A rare genetically determined electrophoretic variant of human leucocyte type III hexokinase

Various lines of evidence from starch gel electrophoretic experiments demonstrate the existence of a genetically determined rare variant form of the type III isozyme of hexokinase (HK) in the leucocytes of a small percentage of the general human population. This enzymatically active variant (designated IIIS) migrates slightly, but significantly, slower than the common form (designated IIIF). In addition to finding various individuals with a two-banded pattern (heterozygotes containing both IIIS and IIIF), a finding reported previously by S. Povey, G. Corney, and H. Harris ((1975) Ann. Hum. Genet. 38, 407-415), we discovered one person homozygous for the variant phenotype. In close agreement with Povey et al., screening of 59 individuals at random indicated a gene frequency of about 0.017 for the IIIS allele, corresponding to a homozygous genotype for this allele that would be expected in about one of every 3500 individuals. Experiments involving the mixing of blood samples from the individual homozygous for IIIS with those homozygous for IIIF indicate that secondary in vitro changes, a possibility suggested by Povey et al., are not responsible for the appearance of the variant. This conclusion was supported by a demonstration of the specificity of the alteration in type III's mobility in comparison with the lack of alterations in any of the LDH isozymes, glucose-6-phosphate dehydrogenase, and various amido black-stainable proteins. These studies confirm the proposal for a genetically determined polymorphism of type III HK. No differences could be found between the total HK activity (according to spectrophotometric assays) of extracts from the subject homozygous for the variant and the activity from the homozygote for the common form, in terms of either their Km values for glucose or their heat stability properties. The similarity of Km values was supported by kinetic assays performed during staining of the individual forms on electrophoretic gels. Previous findings, reported elsewhere, of type III HK in RBC extracts were shown here to be attributable to contamination, by leucocytes, of the extracts. As a consequence of these studies, slight, but significant, amounts of type II-like HK were also discovered in leucocytes. Because our studies described above were completed in 1969, advantage was taken of the opportunity to test the HK pattern 17 years later from some of the same subjects. The patterns of the homozygotes for IIIS and for IIIF and the heterozygotes were found to be identical to the original ones, indicating no age-, environmental-, or other time-related changes that could explain the variation in type III HK.     

Calcutta-1 LDH: Kinetic and thermodynamic properties of an electrophoretic variant of human LDH

• 1.1. Kinetic constants determined for the purified heterozygous variant LD₁ were closely similar to those of normal human LD₁.
• 2.2. Calcutta-1 homozygote LDH differed from normal LDH in K_m NADH and in Arrhenius activation energy.
• 3.3. The normal B subunits confer stability on the mutant subunits in the heterotetramers of Calcutta-1 LD₁.

     

LDH calcutta-1: A mutation of the B subunit of human lactate dehydrogenase

The electrophoretic variant of human LDH, Calcutta-1, occurs at phenotypic frequencies of 0–4% throughout India. The variant was examined by various electrophoretic techniques and by heat stability studies. The LD₁ (B₄) isoenzyme was purified from normal and variant bloods by affinity chromatography and ion-exchange chromatography. A minimum of five Calcutta-1 LD₁ bands was demonstrated by isoelectric focusing. Electrophoresis of variant LD₁ in high-molar urea-acrylamide denaturing gels resulted in two Calcutta-1 B subunit bands, while normal gels yielded only a single band. Homozygote Calcutta-1 LDH from red cells demonstrated a decreased heat stability, while heterozygote variant LDH showed a normal heat stability. This effect was confirmed when purified LD₁'s were compared. Evidence is presented suggesting a B-subunit variant showing thermolability in the homozygous form.The author was supported by an Australian National University Scholarship.     

Alpha 1 antitrypsin M1: a new common genetically determined variant.

A new common variant (M1) of alpha 1 antitrypsin was detected by isoelectric focusing of serum in a pH gradient of 3.5-5.0 in polyacrylamide gels. The variant can be clearly distinguished from the common M type only when alpha 1 antitrypsin M is present in the same serum. It cannot be recognized on starch gel electrophoresis. The gene frequency in a population sample of United States whites was .09.     

