对渤海藻类的新认识

本文阐述了对渤海藻类的新认识。主要指明其为由顶和前间系组成的( 3Ia 或 3I)联合古口的性质,腰凸的数量(2—4个)和分布(2个位腹面,0—2个位背面)及腰褶的次生性质。据此,讨论了该类在多甲藻亚目中的系统位置。除修订本亚科所属的老属、种外,本文还描述了该亚科的2个新种和3个新形态型。并在回顾世界上非海相沟鞭藻的历史、阐述渤海藻亚科在地层中的产出及共生分子的基础上,结合其他地质、古生物证据,探讨了本亚科的古生态及它为多甲藻亚目中一支向淡水环境迁侈的先祖的可能性。     

A revision of the Dip lop salts group of dinoflagellates (Dinophyceae) based on material from the British Isles

SEM has made possible a detailed re-examination of the thecal plates of marine dinoflagellates belonging to the Diplopsalis group which have been collected in an extensive survey of the seas around the British Isles. Six genera are recognized: Diplopsalis, Diplopsalopsis, Dissodium, Oblea, Zygabikodinium and die new genus and species Boreadinium pisiformis Dodge 8c Hermes. The confused taxonomic history of the group is discussed, the valid species are listed and a key for the identification of the genera is given.     

Eolimna martinii n. gen., n. sp. (Bacillariophyceae) aus dem Unter-Oligozän von Sieblos/Rhön im Vergleich mit ähnlichen rezenten Taxa

The laminated sediments of the Lower Oligocene ‘Sieblos-Schichten’ (dysodile and kieselgur-sediments) contain many individuals of a naviculoid diatom species. Formerly this group of diatoms would have been classified without doubt as Navicula (section ‘Minusculae’). After splitting this extremely heterogeneous genus in Navicula sensu stricto and some other homogeneous genera, the pattern of structures of this fossil species does not correspond to any established genus. For that reason this form will be described as the generotype of a new genus Eolimna. Furthermore it became evident that some Recent species (assigned to Navicula) show the same pattern of structures as the new genus Eolimna (generotype: E. martinii) which represents one of the first naviculoid diatoms of limnic origin. The essential criteria of this genus are: comparatively small cells with narrow girdle; simple alveolated rib system; areolae with a hymen in approximately medium position between relatively large sized foramina outside and inside of the valve; a single row of more or less irregular arranged areolae in close position to each other, on one or several of the copulae. The differences to supposed related genera are discussed.     

Phylogeny of nuclear-encoded plastid-targeted GAPDH gene supports separate origins for the peridinin- and the fucoxanthin derivative-containing plastids of dinoflagellates

Although most photosynthetic dinoflagellates have plastids with peridinin, the three dinoflagellate genera Karenia, Karlodinium, and Takayama possess anomalously pigmented plastids that contain fucoxanthin and its derivatives (19′-hexanoyloxy-fucoxanthin and 19′-butanoyloxy-fucoxanthin) instead of the peridinin. This pigment composition is similar to that of haptophytes. All peridinin-containing dinoflagellates investigated so far have at least two types of glyceraldehyde-3-phosphate dehydrogenase (GAPDH): cytosolic and plastid-targeted forms. In the present study, we cloned and sequenced genes encoding cytosolic and plastid-targeted GAPDH proteins from three species of the fucoxanthin derivative-containing dinoflagellates. Based on the molecular phylogeny, the plastid-targeted GAPDH genes of the fucoxanthin derivative-containing dinoflagellates were closely related to those of haptophyte algae rather than to the peridinin-containing dinoflagellates, while one of several cytosolic versions from the peridinin- and the fucoxanthin derivative-containing dinoflagellates are closely related to each other. Considering a previously reported theory that the plastid-targeted GAPDH from the peridinin-containing dinoflagellates originated by a gene duplication of the cytosolic form before the splitting of the dinoflagellate lineage, it is highly likely that the plastid-targeted GAPDH gene of the peridinin-containing dinoflagellates is original in this algal group and that in the fucoxanthin-containing dinoflagellates, the original plastid-targeted GAPDH was replaced by that of a haptophyte endosymbiont during a tertiary endosymbiosis. The present results strongly support the hypothesis that the plastids of the peridinin- and the fucoxanthin derivative-containing dinoflagellates are of separate origin.     

