Properties of the Cytochrome c Oxidase Activity of Cytochrome b561 from Photoanaerobically Grown Rhodopseudomonas sphaeroides

Cytochrome b₅₆₁ from Rhodopseudomonas sphaeroides had cytochromec (c2) oxidase activity and a pH optimum at 6.0 for this activity.The activity was affected by the ionic strength of the reactionmixture. The apparent K_m and maximal velocity (V_max) valuesin the absence of addea salts were 14 µM and 120 nmoloxidized per min per mg protein for horse heart cytochrome c.Reduced horse heart cytochrome c was reoxidized in first-orderkinetics by this cytochrome b₅₆₁. The specific activity was0.7 s^–1 per mg protein at 20°C at the concentrationof 30 µMM cytochrome c. Activity was inhibited by KCN and NaN₃, but not by antimycin.The addition of a low concentration of KCN to the cytochromeb₅₆₁ produced a change in the absorption spectrum, evidencethat KCN interacts with the heme moiety of cytochrome b₅₆₁.Results of this and preceeding studies show that the cytochromeoxidase (cytochrome "o") described earlier (Sasaki et al. 1970)is cytochrome b₅₆₁. (Received May 16, 1983; Accepted September 8, 1983)     

Chromatographic separation of photosystems I and II from the thylakoid membrane isolated from a thermophilic blue-green alga

The thylakoid membrane of a thermophilic blue-green alga, Synechococcussp., was separated into four chlorophyll-containing fractionsby a single chromatographic manipulation with a diethylaminoethyl-cellulosecolumn after digitonin treatment. Photosystems I and II, orchlorophyll a forms, were unevenly distributed among the fourfractions, which were designated F-1, F-2, F-3 and F-4 in theorder of elution from the column. F-1 has a simple composition of the chlorophyll a form and totallylacks photochemical activity. This fraction may be an antennachlorophyll a-protein in the blue-green alga. F-2 is rich inshorter wavelength chlorophyll a forms and shows the three-bandedfluorescence emission spectrum characteristic of photosystemII at liquid nitrogen temperature. This fraction is highly activein 2,6-dichloroindophenol photoreduction and contains one photooxidizablecytochrome b₅₅₉ per 50–100 chlorophyll a, whereas theP-700 content is as low as one P-700 per 2,000 chlorophyll a.Thus, F-2 represents photosystem II in a highly purified state.F-3 is rich in photosystem I, since this fraction is inactivein 2,6-dichloroindophenol photoreduction, and contains one P-700per 200 chlorophyll a and smaller amounts of cytochrome b₅₅₉.Longer wavelength chlorophyll a forms are abundant and a peakat 730 nm is the most prominent in the low-temperature fluorescencespectrum in this fraction. F-4, which consists of larger membranefragments shows spectral and photochemical features similarto those of F-3. (Received August 8, 1979; )     

Identification of Stylar RNases Associated with Gametophytic Self-Incompatibility in Almond (Prunus dulcis)

Stylar proteins of 13 almond (Prunus dulcis) cultivars withknown S-genotypes were surveyed by IEF and 2D-PAGE combinedwith immunoblot and N-terminal amino acid sequence analysesto identify S-RNases associated with gametophytic self-incompatibility(SI) in this plant species. RNase activities corresponding toS_a and S_b, two of the four S-alleles tested, were identifiedby IEF and RNase activity staining. The S_a-RNase band reactedwith the anti-S₄serum prepared from Japanese pear (Pyrus serotina);no reaction with the antiserum was observed with the s_bRNaseband. When the s_a-RNase band was excised from an IEF gel stainedfor RNase activity, subjected to SDS-PAGE, and detected by immunoblotting,it appeared that this band consisted of a single protein thatreacted with the anti-s₄serum with M_r of about 28 kDa. With2D-PAGE and silver staining of the stylar extracts, all fourS-proteins could be successfully distinguished from each otherin the highly basic zone of the gel. Although S_b-, S_c-, andS_dproteins had roughly the same M_r of about 30 kDa, the S_c-proteinseemed to be slightly smaller than the S_b-protein and slightlylarger than the S_aprotein. In 2D-PAGE profiles as well, theS_a-protein had M_r of about 28 kDa, apparently smaller than theother three proteins. A bud sport, in which one of the two S-allelesof the original cultivar is impaired, was visualized as a lossof S_cprotein, which is consistent with the previous pollinationstudy. All four S-proteins reacted with the anti-S₄serum, probablybecause of the differing conformations of these S-proteins inthe IEF and 2D-PAGE gels. The S_a-protein in 2D-PAGE appearedto be identical to S_a-RNase in IEF; both bad the same M_r andwere reactive with the anti-S₄-serum. N-terminal amino acidsequence analysis of the four 5-proteins revealed that theywere highly homologous to each other and similar to the 5-RNasesof Malus, Pyrus, Scrophulariaceae, and Solanaceae. Taken together,RNases in the style are strongly suggested to be associatedwith the gametophytic SI of al- mond. This is the first reportidentofiying and characterizing S-RNase in almond. (Received July 11, 1996; Accepted December 26, 1996)     