A new hereditary variant of the PGM1 erythrocyte enzyme system determined by isoelectric focusing

Summary A new variant of the PGM _a ¹ erythrocyte enzyme system not identical with the known variants of the system has been detected in the hemolyzed red blood cells of a healthy blood donor by isoelectric focusing. Using this technique the variant is represented by two bands, a strong and slow one more cathodically located than the a3 band and a weak one in the position of the a2 band. Using agarose thinlayer or acetate foil electrophoresis the variant is represented only by a minimal cathodic broadening of the PGM₁ 1 band and therefore it is easily overlooked. Investigation of the propositus' family shows that the variant occurs combined with the common alleles PGM ₁ ^a1 , PGM ₁ ^a2 , and PGM ₁ ^a3 and that it has an autosomal dominant inheritance. Obviously the variant has a very low frequency.     

A rare genetically determined variant of psuedocholinesterase in two German families with high plasma enzyme activity.

Activity of pseudocholinesterase (acylcholine-acyl-hydrolase) elevated up to four times has been detected in sera of members of two German families. The catalytic concentrations of the pseudocholinesterase of the afflicted members of both families (male and female) varied between 4800 U/l and 10 200 U/o (acetylthiocholine iodide substrate). The pseudocholinesterase of the propositi exhibits isoenzyme separation patterns in polyacrylamide electrophoresis as well as in electrofocussing which are different from those of pseudocholinesterase from normal persons. No differences could be seen as regards the Km of substrates or the inhibition by dibucaine, fluoride or succinyldiocholine.     

Further data on the incidence and segregation of genetically determined electrophoretic variants of human red cell NADH diaphorase.

Human red cell NADH diaphorase isozyme patterns have been examined in 3,060 unrelated Australians of European origin, by starch gel electrophoresis. 26 people with variant isozyme patterns were encountered: 12 were phenotype Dia 2-1 and 13 were Dia 4-1. A new variant isozyme pattern (Dia 7-1) was identified. No variants were identified in 100 Melanesians and 70 Australian Aborigines.     

A new allele at the Mup-1 locus controlling an electrophoretic variant of major urinary proteins in mice

The present study showed that the presence or absence of a new component of major urinary proteins (Mups), which is found in MOA mice, an inbred strain of Mus musculus molossinus (Japanese wild mice), is controlled by a single codominant gene locus. The linkage analysis shows that the locus is on chromosome 4, where the Mup-1 locus is assigned; its alleles, Mup-1a, and Mup-1b determine two phenotypic forms of MUPs in laboratory mice (M. m. domesticus). Recombination values between the locus and other loci on chromosome 4, such as brown (b), Pgm-2, and Gpd-1 are compatible with the gene order, Mup-1-b-Pgm-2-Gpd-1, on chromosome 4. Thus, it is concluded that the locus is identical to Mup-1 and it is proposed that Mup-1c be designated as the allele that determines a third phenotypic form of MUPs in MOA mice.     

A rare electrophoretic enzyme variant of serum alkaline phosphatase in a group of Icelanders.

An electrophoretic isoenzyme variant of serum alkaline phosphatase was found in 10 out of 343 subjects belonging to an Icelandic population in Husavik and the Husavik region. 9 of the variant-positive subjects were women. The enzyme variant differs from normal isoenzymes in electrophoretic mobility, substrate specificity, and response to inhibitors. It could be demonstrated that nine of the subjects with the enzyme variant were related with each other.     

Scalp hair-whorl orientation of Japanese individuals is random; hence,the trait's distribution is not genetically determined

Because the features of clockwise versus anti-clockwise orientation of hair-whorl coiling developed on a person's scalp is (partially, albeit significantly) correlated with that individual's right- versus left-hand-use preference (i.e., handedness) in the US and British subjects, these traits have been recently suggested to be determined biologically and through a common genetic mechanism. Here I report results of a serendipitously made observation with the Japanese population that helps to scrutinize validity of partial correlation between these attributes and to ascertain whether the underlying gene's frequency variations exist in different gene pools. Surprisingly, the whorl orientation in the Japanese individuals was found to be random, although their handedness variation is similar to that of the US population. Therefore, the whorl orientation trait is not genetically determined in the Japanese population. This result supports the idea that separate decisions must be made during embryogenesis for developing handedness and hair-whorl features at least in Japanese individuals. A recent study found the lack of association between whorl orientation and handedness in the German population, yet previous studies suggested that their scalp hair orientation is genetically determined. Therefore, pronounced genetic variation for the hair-whorl trait exists between individuals of different geographical regions. As hand preference exhibits “complex correlation” with brain hemispheric functional specialization, implications of these findings are discussed here with the goal to define biology of brain hemispheric laterality determination.     

