The enigmatic molar from Gondolin, South Africa: Implications for Paranthropus paleobiology

The specific attribution of the large hominin M₂ (GDA-2) from Gondolin has significant implications for the paleobiology of Paranthropus. If it is a specimen of Paranthropus robustus it impacts that species' size range, and if it belongs to Paranthropus boisei it has important biogeographic implications. We evaluate crown size, cusp proportions and the likelihood of encountering a large-bodied mammal species in both East and South Africa in the Early Pleistocene. The tooth falls well outside the P. robustus sample range, and comfortably within that for penecontemporaneous P. boisei. Analyses of sample range, distribution and variability suggest that it is possible, albeit unlikely to find a M₂ of this size in the current P. robustus sample. However, taphonomic agents - carnivore (particularly leopard) feeding behaviors - have likely skewed the size distribution of the Swartkrans and Drimolen P. robustus assemblage. In particular, assemblages of large-bodied mammals accumulated by leopards typically display high proportions of juveniles and smaller adults. The skew in the P. robustus sample is consistent with this type of assemblage. Morphological evidence in the form of cusp proportions is congruent with GDA-2 representing P. robustus rather than P. boisei. The comparatively small number of large-bodied mammal species common to both South and East Africa in the Early Pleistocene suggests a low probability of encountering an herbivorous australopith in both. Our results are most consistent with the interpretation of the Gondolin molar as a very large specimen of P. robustus. This, in turn, suggests that large, presumptive male, specimens are rare, and that the levels of size variation (sexual dimorphism) previously ascribed to this species are likely to be gross underestimates.     

Evolutionary Relationships Among Robust and Gracile Australopiths: An “Evo-devo” Perspective

Hominin fossils of gracile and robust australopith groups were found both in East and in South Africa. It is unclear, however, whether all robusts belong to a monophyletic Paranthropus clade, as the craniofacial resemblance among robust australopiths might only be a superficial correlate of similar masticatory adaptations and not evidence of shared ancestry. It has been suggested that the East African Australopithecus/Paranthropus boisei and the South African A./P. robustus might be convergent allometric variants of their gracile geographical neighbors A. afarensis and A. africanus. Here we approach the phylogenetic questions about robust and gracile australopiths from an ??evo-devo?? perspective, examining how simple alterations of development could contribute to the shape differences among hominin species. Using geometric morphometrics we compare gracile and robust australopith crania in the context of the allometric scaling patterns of Pan troglodytes, P. paniscus, and Gorilla gorilla. We examine support for two alternative evolutionary scenarios based on predictions derived from quantitative genetics models: either (1) A./P. robustus evolved in South Africa from the gracile A. africanus, or (2) A./P. robustus is a local variant of the eastern African A./P. boisei. We use developmental simulations to demonstrate that some robust characteristics (wide faces, anteriorly placed zygomatics, and facial dishing) can be predicted by allometric scaling along the ontogenetic trajectory of the gracile A. africanus. We find, however, that the facial differences between A. africanus specimens (Taung, Sts 5, Sts 71, and Stw 505) and A./P. robustus specimen SK 48 cannot be explained by allometric scaling alone. Facial shape differences between A./P. robustus SK 48 and A./P. boisei (KNM-ER 732, KNM-ER 406, OH 5) and the A./P. aethiopicus specimen KNM-WT 17000, on the other hand, can largely be explained by allometric scaling. This is consistent with a close evolutionary relationship of these robust taxa.     

Stretching the time span of hominin evolution at Kromdraai (Gauteng,South Africa): Recent discoveries

The Plio-Pleistocene locality of Kromdraai B has yielded the type specimen of Paranthropus robustus, as well as 27 additional fossil hominin specimens. In a number of both cranial and dental features, the states shown by the Kromdraai Paranthropus are more conservative when compared to the more derived conditions displayed by both South African conspecifics and the post-2.3 Ma eastern African Paranthropus boisei. Since 2014, we excavated the earliest known infilling of the Kromdraai cave system in a previously unexplored area. This new locality provided as yet 2200 identifiable macrovertebrate fossils, including 22 hominins, all tied in the earliest part of the stratigraphic sequence, representing three distinct depositional periods. Since we report here, for the first time, the occurrence of fossil hominins in Members 1 and 2, our discoveries stretch the time span of hominin evolution at Kromdraai and contribute to a better understanding of the origin of Paranthropus in southern Africa.     