The Isolation and Characterization of a Cytochrome b6f Complex from the Cyanobacterium Spirulina sp.

A cytochrome b₆f complex was isolated and purified from Spirulinasp. The complex was solubilized with n-heptyl ß-D-thioglucosideand chromatographed on a DEAE-Toyopearl 650M column. The purifiedcomplex contained a small amount of chlorophyll and carotenoid.At least four polypeptides were present in the complex: cytochromef (29 kDa), cytochrome b₆(23 kDa), iron-sulfur protein (ISP,23 kDa), and a 17 kDa polypeptide. Each polypeptide was separatedfrom the complex treated with 2-mercaptoethanol or urea. Theabsorption spectra of cytochrome b₆ and cytochrome f were similarto those of Anabaena and spinach as expected. The complex wasactive in supporting ubiquinol-cytochrome c oxidoreductase activity.Fifty percent inhibition of the activity was accomplished by1 µM dibromothymoquinone (DBMIB). The K_m values for ubiquinol-2and cytochrome c (horse heart) were 5.7 µM and 7.4 µM,respectively. (Received August 15, 1988; Accepted November 14, 1988)     

Changes in cytochrome contents and respiratory activity of Bacillus cereus Strain T during germination, vegetative growth and sporulation

Vegetative cells of Bacillus cereus Strain T contain cytochromeb-562, a minor b-type component, in addition to known components,cytochrome a+a₃, cytochrome b-557 and cytochrome c-551. Also,the spores contain low but definite amounts of cytochromes b-562and c-551, which were oxidized when the spores were shaken withair. Contents of cytochromes a, b and c per cell and per cellnitrogen, and the activity of glucose oxidation increased duringspore germination and elongation. During the stage precedingfirst cell division, cytochrome contents per cell increasedin parallel with the increase of cell nitrogen, while the activityof glucose oxidation decreased. During early exponential growth,the content of cytochrome b per cell nitrogen and respiratoryactivity with glucose again increased. When cells entered thesporulation stage, characterized by structural changes insidethe cells, the activity of glucose oxidation began to decrease,while that of acetate or succinate oxidation started to increase.During the sporulation process, the contents of the three cytochromecomponents continued to increase and reached the highest levelin cells containing completed spores, but the activity of respirationwith endogenous or added substrates was negligible in thesecells. (Received November 10, 1975; )     

Inhibition of growth and photosynthesis of freshwater phytoplankton by ultraviolet A (UVA) radiation and subsequent recovery from stress