Primary, nonsyndromic vesicoureteric reflux and its nephropathy is genetically heterogeneous, with a locus on chromosome 1

Primary vesicoureteric reflux (VUR) affects 1%-2% of whites, and reflux nephropathy (RN) causes up to 15% of end-stage renal failure in children and adults. There is a 30-50-fold increased incidence of VUR in first-degree relatives of probands, compared with the general population. We report the results of the first genomewide search of VUR and RN; we studied seven European families whose members exhibit apparently dominant inheritance. We initially typed 387 polymorphic markers spaced, on average, at 10 cM throughout the genome; we used the GENEHUNTER program to provide parametric and nonparametric linkage analyses of affected individuals. The most positive locus spanned 20 cM on 1p13 between GATA176C01 and D1S1653 and had a nonparametric LOD score (NPL) of 5.76 (P=.0002) and a parametric LOD score of 3.16. Saturation with markers at 1-cM intervals increased the NPL to 5.94 (P=.00009). Hence, VUR maps to a locus on chromosome 1. There was evidence of genetic heterogeneity at the chromosome 1 locus, and 12 additional loci were identified genomewide, with P<.05. No significant linkage was found to 6p, where a renal and ureteric malformation locus has been reported, or to PAX2, mutations of which cause VUR in renal-coloboma syndrome. Our results support the hypothesis that VUR is a genetic disorder.     

In Candida albicans, resistance to flucytosine and terbinafine is linked to MAT locus homozygosity and multilocus sequence typing clade 1

A panel of 637 isolates of Candida albicans that had been typed by multilocus sequence typing (MLST) and tested for susceptibility to amphotericin B, caspofungin, fluconazole, flucytosine, itraconazole, ketoconazole, miconazole, terbinafine and voriconazole was the material for a statistical analysis of possible associations between antifungal susceptibility and other properties. For terbinafine and flucytosine, the greatest proportion of low-susceptibility isolates, judged by two resistance breakpoints, was found in MLST clade 1 and among isolates homozygous at the MAT locus, although only three isolates showed cross-resistance to the two agents. Most instances of low susceptibility to azoles, flucytosine and terbinafine were among oropharyngeal isolates from HIV-positive individuals. Statistically significant correlations were found between terbinafine and azole minimal inhibitory concentrations (MICs), while correlations between flucytosine MICs and azole MICs were less strong. It is concluded that a common regulatory mechanism may operate to generate resistance to the two classes of agent that inhibit ergosterol biosynthesis, terbinafine and the azoles, but that flucytosine resistance, although still commonly associated with MAT homozygosity, is differently regulated.     

Biochemical genetics of rat esterases: Another genetically determined variant,Es-7, is linked to five other esterase loci

A new esterase variant has been isolated by electrophoresis of homogenized testis, heart, and lung tissues. This esterase variant is genetically determined. The carrier strain was crossed with another in which the enzyme was not originally present; the presence of the enzyme was investigated in successive generations and in backcrosses to the carrier strain. Linkage was found with other esterases in linkage group V, while there was independent segregation from the immunogenetic markers Ly-1, Ly-2, LH-1, and R1-1a.     

The brown coat colour of Coppernecked goats is associated with a non‐synonymous variant at the TYRP1 locus on chromosome 8

