Evolutionary patterns in the antR-Cor gene in the dwarf dogwood complex (Cornus, Cornaceae)

The evolutionary pattern of the myc-like anthocyanin regulatory gene antR-Cor was examined in the dwarf dogwood species complex (Cornus Subgenus Arctocrania) that contains two diploid species (C. canadensis and C. suecica), their putative hybrids with intermediate phenotypes, and a tetraploid derivative (C. unalaschkensis). Full-length sequences of this gene (∼4 kb) were sequenced and characterized for 47 dwarf dogwood samples representing all taxa categories from 43 sites in the Pacific Northwest. Analysis of nucleotide diversity indicated departures from neutral evolution, due most likely to local population structure. Neighbor-joining and haplotype network analyses show that sequences from the tetraploid and diploid intermediates are much more strongly diverged from C. suecica than from C. canadensis, and that the intermediate phenotypes may represent an ancestral group to C. canadensis rather than interspecific hybrids. Seven amino acid mutations that are potentially linked to myc-like anthocyanin regulatory gene function correlate with petal colors differences that characterize the divergence between two diploid species and the tetraploid species in this complex. The evidence provides a working hypothesis for testing the role of the gene in speciation and its link to the petal coloration. Sequencing and analysis of additional nuclear genes will be necessary to resolve questions about the evolution of the dwarf dogwood complex.     

Microsatellites from kousa dogwood (Cornus kousa)

Microsatellite loci were identified from Cornus kousa'National'. Primer pairs for 86 loci were developed and of these, eight were optimized and screened using genomic DNA from 22 kousa cultivars. All optimized loci were polymorphic and the number of alleles per locus ranged from three to 17. Observed heterozygosity ranged from 0 to 0.3 and expected heterozygosity ranged from 0.38 to 0.91. These microsatellites will be useful in population studies, and a breeding programme for cultivar development of Cornus species.     

Physiological responses of dogwood (Cornus florida) to infestation by the dogwood borer (Thamnosphecia scitula)

Studies of a healthy dogwood tree ( Cornus florida ) and one suffering from a chronic infestation of Thamnosphecia scitula revealed some physiological responses of dogwood to insect damage. In high light the stomatal resistances, measured with a diffusion porometer, of leaves from the infested tree were more than double those of leaves from the healthy tree, indicating that the stomata were not open as wide in the infested tree. The greater stomatal resistance and the curling of leaves from the infested tree implied a deficiency of water, but measurements with a pressure chamber revealed only slight differences in dehydration between the two trees. Furthermore, the leaf curling was not relieved by allowing infested leaves to absorb water and attain full turgor. Leaves from the infested tree contained 35 % more reducing sugars and 63 % more sucrose, but only about half the nitrogen and ash of the healthy counterparts. Photosynthesis was significantly depressed, but dark respiration was not modified in leaves of infested compared with healthy trees. Leaves from the infested tree were 85 % as large and exhibited a 35 % greater specific leaf weight than those from the healthy tree. The conductance of water by stems from the infested tree was only 61–78 % of that by the healthy tree. It is suggested that the inferred disruption of the vascular system by insect activity alters the distribution of minerals and metabolites, hastens senescence and stomatal closure, and modifies growth by diminishing stem conductance, slowing photosynthesis, reducing leaf area, and changing leaf morphology.     

Branching Principles Governing the Architecture of Cornus kousa (Cornaceae)

The complex structure of the crown of Cornus kousa, generallyfive-forked in vegetative branching and two-forked in reproductivebranching, is analysed quantitatively and described by two basicbranching principles: decussate phyllotaxy and the resettingrule for planes of branching. Most Cornus species have opposite,decussate phyllotaxis. The leaf pair (with axillary buds) definesthe branching plane of a node. Because of regular phyllotaxis,the fundamental branching pattern is that every branching planealong an axis is perpendicular to the preceding one. However,the first node of a lateral horizontal shoot always has a horizontalbranching plane; we term this the resetting rule. We observedthat resetting occurs when the first nodes initiated in thevertical plane are repositioned by a twisting of their firstinternodes. All later nodes alternate directions, i.e. showusual decussate alternation. Foliage leaf nodes usually producethree-forked branchings. When vegetative winter buds are formed,a foliar node and adjacent scale leaf node produce a five-forkedbranching. When reproductive winter buds with a terminal inflorescenceare formed, the last foliar node and two adjacent scale leafnodes can produce a variety of branchings but usually producean equal two-forked branching. To understand better the architecturein C. kousa, we contrast it with C. capitata which does notproduce buds with scale leaves and whose vegetative nodes areclearly separated. Copyright 1999 Annals of Botany Company Branching pattern, Cornaceae, Cornus kousa, decussate branching, dogwood, Japanese strawberry tree, tree architecture, tree geometry.     