First Early Hominin from Central Africa (Ishango,Democratic Republic of Congo)

Despite uncontested evidence for fossils belonging to the early hominin genus Australopithecus in East Africa from at least 4.2 million years ago (Ma), and from Chad by 3.5 Ma, thus far there has been no convincing evidence of Australopithecus, Paranthropus or early Homo from the western (Albertine) branch of the Rift Valley. Here we report the discovery of an isolated upper molar (#Ish25) from the Western Rift Valley site of Ishango in Central Africa in a derived context, overlying beds dated to between ca. 2.6 to 2.0 Ma. We used µCT imaging to compare its external and internal macro-morphology to upper molars of australopiths, and fossil and recent Homo. We show that the size and shape of the enamel-dentine junction (EDJ) surface discriminate between Plio-Pleistocene and post-Lower Pleistocene hominins, and that the Ishango molar clusters with australopiths and early Homo from East and southern Africa. A reassessment of the archaeological context of the specimen is consistent with the morphological evidence and suggest that early hominins were occupying this region by at least 2 Ma.     

The dental developmental status of six East African juvenile fossil hominids

Radiographs of five juvenile fossil hominids from Koobi Fora, Kenya are described and presented together with measurements and observations made on the original speciments. Data are also presented for a single specimen from Olduvai Gorge, Tanzania. Four of these specimens are attributed to Paranthropus boisei (KNM ER 812, 1477 1820 and OH 30), and are all of remarkably similar dental developmental status. Conventional age estimates for these specimens of Paranthropus based on the first permanent molar, indicate an age at death of around 2·2 to 3 years. Perikymata counts on permanent lower central incisors of these specimens also indicate an age at death between 2·5 and 3 years. Two specimens attributed to early Homo (KNM ER 820 and 1507), are dentally more mature than specimens of Paranthropus boisei described here being closer to 5 years of age. Differences between the spacing and distribution of perikymata on the surfaces of incisor teeth are now apparent between Homo, Australopithecus. Paranthropus boisei and Paranthropus robustus: these are described in this paper. Details of the dental developmental patterns of these hominids are also discussed in the light of recent publications that have presented data about hominid eruption sequences and fossil hominid growth periods.     

Inner structural organization of the distal humerus in Paranthropus and Homo

The taxonomic attribution of isolated hominin distal humeri has been a matter of uncertainty and disagreement notwithstanding their relative abundance in the fossil record. Four taxonomically-based morphotypes, respectively representing P. boisei, P. robustus, non-erectus early Homo and H. erectus, have been identified based on the cross-sectional outer shape variation of an assemblage of Plio-Pleistocene eastern and southern African specimens (Lague, 2015). However, the existence of possible differences between Paranthropus and Homo in the inner structural organisation at this skeletal site remains unexplored. We used noninvasive imaging techniques to tentatively characterize the endostructural organization of five early Pleistocene distal humeri from South Africa (TM 1517g, SK 24600, SKX 10924, SKX 34805) and Ethiopia (Gombore IB), which have been variably attributed to Paranthropus or Homo. While the investigated specimens reveal diverse degrees of inner preservation related to their taphonomic and diagenetic history, in all but SK 24600 from Swartkrans we could comparatively assess some geometric properties at the most distal cross-sectional level (%CA, I_x/I_y, I_max/I_min) and quantify cortical bone thickness topographic variation across the preserved shaft portions by means of a 2-3D Relative Cortical Thickness index. Whenever possible, we also provided details about the site-specific organization of the cancellous network and measured the same parameters in a comparative sample of twelve adult extant humans. For most features, our results indicate two main patterns: the first includes the specimens TM 1517g, SKX 10924 and SKX 34805, while the second endostructural morphotype sets apart the robust Homo aff. erectus Gombore IB specimen from Melka Kunture, which more closely resembles the condition displayed by our comparative human sample. Notably, marked differences in the amount and pattern of proximodistal cortical bone distribution have been detected between Gombore IB and SKX 34805 from Swartkrans. Given its discordant outer and inner signatures, we conclude that the taxonomic status of SKX 34805 deserves further investigations.     