The effect of ultraviolet A (UVA) on growth and photosyntheticrate was studied in diatoms (Melosira spp.) of the phytoplanktonof a eutrophic lake and a cultured green alga Chloretla ellipsoidea.The cells were incubated under photosynthetically active radiation(PAR) (–UVA) or PAR + UVA conditions (+UVA). Growth ofC.ellipsoidea was retarded under +UVA, as shown by an increasein the lag period, but the rate of exponential growth was almostthe same in + and –UVA conditions. The photosyntheticrate was depressed markedly by UVA in Chlorella cells grownunder –UVA. In contrast, cells grown in +UVA showed onlyslight inhibition by UVA and after exposure to UVA for 6 daysthere was no inhibition. During the growth experiment, the cellularchlorophyll a content was higher in +UVA than +UVA grown cells.A similar effect was observed in diatoms from the eutrophicLake Suwa. In vivo fluorescence with (F_a) and without 3-(3,4-dichloropheny)-l,l-dimethylurea (DCMU) (F_b) and the photosynthetic rate were measured forC.ellipsoidea and the diatoms for 5 h under + and –UVAconditions. Soon after C.ellipsoidea had been subjected to +UVA,F_b and F_a / F_b decreased quickly and reached minima after 40min and 1 h, respectively. The suppressed in vivo fluorescenceresumed and full recovery was achieved after 4 h. This suggeststhat reactivation of the photosystem is acquired under prolongedexposure to UVA. A similar shift of F_a + F_b, but no change inFb, was found in diatoms by exposure to UVA. Changes in photosyntheticoxygen evolution by C.ellipsoidea under +UVA were similar tochanges in F_a + F_b. Degradation of chlorophyll a extracted inmethanol was enhanced by UVA. The rate of degradation by UVAwas independent of temperature from 15 to 34°C, suggestinga photochemical reaction. The results indicate that C.ellipsoideaand Melosira spp. acclimatize to prolonged UVA exposure by reactivationof the photosystem and enhanced cellular chlorophyll a synthesis.The ecological importance of these results to phytoplanktonproductivity in natural aquatic environments is discussed.     

Isolation and Purification of a Ubiquinone-Cytochrome b-c1 Complex from a Photosynthetic Bacterium, Rhodopseudomonas sphaeroides

A ubiquinone-cytochrome b-c₁ complex was removed from chromatophoremembranes of a Rhodopseudomonas sphaeroides green mutant bydeoxycholate-cholate treatment of the chromatophores. The complexwas purified by ammonium sulfate fractionation and gel filtration. The molecular weight of the purified complex was 240,000 (240kD) and it was composed of seven subunits with molecular weightsof 47 kD, 42 kD, 38 kD, 32 kD, 30 kD, 24 kD and 16 kD. The complexcontained 1.54 and 3.42 nmol of cytochrome c₁ and two differentcytochrome b species per mg protein, respectively. It also contained7.07 nmol of ubiquinone, 6.37 nmol of non-heme iron and about3 nmol of carotenoids per mg protein. No flavins were detected.Heme staining indicated that the 32 kD-and 24 kD-subunits werecytochromes. The midpoint potential of cytochrome c₁ was 245 mV, and thevalues for the cytochromes b were 60 mV and –75 mV atpH 7.2. The peak of the -band of the reduced-minus-oxidizeddifference spectrum of cytochrome c₁ was located at 552.5 nm,arid peaks of the b-type cytochromes with higher and lower midpointpotentials were located at 562 nm and 563 nm. The chemical and the subunit compositions of the purified complexreported here were similar to those obtained for the inner membranesof mitochondria of various organisms. (Received April 5, 1982; Accepted June 14, 1982)     

Temperature-dependent development in marine copepods: comments on choices of models

Guerrero et al (1994) promote Tauti's equation, rate = a exp(b temp), as simple to fit by log conversion (which may be formallyinappropriate), empirically adequate, and having ‘appropriatebiological characteristics’. No function is justifiablefrom reductionist theories, but Belehrádek's, rate =a (temp – T₀)^b, with b fixed for the taxon of interest,fits equally well, and singularly distinguishes differencesattributable to temperature adaptation (T₀, often misunderstoodas ‘biological zero’), and to size or other species-dependentproperties (a).     

Yield-density Relationships: the Influence of Resource Availability on Growth and Self-thinning in Populations of Vulpia fasciculata

Monocultures of Vulpia fasciculata were grown over a wide rangeof densities to investigate the influence of crowding and nutrientsupply on growth and self-thinning. For a given time and densityseries the relationship between mean yield per plant (w) andthe density of survivors (N) could be described by the equation w= w_m (1+aN)^–b. where w_m is the yield of an isolated plant, a is the area requiredto achieve a yield of w_m and b describes the effectiveness withwhich resources are taken up from the area. All three parametersincreased with time. Adding nutrients changed not only the rate at which the effectsof crowding occurred but also the intensity of crowding since w_m = C(a^b)^D. where C and D are constants. The addition of nutrients resultedin an increase in the value of C. Such an increase means thata larger weight can be supported by a given area because theresources within that area are greater. During the early phases of growth, populations of V. fasciculataconformed to the –3/2 power law, w = cN^–3/2, butonly at very high densities with a plentiful supply of nutrients.However, once the maximum standing crop had been reached thetrajectory of the thinning line switched to a slope of justless than –1 when weight was ploted against density onlogarithmic scales. The intercept of the –3/2 thinningline was considerably higher (log c = 5.74) than those for mosttrees and forbs but was similar to those of a number of othergrasses. Vulpia fasciculata, dune fescue, yield-density models, self-thinning, density-dependence, nutrient supply     