A two-generation analysis of pollen pool genetic structure in flowering dogwood, Cornus florida (Cornaceae), in the Missouri Ozarks

Anthropogenic landscape change can disrupt gene flow. As part of the Missouri Ozark Forest Ecosystem Project, this study examined whether silvicultural practices influence pollen-mediated gene movement in the insect-pollinated species, Cornus florida L., by comparing pollen pool structure (Φ(st)) among clear-cutting, selective cutting, and uncut regimes with the expectation that pollen movement should be least in the uncut regime. Using a sample of 1500 seedlings-10 each from 150 seed parents (43 in clear-cut, 74 in selective, and 33 in control sites) from six sites (each ranging from 266 to 527 ha), eight allozyme loci were analyzed with a pollen pool structure approach known as TwoGener (Smouse et al., 2001; Evolution 55: 260-271). This analysis revealed that pollen pool structure was less in clear-cut (Φ(C) = 0.090, P < 0.001) than in uncut areas (Φ(U) = 0.174, P < 0.001), with selective-cut intermediate (Φ(S) = 0.125, P < 0.001). These estimates translate into more effective pollen donors (N(ep)) in clear-cut (N(ep) = 5.56) and selective-cut (N(ep) = 4.00) areas than in uncut areas (N(ep) = 2.87). We demonstrate that Φ(C) ≤ Φ(S) ≤ Φ(U), with Φ(C) significantly smaller than Φ(U) (P < 0.034). The findings imply that, as long as a sufficiently large number of seed parents remain to provide adequate reproduction and to avoid a genetic bottleneck in the effective number of mothers, silvicultural management may not negatively affect the effective number of pollen parents, and hence subsequent genetic diversity in Cornus florida.     

Micropropagation of flowering dogwood (Cornus florida) from seedlings

A method for regenerating whole plants from nodal (axillary bud) cultures of seedlings was developed for flowering dogwood (Cornus florida L.). The seed source significantly influenced the rate of proliferation, although cultures initiated from each of the seven mother trees produced some shoots. Woody plant medium (WPM) was superior to either Murashige and Skoog or Schenk and Hildebrandt basal medium. 6-Benzyladenine (BA) at 2.2 or 4.4 m stimulated the generation of significantly more useable shoots (1 cm) compared to all other concentrations (0.5–22.5 m tested. Thidiazuron (TDZ) at 0.6 and 1.1 m supported proliferation, but strongly inhibited shoot elongation. TDZ initiated cultures transferred to medium containing 4.4 m BA produced usable shoots after five additional subcultures. Shoots generated adventitious roots when exposed to either a 12-h pulse of relatively high concentrations (246–1230 m or continuous lower concentrations (0.5–49.0 m of indolebutyric acid (IBA) for longer periods. Microshoots produced the significantly greatest number of roots when subjected to 4.9 m IBA in WPM over a 4-week period. Whole plants were acclimatized to the laboratory conditions and subsequently to the greenhouse. The methodology described here should be useful in a breeding program by supplying multiple copies of unique, recombinant genotypes.     

Phylogeny-based developmental analyses illuminate evolution of inflorescence architectures in dogwoods (Cornus s. l., Cornaceae)

? Inflorescence architecture is important to angiosperm reproduction, but our knowledge of the developmental basis underlying the evolution of inflorescence architectures is limited. Using a phylogeny-based comparative analysis of developmental pathways, we tested the long-standing hypothesis that umbel evolved from elongated inflorescences by suppression of inflorescence branches, while head evolved from umbels by suppression of pedicels. ? The developmental pathways of six species of Cornus producing different inflorescence types were characterized by scanning electron microscopy (SEM) and histological analysis. Critical developmental events were traced over the molecular phylogeny to identify evolutionary changes leading to the formation of umbels and heads using methods accounting for evolutionary time and phylogenetic uncertainty. ? We defined 24 developmental events describing the developmental progression of the different inflorescence types. The evolutionary transition from paniculate cymes to umbels and heads required alterations of seven developmental events occurring at different evolutionary times. ? Our results indicate that heads and umbels evolved independently in Cornus from elongated forms via an umbellate dichasium ancestor and this process involved several independent changes. Our findings shed novel insights into head and umbel evolution concealed by outer morphology. Our work illustrates the importance of combining developmental and phylogenetic data to better define morphological evolutionary processes.     