苏北盆地阜宁组钙质超微化石由来初探

对苏北盆地4个钻孔300余块心样品进行了分析,在阜宁组的8块样品中发现了钙质超微化石,计3属1种及3个比较种,化石属种单调,保存较 ,受到严重的溶蚀或增生,结合这些种类的分布时代和产出层位,很难排除苏北盆地阜宁组钙质超微化石再沉积的属性。     

THECATE HETEROPHIC DINOFLAGELLATES: FEEDING BEHAVIOR AND MECHANISMS1

The feeding of 18 species of thrcale hetrophi dinoflagellates from three genera (Protoperidininm, Oblea, Zygabikodinium) can all be described within one general framework. These species engulf diatoms and other prey with a pseudopod (herein terned a “Pallium”)which originates at the flagellar pore in the sulcus. The pallium is a highly plastic, membranous organ which rasily strethes to accommodate spines and many as 58 diatom cells in a chain. The contents of the phytoplanklon prey are liquified and transporued throughthe pallioum typically within 7 to 30 minutes of capture (although feeding may last 2 h) teaving an intact but empty cell wall or frustule. Thus far, with few exceptions, Protoperidinium specises have been observed feeding inly on diatoms, whereas two diplopsaloid species feed on dinoflagellates and prasinophytes as well. In four species from the three genera studied. a capture filament has been observed that connects the food to the dinoflagellate prior to extension of the pallium, sometimes allowing the cell to pull the food while swimming. A distinctive precapture swimming behavior is also deseribed foe six species, suggesting that the dinoflagellates are selective grazers.     

Ellobiopsids of the genus Thalassomyces are alveolates

Ellobiopsids are multinucleate protist parasites of aquatic crustaceans that possess a nutrient absorbing 'root' inside the host and reproductive structures that protrude through the carapace. Ellobiopsids have variously been affiliated with fungi, 'colorless algae', and dinoflagellates, although no morphological character has been identified that definitively allies them with any particular eukaryotic lineage. The arrangement of the trailing and circumferential flagella of the rarely observed bi-flagellated 'zoospore' is reminiscent of dinoflagellate flagellation, but a well-organized 'dinokaryotic nucleus' has never been observed. Using small subunit ribosomal RNA gene sequences from two species of Thalassomyces, phylogenetic analyses robustly place these ellobiopsid species among the alveolates (ciliates, apicomplexans, dinoflagellates and relatives) though without a clear affiliation to any established alveolate lineage. Our trees demonstrate that Thalassomyces fall within a dinoflagellate + apicomplexa + Perkinsidae + "marine alveolate group 1" clade, clustering most closely with dinoflagellates. However, the poor statistical support for branches within this region indicates that additional data will be needed to resolve relationships among these taxa.     

Sinophysis and Pseudophalacroma are distantly related to typical Dinophysoid dinoflagellates (Dinophysales, Dinophyceae)

Dinophysoid dinoflagellates are usually considered a large monophyletic group. Large subunit and small subunit (SSU) rDNA phylogenies suggest a basal position for Amphisoleniaceae (Amphisolenia,Triposolenia) with respect to two sister groups, one containing most Phalacroma species plus Oxyphysis and the other Dinophysis,Ornithocercus, Dinophysoid dinoflagellates are usually considered a large monophyletic group. Large subunit and small subunit (SSU) rDNA phylogenies suggest a basal position for Amphisoleniaceae (Amphisolenia,Triposolenia) with respect to two sister groups, one containing most Phalacroma species plus Oxyphysis and the other Dinophysis,Ornithocercus, Histioneis,Citharistes and some Phalacroma species. We provide here new SSU rDNA sequences of Pseudophalacroma (pelagic) and Sinophysis (the only benthic dinophysoid genus). Molecular phylogenies support that they are very divergent with respect to the main clade of Dinophysales. Additional molecular markers of these two key genera are needed to elucidate the evolutionary relations among the dinophysoid dinoflagellates. Histioneis,Citharistes and some Phalacroma species. We provide here new SSU rDNA sequences of Pseudophalacroma (pelagic) and Sinophysis (the only benthic dinophysoid genus). Molecular phylogenies support that they are very divergent with respect to the main clade of Dinophysales. Additional molecular markers of these two key genera are needed to elucidate the evolutionary relations among the dinophysoid dinoflagellates.     

An enigmatic GAPDH gene in the symbiotic dinoflagellate genus Symbiodinium and its related species (the order Suessiales): possible lateral gene transfer between two eukaryotic algae, dinoflagellate and euglenophyte