Cytochromes in the Cultured Mycobiont of a Lichen, Cladonia vulcani Sav

Cytochromes in a cultured cells of the mycobiont of Cladoniavulcani Sav. were studied, b-and c-type cytochromes and aa₃-typecytochrome c oxidase were found in the membrane fraction, whileb- and c-type cytochromes were found in the soluble fraction.Soluble cytochrome c-549.5 was purified, and some of its molecularproperties were determined. (Received June 27, 1994; Accepted October 3, 1994)     

Energetic constraints and foraging efficiency

Previous research considers foraging options that differ interms of their gross rate of gain b and rate of energy expenditurec. This research argues that maximizing efficiency b/c willmaximize net energetic gain when there is an upper limit onthe amount of energy that can be assimilated. This analysisdoes not include the expenditure during the time for which theanimal is unable to forage because of this constraint. Whenthis expenditure is included, maximizing efficiency is no longeroptimal. Instead the best feeding option is the one with thehighest value of b/(c – c₁), where c, is the metabolicrate when the animal is not foraging.     

The Estimation of the Quantity of Isocitrate Lyase Protein in Acetate-Adapted Cells of Chlorella pyrenoidosa

The quantity of isocitrate lyase protein was estimated, as apercentage of cell dry weight, by three different electrophoreticmethods: (a) direct collection and determination of proteinsafter electrophoresis; (b) separation and estimation of ₃₅S-labelledproteins; (c) estimation from the density of stained bands onacrylamide gels. The possibility that protein-protein interactionduring electrophoresis might interfere with the results wasconsidered and discounted. The average result from the threemethods is that, in acetate-adapted cells of Chlorella pyrenoidosa,isocitrate lyase protein constitutes about 7.0 per cent of totalsoluble proteins (100,000 g supernatant), that is 1.0 per centof cell dry weight. The estimate agrees well with one basedon the increase in specific activity of the enzyme during purification.     

Purification and properties of cytochrome c and two peroxidases from spinach leaves

1. A simultaneous purification procedure of cytochrome c, peroxidases,ferredoxin, ferredoxin-NADP reductase and sulfite reductasefrom spinach leaves is described. Cytochrome c, ferredoxin andferredoxin-NADP reductase were prepared in crystalline states.The two peroxidases were obtained in homogeneous states as evidencedby their electrophoretic patterns on acrylamide gel and sedimentationanalysis. 2. Crystalline cytochrome c showed a molecular weight of 13,800and an E₀' of 270 mv at pH 7.0. In addition to these properties,its spectral pattern also indicated that this cytochrome c wasderived from mitochondria. 3. Two peroxidases were isolated in high spin forms after treatmentwith HgCl₂. They had a-peaks at 556 mµ in their reducedforms. Although both peroxidases showed small differences inchromatographic behavior on a carboxymethyl cellulose column,' they had similar spectral properties, dissociation constantsof peroxidase-cyanide complex and rate constants for peroxidasereactions. (Received December 24, 1970; )     

Cytochromes of Mitochondria from Rice Seedlings Germinated under Water and Their Changes during Air Adaptation

Rice seeds were germinated for up to 5 days under water (submerged)and some for another day in air (air-adapted). Control seedswere germinated for 6 days throughout in air. Low-temperaturedifference spectra of shoot mitochondria were compared amongthese three types of seedlings. All cytochromes found in theaerobic seedlings were present in the submerged seedlings. However,there were some differences in the cytochromes b₅₅₃ and c ofthese two types of seedlings. The cytochrome aa₃ peak heightand cytochrome oxidase activity per mitochondrial protein increased1.6- and 2.8-fold, respectively, during air adaptation. Slightlyhigher concentrations of the b-type cytochromes than found inair-adapted mitochondria were already present in submerged mitochondria.The computed difference between the dithionite-reduced differencespectra of mitochondria from submerged seedlings before andafter air adaptation, showed that cytochromes aa₃ and c hadincreased more than cytochrome b₅₅₇ during air adaptation. (Received November 16, 1987; Accepted March 16, 1988)     