Fruit set,fruit reduction,and fruiting strategy in Cornus sanguinea (Cornaceae)

We studied various aspects of the fruiting biology of Cornus sanguinea (Cornaceae), a fleshy-fruit-producing deciduous shrub, in four populations in northwest Spain. One population was studied over a 5-yr period (1989-1994), and the remaining populations in 1994 only. Fruit-set level varied among years (range 11-18%) and among populations (range 8-22%), but was in all cases low. Within plants, fruit-set level did not vary significantly among inflorescences, indicating that inflorescence fruit set is independent of inflorescence position and inflorescence, phenology. To investigate the function of surplus flowers, we carried out flower removal experiments. Inflorescence fruit-set level was unaffected by removal of up to =75% of flowers. These results suggest that Cornus sanguinea regulates its fruit-set level via plasticity in the number of fruits aborted: if flower mortality has been high, fewer fruits will be aborted. Within the inflorescence, surplus flowers thus act as insurance against flower loss.     

Metabolic inhibition of root water flow in red-osier dogwood (Cornus stolonifera) seedlings.

The short-term effects of sodium azide (NaN(3)) on water flow in red-osier dogwood (Cornus stolonifera Michx.) seedlings were examined in excised roots at a constant pressure of 0.3 MPa. NaN(3) significantly decreased root water flow rates (Q(v)). It also induced a significant reduction in root respiration and reduced stomatal conductance to a greater extent in intact seedlings than in excised shoots. Apoplastic flow of water increased with the NaN(3)-induced decreases in Q(v). Mercuric chloride (HgCl(2)) was also used to characterize the water flow responses and respiration of dogwood roots. Similarly to NaN(3), 0.1 and 0.3 mM HgCl(2) decreased root respiration rates and Q(v). The lower, 0.05 mM HgCl(2) treatment, reduced Q(v), but had no significant effect on root oxygen uptake. The reduction of Q(v) in HgCl(2)-treated plants was only partly reversed by 50 mM mercaptoethanol. The mercurial inhibition of Q(v) suggested the presence of Hg-sensitive water channels in dogwood roots. The results indicate that root-absorbed NaN(3) metabolically inhibited water channel activities in roots and in shoots and resulted in stomatal closure. It is suggested that the inhibition of respiration that occurs in plants stressed with environmental factors such as flooding, cold soils, and drought may be responsible for the closure of water channels in root cells and inhibition of root water flow.     

The effect of anthracnose (Discula destructiva) infection on plant-herbivore interactions in dogwood (Cornus florida)

The natural occurrence of dogwood anthracnose (Discula destructiva) on young dogwood seedlings planted in different microenvironments in the southern Appalachian Mountains provided an opportunity to examine the effects of biotic stress on phenolic defense and insect herbivory. Dogwood trees planted in forest understory, canopy gaps, and along forest edge sustained high levels of infection and mortality. In contrast, trees planted in full sun and under shade cloth in an adjacent open field sustained much lower levels of infection and no mortality. No consistant relationships were present between anthracnose infection, phenolic defenses and herbivore performance. Nevertheless, the tendency for moderately infected dogwood saplings to have higher levels of plant tannins than uninfected trees may suggest an immune response. Insect herbivory was relatively unaffected by the degree of anthracnose infection.     

五种国产Lai木属（广义）植物的核型

对分布于我国的Lai木属Cornus L.(广义）4个主要类群的5种植物进行了细胞学研究。结果表明,这5种植物的染色体数目和核型分别为：灯台树C.controversa Hemsl.2n=20=2m 8sm 10st;红瑞木C.alba L.2n=22=8sm 12st 2t;毛Lai C.waltari Wanger.2n=22=8sm 14st(0-2SAT);山茱萸C.officinalis Seib.et Zucc.2n=18-8m 10sm(0-2SAT);四照花（变种）C.kousa var.chinensis Osborn 2n=22=2sm 6st(0-2SAT) 14t.     

