Kunitz-type trypsin inhibitor gene family in Arabidopsis and Populus trichocarpa and its expression response to wounding and herbivore in Populus nigra

Trypsin inhibitors (TIs) play important roles in plant defense against biotic stresses. In this work, we first characterized the KTI gene families in the herbaceous model system, Arabidopsis thaliana, and the woody model system, Populus trichocarpa. Genomic analysis of AtKTIs and PtKTIs including phylogenetic relationship, gene structure, and motif preservation was presented. The temporal and spatial expression pattern of AtKTI genes under biotic and abiotic stresses has been performed by mining the publicly available microarray data. Unlike Populus, the absence of AtKTI induction under herbivore attack suggested that AtKTIs may not be closely related to herbivore defense in this plant species. In order to assess the potential of PtKTI as target genes for genetic improvement of the biotic resistance in plant species of high economic impact, we isolated KTI complementary DNAs from Populus nigra on a genome-wide scale and analyzed their respective response to Apocheima cinerarius Erschoff and mechanical wounding. A basically similar subset of PnKTIs was shown to be rapidly induced by both treatments in this study, though quantitatively distinct. This study revealed a different collection of wound- and herbivore-induced P. nigra KTI genes from those reported previously for hybrid poplar infested with Malacosoma disstri. Our data demonstrated that Populus could deploy KTI genes actively and selectively in an insect-specific manner. While KTI genes constitute good candidates for genetic engineering to improve biotic resistance in transgenic plant, their selection should be herbivore-oriented to obtain sufficient effects.     

Identification and characterization of lineage-specific genes in Populus trichocarpa

Species- or lineage-specific genes can facilitate studying the unique characteristics of biological processes. Updated genome sequences in Populus trichocarpa were screened against thirty newly sequenced or resequenced plant genomes to identify a set of species-specific genes (PtSS). Forty PtSS genes have been isolated with no similarity to any sequence outside the P. trichocarpa genome, therefore have no annotated functions. Protein motif, intron/exon features, subcellular localization and gene expression were analyzed in these PtSS genes. Results reflect their basic genic characters, expression analysis and primary function exploration might provide insight to their possible involvements in lineage specific biological process in woody plants.     

Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling

The phytohormone abscisic acid (ABA) plays an essential role in adaptive stress responses. The hormone regulates, among others, the expression of numerous stress-responsive genes. From various promoter analyses, ABA-responsive elements (ABREs) have been determined and a number of ABRE binding factors have been isolated, although their in vivo roles are not known. Here we report that the ABRE binding factors ABF3 and ABF4 function in ABA signaling. The constitutive overexpression of ABF3 or ABF4 in Arabidopsis resulted in ABA hypersensitivity and other ABA-associated phenotypes. In addition, the transgenic plants exhibited reduced transpiration and enhanced drought tolerance. At the molecular level, altered expression of ABA/stress-regulated genes was observed. Furthermore, the temporal and spatial expression patterns of ABF3 and ABF4 were consistent with their suggested roles. Thus, our results provide strong in vivo evidence that ABF3 and ABF4 mediate stress-responsive ABA signaling.     

Molecular Characterization of Quinate and Shikimate Metabolism in Populus trichocarpa

The shikimate pathway leads to the biosynthesis of aromatic amino acids essential for protein biosynthesis and the production of a wide array of plant secondary metabolites. Among them, quinate is an astringent feeding deterrent that can be formed in a single step reaction from 3-dehydroquinate catalyzed by quinate dehydrogenase (QDH). 3-Dehydroquinate is also the substrate for shikimate biosynthesis through the sequential actions of dehydroquinate dehydratase (DQD) and shikimate dehydrogenase (SDH) contained in a single protein in plants. The reaction mechanism of QDH resembles that of SDH. The poplar genome encodes five DQD/SDH-like genes (Poptr1 to Poptr5), which have diverged into two distinct groups based on sequence analysis and protein structure prediction. In vitro biochemical assays proved that Poptr1 and -5 are true DQD/SDHs, whereas Poptr2 and -3 instead have QDH activity with only residual DQD/SDH activity. Poplar DQD/SDHs have distinct expression profiles suggesting separate roles in protein and lignin biosynthesis. Also, the QDH genes are differentially expressed. In summary, quinate (secondary metabolism) and shikimate (primary metabolism) metabolic activities are encoded by distinct members of the same gene family, each having different physiological functions.     