COMPONENTS OF THE ELECTRON-TRANSFERRING SYSTEM IN ACETOBACTER SUBOXYDANS AND RECONSTRUCTION OF THE LACTATE OXIDATION SYSTEM

1. Cytochromes a₁⁵⁹⁰, b⁵⁶⁰, c₁⁵⁵⁴ and c₁⁵⁵² were isolated andpurifiedfrom a strain of Acetobacter suboxydans. The proceduresusedwere described in detail.
2. The main cytochrome band at550-560 mµ in intact cellssplitted at liquid air temperatureinto two bands, 551 mµ(strong) and 559 mµ (weak).
3. Optical and physiological properties of the four cytochromeswere investigated. Lactic dehydrogenase activity was found tobe associated with cytochrome c₁⁵⁵⁴. The two c₁-type cytochromes,especially cytochrome c₁⁵⁵⁴, persisted in their reduced formafter the purification through many steps.
4. By some combinationsof isolated components reconstruction ofthe oxygen uptake systemcould be realized.
5. The oxygen-consuming activity of purifiedoxidase preparationswas accelerated by a-tocopherol but notby Emasoll 4130 andTween 80.
6. Some discussions were made onthe nature of terminal oxidase,the role of cytochrome c₁⁵⁵²in the electron-transport system,and persistence of reducedstate of c₁-type cytochromes.
7. A possible scheme of the electron-transferringsystem of Acetobactersuboxydans was presented.

(Received May 16, 1960; )     

Preliminary Characterization of Glutathione S-Transferases That Accumulate in Callus Cells of Pumpkin (Cucurbita maxima Duch.)

Glutathione S-transferases (GSTs; EC 2.5.1.18 [EC] ) in sarcocarptissue of pumpkin (Cucurbita maxima Duch.) fruit and in callusinduced from the tissue were examined. The specific activityof GST in the callus was 6.9-fold higher than that in the tissue.The specific activity in the callus remained constant duringcultivation. Column chromatography on DEAE-cellulose, hydroxylapatite,and S-hexylglutathione-agarose was used to fractionate solubleproteins that were precipitated by ammonium sulfate at 30% to70% saturation from homogenates of the sarcocarp tissue of pumpkinfruit and the callus and GST activity was monitored. Two andseven isozymes of GST were identified in the tissue and in thecallus, respectively. Furthermore, column chromatography onSephadex G-200 and SDS-polyacrylamide gel electrophoresis, indicatedthat these GST isozymes were homo- and heterodimers of subunitsof M_r 22,000 (Puga), and 23,000 (Pugb), 24,000 (Pugc) or 24,500(Pugd). Puga and Pugb were predominant in the sarcocarp tissueand in the callus, respectively. Puga, Pugb, Pugc and Pugd hadacidic pI values of 5.45, 5.00, 5.35 and 5.75, respectively.Rabbit antiserum against Pugb did not cross-react with the threeother subunits of GST during immunoblotting. (Received July 15, 1993; Accepted December 14, 1993)     

Chromatic Regulation of Cytochrome Composition and Electron Transfer from Cytochrome b6-f Complex to Photosystem I in Anacystis nidulans (Tx 20)

Cytochrome composition of the cyanobacterial photosyntheticsystem was studied with Anacystis nidulans (Tx 20) in relationto the chromatic regulation of photosystem composition. Comparisonof cytochrome compositions in cells with a high PS I/II ratio(3.0, grown under weak orange light) and with a low ratio (1.6,grown under weak red light) indicated that cytochrome compositionwas also changed in the chromatic regulation of photosystemcomposition. Two types of cytochrome change were observed: 1)contents of cytochromes C₅₅₃ and c₅₄₈ were changed in parallelwith the changes in PS I content, and 2) cytochrome b₅₅₃ andcytochrome b₆-f complex were held at a constant molar ratioto PS II. The molar ratio, PS II : cytochrome b₅₅₉ : cytochromeb₆-f complex : cytochrome c₅₅₃ : PS I : cytochrome C₅₄₈, inthe red-grown cells was 1 : 2.5 : 1.3 : 0.17 : 1.6 : 0.67, andthe ratio in the orange-grown cells, 1:2.4:0.9:0.32:3.0:1.2.In both types of cells, almost all cytochrome f in the cytochromeb₆-f complex was rapidly oxidized after multiple flash activation,indicating that all cytochrome b₆-f complexes in cells of bothtypes are functionally connected to PS I, even when the molarratio to PS I is largely changed. The content of cytochromeC₅₅₃ was at most 0.14 of PS I, suggesting that the cytochrometurns over several times per one turnover of PS I. ¹Present address: Department of Biology, Faculty of Science,Tokyo Metropolitan University, Fukazawa 2-1-1, Setagaya, Tokyo158, Japan. (Received January 20, 1986; Accepted March 17, 1986)     