The SKX 1084 hominin patella from Swartkrans Member 2, South Africa: An integrated analysis of its outer morphology and inner structure

SKX 1084 is an isolated partial patella from Swartkrans Member 2, South Africa, attributed to a small-bodied Paranthropus robustus. This study provides complementary information on its outer conformation and, for the first time for a fossil hominin patella, documents its inner structure in the perspective of adding biomechanically-related evidence to clarify its identity. We used X-ray micro-tomography to investigate SKX 1084 and to extract homologous information from a sample of 12 recent human, one Neanderthal, and two adult Pan, patellae. We used geometric morphometrics to compare the outer equatorial contours. In SKX 1084, we identified two cancellous bony spots suitable for textural assessment (trabecular bone volume fraction, trabecular thickness, degree of anisotropy), and two related virtual slices for measuring the maximum cortico-trabecular thickness (CTT) of the articular surface. SKX 1084 shows a more complex articular shape than that for Pan, but still simpler than typical in Homo sapiens. At all sites, its CTT is thinner compared to Pan and approaches the condition in humans. This is also true for the expanded volume of the cancellous network. However, at both investigated spots, SKX 1084 is systematically intermediate between Homo and Pan for trabecular bone volume fraction and trabecular thickness, a pattern already shown in previous analyses on other Paranthropus postcranial remains. In the absence of any structural signal from patellae unambiguously sampling Paranthropus, as well as of comparable evidence extracted from specimens representing early Homo, our results do not allow rejection of the original taxonomic attribution of SKX 1084.     

Experimental perspective on fallback foods and dietary adaptations in early hominins

The robust jaws and large, thick-enameled molars of the Plio–Pleistocene hominins Australopithecus and Paranthropus have long been interpreted as adaptations for hard-object feeding. Recent studies of dental microwear indicate that only Paranthropus robustus regularly ate hard items, suggesting that the dentognathic anatomy of other australopiths reflects rare, seasonal exploitation of hard fallback foods. Here, we show that hard-object feeding cannot explain the extreme morphology of Paranthropus boisei. Rather, analysis of long-term dietary plasticity in an animal model suggests year-round reliance on tough foods requiring prolonged postcanine processing in P. boisei. Increased consumption of such items may have marked the earlier transition from Ardipithecus to Australopithecus, with routine hard-object feeding in P. robustus representing a novel behaviour.     

Civettictis braini nov. sp. (Mammalia: Carnivora), a new viverrid from the hominin-bearing site of Kromdraai (Gauteng,South Africa)

A new Plio-Pleistocene viverrid species is described based on two newly discovered maxillae (KW 10141 and KW 10383) from the recent excavations at the hominin-bearing site of Kromdraai (Gauteng, South Africa). This major site allows us to address the conundrum of Paranthropus and Homo origins in South Africa and presents a highly diverse carnivore spectrum (at least 22 species) including herpestids and viverrids. Civettictis braini nov. sp. is a viverrid species comparable in size to the extant African civet Civettictis civetta (Schreber, 1776). However C. braini nov. sp. differs significantly from the extant species in its dental proportions. Its canine and three premolars (P1–P3) are relatively robust, while its carnassials (P4) and two molars (M1, M2) are extremely reduced. This new species supplements our knowledge on carnivore taxonomic diversity and paleoecology in Southern Africa about 2 millions of years ago.     

Newly discovered fossil- and artifact-bearing deposits, uranium-series ages, and Plio-Pleistocene hominids at Swartkrans Cave, South Africa

We report on new research at Swartkrans Cave, South Africa, that provides evidence of two previously unrealized artifact- and fossil-bearing deposits. These deposits underlie a speleothem dated by the uranium-thorium disequilibrium technique to 110,000 ± 1,980 years old, the first tightly constrained, geochronological date available for the site. Recovered fauna from the two underlying deposits—including, prominently, the dental remains of Paranthropus (Australopithecus) robustus from the uppermost layer (Talus Cone Deposit)—indicate a significantly older, late Pliocene or early Pleistocene age for these units. The lowest unit (LB East Extension) is inferred to be an eastward extension of the well-known Lower Bank of Member 1, the earliest surviving infill represented at the site. The date acquired from the speleothem also sets the maximum age of a rich Middle Stone Age lithic assemblage.     

