Phylogenetic Analysis of the Gut Bacterial Microflora of the Fungus-Growing Termite Odontotermes formosanus

We constructed a bacterial 16S rRNA gene clone library from the gut microbial community of O. formosanus and phylogenetically analyzed it in order to contribute to the evolutional study of digestive symbiosis and method development for termite control. After screening by restriction fragment length polymorphism (RFLP) analysis, 56 out of 280 clones with unique RFLP patterns were sequenced and phylogenetically analyzed. The representative phylotypes were affiliated to four phylogenetic groups, Firmicutes, the Bacteroidetes/Chlorobi group, Proteobacteria, and Actinobacteria of the domain Bacteira. No one clone affiliated with the phylum Spirochaetes was identified, in contrast to the case of wood-feeding termites. The phylogenetic analysis revealed that nearly half of the representative clones (25 phylotypes) formed monophyletic clusters with clones obtained from other termite species, especially with the sequences retrieved from fungus-growing termites. These results indicate that the presence of termite-specific bacterial lineages implies a coevolutional relationship of gut microbes and host termites.     

Influence of Feed Components on Symbiotic Bacterial Community Structure in the Gut of the Wood-Feeding Higher Termite Nasutitermes takasagoensis

The influence of carbon sources on bacterial community structure in the gut of the wood-feeding higher termite Nasutitermes takasagoensis was investigated. 16S rRNA gene sequencing and terminal-restriction fragment length polymorphism (T-RFLP) analyses revealed that the bacterial community structure changed markedly depending on feed components at the phylum level. Spirochaetes was predominant in the clone libraries from wood- and wood powder-fed termites, whereas Bacteroidetes was the largest group in the libraries from xylan-, cellobiose-, and glucose-fed termites, and Firmicutes was predominant in the library from xylose-fed termites. In addition, clones belonging to the phylum Termite Group I (TG1) were found in the library from xylose-fed termites. Our results indicate that the symbiotic relationship between termite and gut microorganisms is not very strong or stable over a short time, and that termite gut microbial community structures vary depending on components of the feeds.     

红裸须摇蚊幼虫肠道可培养细菌多样性及耐受重金属功能初步研究

红裸须摇蚊Propsilocerus akamusi为华北地区常见耐污种,广泛分布于各种水体中。本研究采用传统培养法对4龄红裸须摇蚊幼虫肠道内细菌种类进行分离,利用16S rRNA基因序列分析比对,结合菌落形态、系统进化分析等方法进一步鉴定菌株种类,同时探究可培养菌株对重金属（铜、镍）的耐受情况。结果表明,红裸须摇蚊幼虫在重金属铜暴露下的24 h-LC50、48 h-LC50、72 h-LC50、96 h-LC50分别为6304.86、403.59、29.33以及14.43 mmol/L,在重金属镍暴露下的24 h-LC50、48 h-LC50、72 h-LC50、96 h-LC50分别为339.52、182.18、102.59以及60.94 mmol/L。利用LB、NA、BHI、MC 4种培养基,从幼虫肠道分离纯化到16种不同遗传型细菌,分属2门 9科16属,其中优势菌门为变形菌门Proteobacteria。另外,丛毛单胞菌科Comamonadaceae丛毛单胞菌属Comamonas丛毛单胞菌Comamonas sp.对重金属铜和镍有良好耐受性。通过研究红裸须摇蚊幼虫肠道可培养细菌群落组成以及重金属胁迫下摇蚊幼虫肠道细菌群落生长情况,可为水生昆虫肠道菌群资源库的开发提供了一定的思路,也可为筛选出具备重金属代谢功能的细菌资源奠定基础。     

A comparison of ammonia-oxidiser populations in eutrophic and oligotrophic basins of a large freshwater lake