Photoconversion of a Water-Soluble Chlorophyll Protein from Chenopodium Album: Resonance Raman and Fourier Transform Infrared Study of Protein and Pigment Structures

A water-soluble Chl a/b-protein complex, CP668, from Chenopodiumalbum converts to another form of protein complex, CP743, uponlight illumination. Structural changes of pigments and proteinsupon photoconversion were studied using resonance Raman (RR)and Fourier transform infrared (FTIR) spectroscopies. RR spectraof CP668 and CP743 and a light-induced FTIR difference spectrumshowed that the macrocyle C=C bands of Chl a in CP668 considerablychanged upon conversion to the pigment (not chemically identifiedyet) in CP743. The C=C band pattern of the RR spectrum of CP743was similar to that of bacteriochlorophyll a, suggesting thatthe conjugated system of the CP743 pigment resembles a bacteriochlorinring. Judging from the C=O frequencies, the 13¹-keto C=O groupsof Chl a and b in CP668 are free from hydrogen bonding, whereasthe 13²-ester C=O groups of both Chl a and b and the 7-formylC=O of Chl b in CP668 are hydrogen bonded. Upon conversion toCP743, interactions of the 13¹-keto and 13²-ester C=O groupswere basically unaffected, demonstrating no drastic changesaround these C=O groups. FTIR spectra in the amide I' regionof CP668 and CP743 in D₂O buffer showed a peak at 1,633 cm^–1,which represents a major component of ß-sheet conformation.Second-derivative spectra of the amide I' bands as well as alight-induced FTIR difference spectrum suggested that drasticchange in the protein conformation does not occur upon photoconversion. (Received November 1, 1998; Accepted December 24, 1998)     

Contents of Cytochromes, Quinones and Reaction Centers of Photosystems I and II in a Cyanobacterium Synechococcus sp.

The contents of photosystem I and photosystem II reaction centers,cytochrome c-553, cytochrome c-550, cytochrome f, cytochromeb-559, cytochrome b-563, plastoquinone and vitamin K₁ in thecyanobacterium Synechococcus sp. were determined. About threephotosystem I reaction centers were present for each photosystemII reaction center. The amounts of cytochromes functioning betweenthe two photosystems were approximately half those of the photosystemI reaction center. Plastocyanin was not detected, while plastoquinoneand vitamin K₁ were present in excess of other electron carriersand reaction centers. The results indicate the importance ofplastoquinone and cytochrome c-553 for cooperation of the tworeaction centers through electron transport. ¹Present address: Toray Basic Research Laboratory, 1111 Tebiro,Kamakura, Kanagawa 248, Japan. (Received June 17, 1982; Accepted January 17, 1983)     

Preparation of Chlorophyll a, Chlorophyll b and Bacteriochlorophyll a by Column Chromatography with DEAE-Sepharose CL-6B and Sepharose CL-6B

Chlorophylls extracted from spinach leaves were made free fromcarotenoids, pheophytins, chlorophyllides and plastoquinonesby column chromatography with DEAE-Sepharose CL-6B. Chlorophylla and b were separated by column chromatography with SepharoseCL-6B. By a combined use of DEAE-Sepharose CL-6B and SepharoseCL-6B, pure chlorophyll a and b were prepared from the leavesin a short time. Bacteriochlorophyll a_p extracted from a photosyntheticbacterium Chromatium vinosum was made free from carotenoids,bacteriopheophytin, ubiquinone and lipids by column chromatographywith Sepharose CL-6B. (Received April 19, 1983; Accepted June 16, 1983)