A group of unicellular eukaryotic algae, the dinoflagellates, are known to possess two types of gene for glyceraldehyde-3-phosphate dehydrogenase (GAPDH). An enzyme encoded by one type of gene possibly plays a key role in the glycolytic pathway of the cytosol and the other in the Calvin cycle of plastids. In the present study, an additional type of GAPDH gene (GapC3) was found in the symbiotic dinoflagellates, Symbiodinium spp. and their related species, Gymnodinium simplex and Polarella glacialis, all of which belong to the order Suessiales. Since no intracellular translocation signal is found at both amino- and carboxy-termini of its deduced amino acid sequence, the protein is predicted to function in the cytosol. However, it may not be involved in glycolysis due to the presence of an amino acid signature that allows binding for NADP⁺. It is likely that dinoflagellate species, other than Suessiales investigated in this study, lack this type of GAPDH. Phylogenetic analysis placed GapC3 from the Suessialean species firmly in the clade composed of GAPDH from spirochetes, euglenophytes (cytosolic type) and kinetoplastids (glycosomal type). Specifically, this enigmatic GAPDH gene in dinoflagellates was closely related to its cytosolic counterpart in euglenophytes. It has been previously reported that plastid-targeted (Calvin cycle) GAPDH genes of the dinoflagellates Pyrocystis spp. and that of the euglenophyte Euglena gracilis also seem to share a common ancestor. It appears highly likely that at least two genes (cytosolic and plastid-targeted GAPDH genes) have been laterally transferred between these two eukaryotic algal groups.     

Diversity, distribution, and new phylogenetic information of calcareous dinoflagellates from the China Sea

Calcareous dinoflagellates have been recorded from subarctic to tropical areas, inhabiting both neritic and oceanic regions. In the present study we analyse 12 sediment samples from the China Sea to establish the existence of calcareous dinoflagellates in this area. A total of 11 calcareous dinoflagellate species were recorded, among them, three genera (Calciodinellum, Leonella, Posoniella) and seven species (Calciodinellum albatrosianum, C. levantinum, C. operosum, Leonella granifera, Posoniella tricarinel...     

Re-classification of Pheopolykrikos hartmannii as Polykrikos (Dinophyceae) based partly on the ultrastructure of complex extrusomes

Athecate, pseudocolony-forming dinoflagellates have been classified within two genera of polykrikoids, Polykrikos and Pheopolykrikos, and different views about the boundaries and composition of these genera have been expressed in the literature. The photosynthetic polykrikoid Pheopolykrikos hartmannii, for instance, was originally described within Polykrikos and is now known to branch closely with several Polykrikos species in molecular phylogenetic analyses of ribosomal gene sequences. In this study, we report the first ultrastructural data for this species and demonstrate that Ph. hartmannii has all of the features that characterize the genus Polykrikos, including the synapomorphic “taeniocyst-nematocyst complex”. We also demonstrate that the ultrastructure of the chloroplasts in Ph. hartmannii conforms to the usual peridinin-containing chloroplasts of most photosynthetic dinoflagellates, which improves inferences about the origin(s) and evolution of photosynthesis within the genus. After taking into account all of the ultrastructural data on polykrikoids presented here and in the literature, this species is re-classified to its original status as Polykrikos hartmannii.     

Thysanopterans of the generic group Anaphothrips (Thripidae: Thripinae) with emphasis in Central America

A taxonomic revision and phylogenetic analysis of the generic group Anaphothrips are presented. Several genera in Central America are closely related to this generic group. Based on the analysis of characters and its possible evolution, the new genus Nakaharathrips has been segregated from Anaphothrips, and the taxonomic status of the subspecies of Aurantothrips has been changed to the species level. The phylogenetic analysis shows a close relationship between the genera Anaphothrips, Ranjana, Nakaharathrips n.gen., Aurantothrips, Nicolemma n.gen., Ameranathrips, Baileyothrips and Gonzalezya n.gen., where the first lineage is formed by the genera (Ranjana (Aurantothrips+Nicolemma)) and the second lineage contains the genera [(Anaphothrips+Nakaharathrips)(Baileyothrips (Ameranathrips+Gonzalezya)].     

Environmental barcoding reveals massive dinoflagellate diversity in marine environments

Background

Dinoflagellates are an ecologically important group of protists with important functions as primary producers, coral symbionts and in toxic red tides. Although widely studied, the natural diversity of dinoflagellates is not well known. DNA barcoding has been utilized successfully for many protist groups. We used this approach to systematically sample known “species”, as a reference to measure the natural diversity in three marine environments.

Methodology/Principal Findings

In this study, we assembled a large cytochrome c oxidase 1 (COI) barcode database from 8 public algal culture collections plus 3 private collections worldwide resulting in 336 individual barcodes linked to specific cultures. We demonstrate that COI can identify to the species level in 15 dinoflagellate genera, generally in agreement with existing species names. Exceptions were found in species belonging to genera that were generally already known to be taxonomically challenging, such as Alexandrium or Symbiodinium. Using this barcode database as a baseline for cultured dinoflagellate diversity, we investigated the natural diversity in three diverse marine environments (Northeast Pacific, Northwest Atlantic, and Caribbean), including an evaluation of single-cell barcoding to identify uncultivated groups. From all three environments, the great majority of barcodes were not represented by any known cultured dinoflagellate, and we also observed an explosion in the diversity of genera that previously contained a modest number of known species, belonging to Kareniaceae. In total, 91.5% of non-identical environmental barcodes represent distinct species, but only 51 out of 603 unique environmental barcodes could be linked to cultured species using a conservative cut-off based on distances between cultured species.