Competitive uptake and phytomonitoring of chlorinated contaminant mixtures by Redosier dogwood (Cornus sericea)

Plant uptake is an important process in phytoremediation. The robust uptake of volatile organic compounds (VOCs) by plants offers opportunities to establish quantitative relationships between VOCs in plant tissues and in groundwater for the purpose of phytoscreening or phytomonitoring. Most previous research pertaining to phytoremediation neglected the competitive effects of co-contaminants on the uptake of VOCs by plants, yet recent studies appeared to indicate high competitive effects of co-contamination. This study investigated the competitive uptake of three chlorinated compounds in the presence and absence of other co-contaminants by Redosier dogwood in a greenhouse and examined the implications of this competitive phenomenon for phytomonitoring of contaminant mixtures in groundwater. Concentrations of VOCs in stems decreased along the height in both single and bi-solute systems, in agreement with previous observations in the literature. Examination of the VOCs in single and bi-solute systems showed that concentrations of individual compounds are comparable in single and bi-solute systems, yet the ratios of contaminants along the height in bi-solute systems revealed interesting trends. TCE/PCE ratio increased along height while TCE/1,1,2-TCA ratio was roughly constant. The result indicated that sampling point as well as the physicochemical properties of co-contaminants is highly important in phytomonitoring of contaminant mixtures.     

Molecular evolution of PIII-SVMP and RGD disintegrin genes from the genus Crotalus

Several types of disintegrins have been isolated from Crotalus spp rattlesnakes, including RGD disintegrins, and PIII-SVMPs. We isolated six cDNAs from snake venom glands using RT-PCR. Three RGD disintegrins (atroxatin, mojastin, and viridistatin) and three PIII-SVMPs (catroriarin, scutiarin, and viristiarin) cDNAs were isolated from the rattlesnakes Crotalus atrox, Crotalus scutulatus scutulatus, and Crotalus viridis viridis, respectively. Atroxatin and Viridistatin shared 90% amino acid identity to each other, and 87% identity to Mojastin. Scutiarin and Viristiarin were identical. All PIII-SVMPs isolated in this study shared the highest amino acid identity with Catrocollastatin. cDNA and protein sequences for RGD disintegrins, one MVD disintegrin, and PIII-SVMPs of the genus Crotalus (present in the NCBI database), were used in phylogenetic analysis. Neighbor-joining analysis of PIII-SVMP and RGD/MVD disintegrin-coding DNA sequences showed that these groups of genes separate into separate clades. A Phi(ST) pairwise comparison and Analysis of Molecular Variance (AMOVA) between PIII-SVMPs and RGD/MVD disintegrins showed significant genetic differences. Mutations observed in ten of the cDNAs analyzed did not affect Cys-coding sequences. Our K(A)/K(S) data suggest that rapid evolution occurred between the genes coding for PIII-SVMPs resulting, in the production of RGD disintegrin-coding genes. However, once these genes diverged, mutations in the PIII-SVMP-coding genes were accumulated less frequently.     

Molecular phylogenetics and evolution of the endemic Hawaiian genus Adenophorus (Grammitidaceae)

Recent studies of the phylogeny of several groups of native Hawaiian vascular plants have led to significant insights into the origin and evolution of important elements of the Hawaiian flora. No groups of Hawaiian pteridophytes have been subjected previously to rigorous phylogenetic analysis. We conducted a molecular phylogenetic analysis of the endemic Hawaiian fern genus Adenophorus employing DNA sequence variation from three cpDNA fragments: rbcL, atpbeta, and the trnL-trnF intergenic spacer (IGS). In the phylogenetic analyses we employed maximum parsimony and Bayesian inference. Bayesian phylogenetic inference often provided stronger support for hypothetical relationships than did nonparametric bootstrap analyses. Although phylogenetic analyses of individual DNA fragments resulted in different patterns of relationships among species and varying levels of support for various clades, a combined analysis of all three sets of sequences produced one, strongly supported phylogenetic hypothesis. The primary features of that hypothesis are: (1) Adenophorus is monophyletic; (2) subgenus Oligadenus is paraphyletic; (3) the enigmatic endemic Hawaiian species Grammitis tenella is strongly supported as the sister taxon to Adenophorus; (4) highly divided leaf blades are evolutionarily derived in the group and simple leaves are ancestral; and, (5) the biogeographical origin of the common ancestor of the Adenophorus-G. tenella clade remains unresolved, although a neotropical origin seems most likely.     

