5.7 g N m^?2 and would help explain the large stimulation of aboveground plant biomass production observed in high-diversity communities under elevated CO₂. The results of this study demonstrate how the loss of plant species from communities can alter responses of major soil heterotrophs and consequently ecosystem biogeochemistry.