A combination of PCR amplification and oligonucleotide probing was used to investigate the populations of ammonia-oxidisers of the -Proteobacteria in the eutrophic and oligotrophic basins of Lake Windermere, a large temperate lake in the English Lake District. Numbers of ammonia-oxidisers (MPN) in the Windermere lakewater were low (< 100 cells ml^–1) throughout the year with the exception of peaks in August, which coincided with stratification, and November in the South Basin where overturn may have introduced ammonia-oxidising bacteria into the water column. Sediment samples contained larger populations of ammonia oxidisers, usually ca. 10⁴ per g. dry weight, which remained relatively constant throughout the seasonal cycle in both Basins. DNA was recovered from lakewater and sediment samples and Nitrosospiraand N. europaea-eutrophalineage16S rRNA genes amplified in a nested PCR reaction, with confirmation of identity by oligonucleotide hybridisation. Nitrosospira 16S rDNA was readily detected in all samples and therefore found to be ubiquitous. In contrast, nitrosomonad DNA of the N. europaea-eutropha lineage could only be detected in the oligotrophic North Basin. Enrichment cultures of lakewater samples only exhibited nitrification at low (0.67 mM) and medium (5 mM) ammonium concentrations, whilst sediment enrichments nitrified at all concentrations tested including high (12.5 mM) ammonium medium. These data suggest that ammonia-oxidiser populations may be physiologically distinguished between lakewater and sediment, and that species distribution in a single lake is non-uniform.     

一株降解煤油菌株的筛选与鉴定

本文通过从污水处理厂活性污泥中分离得到一株高效降解轻油(煤油)细菌5092-2,通过形态学、16S rRNA鉴定该菌为Mangroveibacter sp.。进一步对其生长条件进行了研究,发现该菌在23℃到38℃、pH为5.0到9.0范围内生长无明显差异。在温度为35℃,pH 7.2~7.4,160 r/min培养7 d,菌株降解煤油的能力达到52.3%,具有进一步研究的价值。     

Task-specific distribution of the two worker castes in extranidal activities inMacrotermes bellicosus (Smeathman): Observation of behaviour during food acquisition

Summary Caste-specific division of labour can be observed in extranidal activities inMacrotermes bellicosus. Food is acquired through a sequence of tasks shared between the two worker castes. During the exploration phase, a network of subterranean galleries is built outwards from the nest, almost exclusively by minor workers. The frequency of excursions made by major workers during this building period is low, but increases significantly when food is needed by the colony. After a food-source has been discovered, it is hardly exploited by the minor workers and no recruitment occurs. They continue to construct galleries, while individuals which have contact with the food show local fidelity in their building activities within the gallery nearest to the food. After a single sporadic major worker accidentally comes across a food-source, the ratio of major to minor workers continually increases. New major workers aim for the food, bite off pieces and may transfer them to the minor workers. In general, only major workers are recruited after food has been discovered, and they then orientate towards the food-source more distinctly than the minor workers.     

快速评价肠道微生物的qPCR方法的建立

【背景】近些年,16S rRNA基因测序与宏基因组分析常用于肠道微生物病原体检测。【目的】为了使检测不受限于高成本与耗时长的问题,基于荧光探针的实时荧光定量PCR(real-time fluorescence quantitative PCR, qPCR),建立一种评估人类肠道微生物群组成的平台用于检测肠道微生物丰度。【方法】从公共数据库筛选10种肠道中普遍存在的微生物分类群,使用20个粪便样本验证为10种靶标所设计的特异性引物与探针,最后通过比较qPCR方法和16SrRNA基因测序技术的检测结果来评估该平台的有效性。【结果】10对引物及其探针对靶标分类群具有特异性并且在HITdb数据库中靶向菌种的覆盖率超过70%;样本检测结果的变异系数(coefficient of variation,CV)小于10%,证明了该方法具有很高的稳定性;qPCR方法检测样本中物种的相对丰度与16S rRNA基因序列生物信息学分析结果大部分具有显著相关性(P<0.05)。【结论】本研究根据HITdb数据库设计的靶向微生物群的引物和探针检测到的粪便样本中微生物的相对丰度结果与16S rRNA基因测序结...     

一株硫酸盐还原菌的分离鉴定和系统发育分析

从处理硫酸盐废水的厌氧折流板反应器中分离得到一株硫酸盐还原菌D11, 该菌株革兰氏反应阴性, 无芽孢, 菌体杆状稍有弯曲, 宽度在0.6 μm~0.8 μm, 长度在1.8 μm~3.3 μm之间, 有极生单鞭毛, 能运动, 接触酶阳性, 氧化酶阴性。菌株生长的pH范围介于6.0~8.0之间, 最适pH为7.0, 生长温度范围为25°C~37°C, 最适温度为30°C。能够以葡萄糖、蔗糖、乙酸、乳酸、乙醇和丙二醇为唯一碳源生长, 不能利用丙三醇、丁醇、琥珀酸和苹果酸。菌株DNA的G+C含量为62.7 mo