Molecular evolution of the ligands of the insulin-signaling pathway: dilp genes in the genus Drosophila

Drosophila melanogaster, unlike mammals, has seven insulin-like peptides (DILPS). In Drosophila, all seven genes (dilp1-7) are single copy in the 12 species studied, except for D. grimshawi with two tandem copies of dilp2. Our comparative analysis revealed that genes dilp1-dilp7 exhibit differential functional constraint, which is indicative of some functional divergence. Species of the subgenera Sophophora and Drosophila differ in some traits likely affected by the insulin-signaling pathway, such as adult body size. It is in the branch connecting the two subgenera that we found the footprint left by positive selection driving nonsynonymous changes at some dilp1 codons to fixation. Finally, the similar rate at which the two dilp2 copies of D. grimshawi have evolved since their duplication and the presence of a putative regulatory region highly conserved between the two paralogs would suggest that both copies were preserved either because of subfunctionalization or dose dependency rather than by the neofunctionalization of one of the two copies.     

Molecular evolution of the deuterolysin (M35) family genes in Coccidioides

Coccidioides is a primary fungal pathogen of humans, causing life-threatening respiratory disease known as coccidioidomycosis (Valley fever) in immunocompromised individuals. Recently, Sharpton et al (2009) found that the deuterolysin (M35) family genes were significantly expanded in both the Coccidioides genus and in U. reesii, and that Coccidioides has acquired three more M35 family genes than U. reesii. In the present work, phylogenetic analyses based on a total of 28 M35 family genes using different alignments and tree-building methods consistently revealed five clades with high nodal supports. Interestingly, likelihood ratio tests suggested significant differences in selective pressure on the ancestral lineage of three additional duplicated M35 family genes from Coccidioides species compared to the other lineages in the phylogeny, which may be associated with novel functional adaptations of M35 family genes in the Coccidioides species, e.g., recent pathogenesis acquisition. Our study adds to the expanding view of M35 family gene evolution and functions as well as establishes a theoretical foundation for future experimental investigations.     

Effects of NaCl and Na2SO4 on red-osier dogwood (Cornus stolonifera Michx) seedlings

Sodium chloride and sodium sulfate are commonly present in extraction tailings waters produced as a result of surface mining and affect plants on reclaimed areas. Red-osier dogwood (Cornus stolonifera Michx) seedlings were demonstrated to be relatively resistant to these high salinity oil sands tailings waters. The objectives of this study were to compare the effects of Na₂SO₄ and NaCl, on growth, tissue ion content, water relations and gas exchange in red-osier dogwood (Cornus stolonifera Michx) seedlings. In the present study, red-osier dogwood seedlings were grown in aerated half-strength modified Hoagland's mineral solution containing 0, 25, 50 or 100 mM of NaCl or Na₂SO₄. After four weeks of treatment, plant dry weights decreased and the amount of Na⁺ in plant tissues increased with increasing salt concentration. Na⁺ tissue content was higher in plants treated with NaCl than Na₂SO₄ and it was greater in roots than shoots. However, Cl^– concentration in the NaCl treated plants was higher in shoots than in roots. The decrease in stomatal conductance and photosynthetic rates observed in presence of salts is likely to contribute to the growth reduction. Our results suggest that red-osier dogwood is able to control the transport of Na⁺ from roots to shoots when external concentrations are 50 mM or less.     

Molecular evolution of glutathione S-transferases in the genus Drosophila

As classical phase II detoxification enzymes, glutathione S-transferases (GSTs) have been implicated in insecticide resistance and may have evolved in response to toxins in the niche-defining feeding substrates of Drosophila species. We have annotated the GST genes of the 12 Drosophila species with recently sequenced genomes and analyzed their molecular evolution. Gene copy number variation is attributable mainly to unequal crossing-over events in the large delta and epsilon clusters. Within these gene clusters there are also GST genes with slowly diverging orthologs. This implies that they have their own unique functions or have spatial/temporal expression patterns that impose significant selective constraints. Searches for positively selected sites within the GSTs identified G171K in GSTD1, a protein that has previously been shown to be capable of metabolizing the insecticide DDT. We find that the same radical substitution (G171K) in the substrate-binding domain has occurred at least three times in the Drosophila radiation. Homology-modeling places site 171 distant from the active site but adjacent to an alternative DDT-binding site. We propose that the parallel evolution observed at this site is an adaptive response to an environmental toxin and that sequencing of historical alleles suggests that this toxin was not a synthetic insecticide.