The recent development of a goat SNP genotyping microarray enables genome‐wide association studies in this important livestock species. We investigated the genetic basis of the black and brown coat colour in Valais Blacknecked and Coppernecked goats. A genome‐wide association analysis using goat SNP50 BeadChip genotypes of 22 cases and 23 controls allowed us to map the locus for the brown coat colour to goat chromosome 8. The TYRP1 gene is located within the associated chromosomal region, and TYRP1 variants cause similar coat colour phenotypes in different species. We thus considered TYRP1 as a strong positional and functional candidate. We resequenced the caprine TYRP1 gene by Sanger and Illumina sequencing and identified two non‐synonymous variants, p.Ile478Thr and p.Gly496Asp, that might have a functional impact on the TYRP1 protein. However, based on the obtained pedigree and genotype data, the brown coat colour in these goats is not due to a single recessive loss‐of‐function allele. Surprisingly, the genotype distribution and the pedigree data suggest that the ⁴⁹⁶Asp allele might possibly act in a dominant manner. The ⁴⁹⁶Asp allele was present in 77 of 81 investigated Coppernecked goats and did not occur in black goats. This strongly suggests heterogeneity underlying the brown coat colour in Coppernecked goats. Functional experiments or targeted matings will be required to verify the unexpected preliminary findings.     

Evolution and selection of Rhg1, a copy‐number variant nematode‐resistance locus

The soybean cyst nematode (SCN) resistance locus Rhg1 is a tandem repeat of a 31.2 kb unit of the soybean genome. Each 31.2‐kb unit contains four genes. One allele of Rhg1, Rhg1‐b, is responsible for protecting most US soybean production from SCN. Whole‐genome sequencing was performed, and PCR assays were developed to investigate allelic variation in sequence and copy number of the Rhg1 locus across a population of soybean germplasm accessions. Four distinct sequences of the 31.2‐kb repeat unit were identified, and some Rhg1 alleles carry up to three different types of repeat unit. The total number of copies of the repeat varies from 1 to 10 per haploid genome. Both copy number and sequence of the repeat correlate with the resistance phenotype, and the Rhg1 locus shows strong signatures of selection. Significant linkage disequilibrium in the genome outside the boundaries of the repeat allowed the Rhg1 genotype to be inferred using high‐density single nucleotide polymorphism genotyping of 15 996 accessions. Over 860 germplasm accessions were found likely to possess Rhg1 alleles. The regions surrounding the repeat show indications of non‐neutral evolution and high genetic variability in populations from different geographic locations, but without evidence of fixation of the resistant genotype. A compelling explanation of these results is that balancing selection is in operation at Rhg1.     

A new variant of the Es-1 locus in the rat

A new prealbumin plasma esterase was demonstrated by the use of miniaturized polyacrylamide slab gel electrophoresis. Genetic analysis indicated that the new variant is controlled by the Es-1 locus and this gene was designated Es-1c. Among 11 rat strains only one strain, WJ, possessed the gene. Two random-bred stocks, Jcl:Wistar and Jcl:SD, also maintained it in their populations. Miniaturized polyacrylamide slab gel electrophoresis showed that the ES-1 band consisted of two close bands with the cathodal one staining darker.     

An allele of theProt locus in maize is a variant for the site of protein processing

An allele of theProt locus, which encodes a major globulin of the maize scutellum, is a variant for a site of protein processing. Segregation analysis and recombination mapping indicate that the variant is an allele of theProt locus. DesignatedProt-V, this allele specifies three polypeptides, V1, V2, and V3. The V1 polypeptide is incompletely processed during the proteolytic processing step catalyzed by the product of theMep locus. Cyanogen bromide cleavage studies support the precursor-product relationship between V1 and V2. The V1 product is shortened with respect to other PROT′ proteins and it is postulated that the normal site of MEP processing has been removed by this foreshortening. This work was done with the support of United States Department of Agriculture Grant GM84-CRCR-1-1479.     

The degree of CTL-induced DNA solubilization is not determined by the human vs mouse origin of the target cell

CTL-mediated lysis is unique among lytic mechanisms in inducing rapid, prelytic nuclear disintegration. Target cell DNA can be solubilized within minutes as a result of degradation, which can proceed to the nucleosomal level, presumably mediated by endonucleases that are either endogenous or injected by the CTL. Nuclear disintegration has been reported for mouse lymphoid target cells by several groups. However, previous studies in which human target cells were studied saw little or no DNA solubilization. We here report rapid, extensive CTL-induced solubilization of DNA in human lymphoid target cells; on the other hand, we found that three mouse cell lines exhibit little or no nuclear disintegration. We conclude that the degree of nuclear disintegration depends on the nature of the target cell, but is not determined by the species of origin of the target cell.