Baboon Feeding Ecology Informs the Dietary Niche of Paranthropus boisei

Hominins are generally considered eclectic omnivores like baboons, but recent isotope studies call into question the generalist status of some hominins. Paranthropus boisei and Australopithecus bahrelghazali derived 75%–80% of their tissues’ δ¹³C from C₄ sources, i.e. mainly low-quality foods like grasses and sedges. Here I consider the energetics of P. boisei and the nutritional value of C₄ foods, taking into account scaling issues between the volume of food consumed and body mass, and P. boisei’s food preference as inferred from dento-cranial morphology. Underlying the models are empirical data for Papio cynocephalus dietary ecology. Paranthropus boisei only needed to spend some 37%–42% of its daily feeding time (conservative estimate) on C₄ sources to meet 80% of its daily requirements of calories, and all its requirements for protein. The energetic requirements of 2–4 times the basal metabolic rate (BMR) common to mammals could therefore have been met within a 6-hour feeding/foraging day. The findings highlight the high nutritional yield of many C₄ foods eaten by baboons (and presumably hominins), explain the evolutionary success of P. boisei, and indicate that P. boisei was probably a generalist like other hominins. The diet proposed is consistent with the species’ derived morphology and unique microwear textures. Finally, the results highlight the importance of baboon/hominin hand in food acquisition and preparation.     

Comparison of Visceral Leishmaniasis Diagnostic Antigens in African and Asian Leishmania donovani Reveals Extensive Diversity and Region-specific Polymorphisms

Background

Visceral leishmaniasis (VL), caused by infection with Leishmania donovani complex, remains a major public health problem in endemic regions of South Asia, East Africa, and Brazil. If untreated, symptomatic VL is usually fatal. Rapid field diagnosis relies principally on demonstration of anti-Leishmania antibodies in clinically suspect cases. The rK39 immunochromatographic rapid diagnostic test (RDT) is based on rK39, encoded by a fragment of a kinesin-related gene derived from a Brazilian L. chagasi, now recognised as L. infantum, originating from Europe. Despite its reliability in South Asia, the rK39 test is reported to have lower sensitivity in East Africa. A reason for this differential response may reside in the molecular diversity of the rK39 homologous sequences among East African L. donovani strains.

Methodology/Principal Findings

Coding sequences of rK39 homologues from East African L. donovani strains were amplified from genomic DNA, analysed for diversity from the rK39 sequence, and compared to South Asian sequences. East African sequences were revealed to display significant diversity from rK39. Most coding changes in the 5′ half of repeats were non-conservative, with multiple substitutions involving charge changes, whereas amino acid substitutions in the 3′ half of repeats were conservative. Specific polymorphisms were found between South Asian and East African strains. Diversity of HASPB1 and HASPB2 gene repeat sequences, used to flank sequences of a kinesin homologue in the synthetic antigen rK28 designed to reduce variable RDT performance, was also investigated. Non-canonical combination repeat arrangements were revealed for HASPB1 and HASPB2 gene products in strains producing unpredicted size amplicons.

Conclusions/Significance

We demonstrate that there is extensive kinesin genetic diversity among strains in East Africa and between East Africa and South Asia, with ample scope for influencing performance of rK39 diagnostic assays. We also show the importance of targeted comparative genomics in guiding optimisation of recombinant/synthetic diagnostic antigens.     

A Homo habilis maxilla and other newly-discovered hominid fossils from Olduvai Gorge, Tanzania

In 1995, a 1.8 million year old hominid maxilla with complete dentition (OH 65) was excavated from Bed I in the western part of Olduvai Gorge. The molar crowns are small relative to the long flaring roots, and the root of the canine is very long and straight. The broad maxilla with wide U-shaped palate and the form of the tooth roots closely match those of KNM-ER 1470 which, in its parietal size and morphology, matches the type specimen of Homo habilis, OH 7. Thus, OH 65 and KNM-ER 1470 group with OH 7 as representatives of H. habilis while some other Olduvai specimens, such as OH 13 and OH 24, have more in common in terms of morphology and brain size with Australopithecus africanus. Between 1995 and 2007, the OLAPP team has recovered teeth of eight other hominid individuals from various parts of Olduvai Gorge. These have been identified as belonging to H. habilis, Paranthropus boisei, and Australopithecus cf. africanus.     