Conclusions/Significance

COI barcoding was successful in identifying species from 70% of cultured genera. When applied to environmental samples, it revealed a massive amount of natural diversity in dinoflagellates. This highlights the extent to which we underestimate microbial diversity in the environment.     

Evolution of pipoid frogs:intergeneric relationships of the aquatic frog family Pipidae (Anura)

The 27 species of the aquatic frog family Pipidae are currently arranged in four genera: Xenopus (15 species), Hymenochirus (four species), and the poorly known genus Pseudhymenochirus (one species) occur in Africa; Pipa (seven species) is found in South America and lower Central America. Despite extensive work on the biology of Xenopus from various disciplines, the evolutionary relationships of Xenopus to other pipids have not been resolved. Phylogenetic analyis of morphological features of pipid frogs indicates that, contrary to earlier opinions, Hymenochirus and Pipa are closest relatives (sister-groups); these genera are placed in the subfamily Pipinae. Also, the currently recognized species of Xenopus do not form a natural group; the species tropicalis and epitropicalis are more closely related to Hymenochirus + Pipa than to the remaining species of Xenopus . The two discordant species are transferred to the genus Silurana , which is relegated to the new subfamily Siluraninae; it is the sister-group of the Pipinae. The remaining species of Xenopus constitute a monophyletic group that is placed in the subfamily Xenopodinae as the sister-group of the other genera of pipids.     

Jurassic Dinoflagellate Cysts with Epitractal Archaeopyles

The history of study of these dinoflagellates is reviewed and emended diagnoses are proposed for the genera Ctenidodinium and Dichadogonyaulax. A new species, Dichadogonyaulax sellwoodii, is described and illustrated from the Bathonian of the Isle of Skye, Scotland. The new combination Dichadogonyaulax norrisii (Pocock, 1972) is proposed and it is considered that forms described by Gocht (1970) as Ctenidodinium pachydermum (Deflandre, 1938) may in fact be'attributable to Pocock's species. The species Ctenidodinium continuum Gocht, 1970, is briefly discussed and other Jurassic species attributable to these two genera are listed.     

Sterols of the syndinian dinoflagellate Amoebophrya sp., a parasite of the dinoflagellate Alexandrium tamarense (Dinophyceae)

Several harmful photosynthetic dinoflagellates have been examined over past decades for unique chemical biomarker sterols. Little emphasis has been placed on important heterotrophic genera, such as Amoebophrya, an obligate, intracellular parasite of other, often harmful, dinoflagellates with the ability to control host populations naturally. Therefore, the sterol composition of Amoebophrya was examined throughout the course of an infective cycle within its host dinoflagellate, Alexandrium tamarense, with the primary intent of identifying potential sterol biomarkers. Amoebophrya possessed two primary C(27) sterols, cholesterol and cholesta-5,22Z-dien-3beta-ol (cis-22-dehydrocholesterol), which are not unique to this genus, but were found in high relative percentages that are uncommon to other genera of dinoflagellates. Because the host also possesses cholesterol as one of its major sterols, carbon-stable isotope ratio characterization of cholesterol was performed in order to determine whether it was produced by Amoebophrya or derived intact from the host. Results indicated that cholesterol was not derived intact from the host. A comparison of the sterol profile of Amoebophrya to published sterol profiles of phylogenetic relatives revealed that its sterol profile most closely resembles that of the (proto)dinoflagellate Oxyrrhis marina rather than other extant genera.     

Studies on Kuckuckia spinosa (Fucophyceae, Sorocarpaceae): life history, temperature gradient experiments, and synonymy

Kuckuckia spinosa and Kuckuckia kylinii are distinguished mainly by the presence of basally sheathed true hairs in the latter. However, culture studies have shown that the sheath is an ephemeral structure as it splits, breaks off, and the basal remnant disintegrates and disappears eventually. Therefore, Kuckuckia kylinii gradually develops into Kuckuckia spinosa , also with regard to filament diameter. Consequently, the two species are merged with priority to K. spinosa. The life history is of the direct type as the swarmers from the plurilocular sporangia develop by immediate differentiation into plants similar to the mother plant. It has been confirmed experimentally that this species belongs to the warm temperate Mediterranean-Atlantic group with a southern reproductive boundary close to 25°C and a northern reproductive boundary close to the 10°C summer isotherms. This is the first report of this species from the Canary Islands.