Potassium,calcium and magnesium antagonism in clones of Populus trichocarpa

Two clones of Populus trichocarpa varying in growth rate were grown in nutrient solutions with a range of K supply. In the leaves an antagonism between the levels of K and Ca+Mg was found, this was most extreme in the older leaves. Analysis of the contents of these elements in leaf vacuoles and cytoplasm suggests that in the vacuoles the total contents of K+Ca+Mg are controlled to maintain ionic and osmotic balance. At low K supply, the K deficit in the cytoplasm is not balance by accumulation of Ca and Mg, and it is suggested that other organic osmotica may accumulate. The regulation of K+Mg+Ca supplied to the leaves seems to be regulated by the roots and is not simple competition of ions for uptake sites at the plasmalemma.     

毛果杨 NLP 基因家族生物信息学分析与鉴定简

NLP基因家族是一类特殊的转录因子,豆科植物根瘤的形成依赖于该基因家族的存在,在非豆科植物中具有调节植物硝酸盐吸收以及同化的功能。通过对毛果杨（Populus trichocarpa）基因组的生物信息学分析,共鉴定出14个毛果杨NLP基因家族成员,这些成员具有低亲水性的特点,基因结构保守,都含有RWP-RK以及PB1两个保守结构域。通过细胞定位预测,所有成员都定位在细胞核中。直系同源与旁系同源进化分析显示,NLP基因家族成员在漫长的进化过程中经历了严格的选择。染色体定位分析表明,毛果杨NLP基因家族成员坐落在毛果杨9条染色体之上,成员数量的扩增来自于杨柳科染色体自身的扩增事件。芯片数据分析结果显示,NLP基因家族成员在嫩叶,根和雄花中表达,部分基因在木质部以及种子萌发过程之中表达,但所有成员均不在成熟叶片中表达。     

Overexpression of PtAnnexin1 from Populus trichocarpa enhances salt and drought tolerance in transgenic poplars

Tree Genetics & Genomes - High numbers of endemic plants exist in subtropical China, but there have been few investigations of the phylogeography and dynamic history for endemic tree species in...     

Extensive pollen flow in two ecologically contrasting populations of Populus trichocarpa

Pollen-mediated gene flow was measured in two populations of black cottonwood using direct (paternity analysis) and indirect (correlated paternity) methods. The Marchel site was an area with an approximate radius of 250 m in a large continuous stand growing in a mesic habitat in western Oregon. In contrast, the Vinson site was an area with a radius of approximately 10 km and consisted of small, disjunct and isolated stands in the high desert of eastern Oregon. Pollen immigration was extensive in both populations, and was higher in the Marchel site (0.54 ± 0.02) than in the substantially larger and more isolated Vinson site (0.32 ± 0.02). Pollen pool differentiation among mothers was approximately five times stronger in the Vinson population (Φ_FT = 0.253, N  = 27 mothers) than in the Marchel population (Φ_FT = 0.052, N  = 5 mothers). Pollen dispersal was modelled using a mixed dispersal curve that incorporated pollen immigration. Predicted pollination frequencies generated based on this curve were substantially more accurate than those based on the widely used exponential power dispersal curve. Male neighbourhood sizes ( sensu Wright 1946 ) estimated using paternity analysis and pollen pool differentiation were remarkably similar. They were three to five times smaller in the Vinson population, which reflected the substantial ecological and demographic differences between the two populations. When the same mathematical function was used, applying direct and indirect methods resulted in similar pollen dispersal curves, thus confirming the value of indirect methods as a viable lower-cost alternative to paternity analysis.