Cross-sectional morphology of the SK 82 and 97 proximal femora

Computed tomography scans of the proximal femoral shaft of the South African “robust” australopithecine, A. robustus, reveal a total morphological pattern that is similar to the specimen attributed to A. boisei in East Africa but unlike that of Homo erectus or modern human femora. Like femora attributed to H. erectus, SK 82 and 97 have very thick cortices, although they do not have the extreme increase in mediolateral buttressing that is so characteristic of H. erectus. And unlike H. erectus or modern humans, their femoral heads are very small relative to shaft strength. These features are consistent with both increased overall mechanical loading of the postcranial skeleton and a possibly slightly altered pattern of bipedal gait relative to that of H. erectus and modern humans. Am J Phys Anthropol 109:509–521, 1999. © 1999 Wiley-Liss, Inc.     

A New Horned Crocodile from the Plio-Pleistocene Hominid Sites at Olduvai Gorge,Tanzania

Background

The fossil record reveals surprising crocodile diversity in the Neogene of Africa, but relationships with their living relatives and the biogeographic origins of the modern African crocodylian fauna are poorly understood. A Plio-Pleistocene crocodile from Olduvai Gorge, Tanzania, represents a new extinct species and shows that high crocodylian diversity in Africa persisted after the Miocene. It had prominent triangular “horns” over the ears and a relatively deep snout, these resemble those of the recently extinct Malagasy crocodile Voay robustus, but the new species lacks features found among osteolaemines and shares derived similarities with living species of Crocodylus.

Methodology/Principal Findings

The holotype consists of a partial skull and skeleton and was collected on the surface between two tuffs dated to approximately 1.84 million years (Ma), in the same interval near the type localities for the hominids Homo habilis and Australopithecus boisei. It was compared with previously-collected material from Olduvai Gorge referable to the same species. Phylogenetic analysis places the new form within or adjacent to crown Crocodylus.

Conclusions/Significance

The new crocodile species was the largest predator encountered by our ancestors at Olduvai Gorge, as indicated by hominid specimens preserving crocodile bite marks from these sites. The new species also reinforces the emerging view of high crocodylian diversity throughout the Neogene, and it represents one of the few extinct species referable to crown genus Crocodylus.     

Cranium of a juvenile Australopithecus boisei from the lower Omo Basin,Ethiopia

A partial cranium of a juvenile Australopithecus boisei, recovered from the Shungura Formation in the lower Omo basin, southern Ethiopia, and dated at 2.1 m.y. B.P. , is described anatomically and compared to young and adult australopithecines, modern Homo sapiens, chimpanzees, and gorillas. A resemblance to the gracile Australopithecus is observed but is attributed mainly to the generalized appearance of the Omo specimen resulting from its young individual age. An attempt is made to reconstruct part of the ontogenetic process of A. boisei. This process is compared to the developmental changes exhibited by the African great apes and modern man and is found to combine characteristics of both.     

Cercopithecoid primate postcranial fossils from Cooper's D,South Africa

Among several highly fossiliferous localities in the Bloubank Valley (Gauteng, South Africa), the Cooper's Cave System has been known since 1938 and has produced a rich fossil assemblage, including some remains of the early hominin Paranthropus robustus. In 2001, excavations began at a new locality, Cooper's D, which dates to ～1.4-1.5 Ma. Although hominins are relatively rare in the assemblage, remains of cercopithecoid primates are much more common. Craniodental fossils currently indicate the possible presence of at least three large-bodied cercopithecoid primate genera at Cooper's D: Gorgopithecus, Papio, and Theropithecus. In this study, we identify and describe > 100 cercopithecoid primate postcranial fossils representing all regions of the appendicular skeleton. The specimens come from several age classes and size morphs; more than one third of the fossils described are from sub-adult and juvenile individuals. The adult postcranial fossils vary substantially in size, with body masses estimated between 30 and 60 kg (from 16 of the better preserved specimens). The functional morphology of the postcranial remains indicate that these elements come from animals that likely utilized terrestrial substrates, but they remain difficult to definitively attribute to Gorgopithecus, Theropithecus, or Papio given the absence of associated skeletons. The smaller specimens likely belong to Papio while the larger ones can be attributed to the other two genera. Because Cooper's D has also yielded fossils of the early hominin Paranthropus robustus, this raises the question of how these four large-bodied, mostly terrestrial primates sympatrically utilized the landscape.     

FUNCTIONAL MORPHOLOGY,STABLE ISOTOPES,AND HUMAN EVOLUTION: A MODEL OF CONSILIENCE

Foraging is constrained by the energy within resources and the mechanics of acquisition and assimilation. Thick molar enamel, a character trait differentiating hominins from African apes, is predicted to mitigate the mechanical costs of chewing obdurate foods. The classic expression of hyperthick enamel together with relatively massive molars, termed megadontia, is most evident in Paranthropus, a lineage of hominins that lived about 2.7–1.2 million years ago. Among contemporary primates, thicker molar enamel corresponds with the consumption of stiffer, deformation‐resistant foods, possibly because thicker enamel can better resist cracking under high compressive loads. Accordingly, plant underground storage organs (USOs) are thought to be a central food resource for hominins such as Paranthropus due to their abundance, isotopic composition, and mechanical properties. Here, we present a process‐based model to investigate foraging constraints as a function of energetic demands and enamel wear among human ancestors. Our framework allows us to determine the fitness benefits of megadontia, and to explore under what conditions stiff foods such as USOs are predicted to be chosen as fallback, rather than preferred, resources. Our model predictions bring consilience to the noted disparity between functional interpretations of megadontia and microwear evidence, particularly with respect to Paranthropus boisei.     

A model for group B Streptococcus pilus type 1: the structure of a 35-kDa C-terminal fragment of the major pilin GBS80

The Gram-positive pathogen Streptococcus agalactiae, known as group B Streptococcus (GBS), is the leading cause of bacterial septicemia, pneumonia, and meningitis among neonates. GBS assembles two types of pili—pilus islands (PIs) 1 and 2—on its surface to adhere to host cells and to initiate colonization for pathogenesis. The GBS PI-1 pilus is made of one major pilin, GBS80, which forms the pilus shaft, and two secondary pilins, GBS104 and GBS52, which are incorporated into the pilus at various places. We report here the crystal structure of the 35-kDa C-terminal fragment from GBS80, which is composed of two IgG-like domains (N2-N3). The structure was solved by single-wavelength anomalous dispersion using sodium-iodide-soaked crystals and diffraction data collected at the home source. The N2 domain exhibits a cnaA/DEv-IgG fold with two calcium-binding sites, while the N3 domain displays a cnaB/IgG-rev fold. We have built a model for full-length GBS80 (N1, N2, and N3) with the help of available homologous major pilin structures, and we propose a model for the GBS PI-1 pilus shaft. The N2 and N3 domains are arranged in tandem along the pilus shaft, whereas the respective N1 domain is tilted by approximately 20° away from the pilus axis. We have also identified a pilin-like motif in the minor pilin GBS52, which might aid its incorporation at the pilus base.     

Early Hominid diversity, age and biogeography of the Malawi-Rift

Remains of earlyHomo andParanthropus have been recovered from two contemporaneous sites (Uraha and Malema) in the “Hominid Corridor” in Northern Malawi (Chiwondo Beds). Faunal dating suggests an age of 2.5–2.3 Ma for both hominids. The two specimens, a mandible attributed toHomo rudolfensis (UR 501 from Uraha), and a maxillary fragment ofParanthropus boisci. (RC 911 from Malema) known only from eastern Africa, represent the southernmost known distribution of these taxa. The biogeographic significance of these hominids from the Malawi-Rift lay in their association with the eastern African endemic animal group. Biogeographic variation in south-eastern Africa may be linked to habitat change occurring due to climate change, with maximum change occurring around 2.5 Ma.