Karyotypic differences of black rats,Rattus rattus,collected in various localities of East and Southeast Asia and Oceania

Karyotypes of several subspecies of black rats, Rattus rattus, collected in different localities of Asia and Oceania were examined with special emphasis on the relationship between the chromosome polymorphism and differentiation of the subspecies. Subspecies of black rats (R. rattus) collected were as follows; tanezumi from Japan; flavipectus and sladeni from Hong Kong; diardii, jalorensis from Kuala Lumpur, Malaysia; argentiventer from Kuala Lumpur, and Java and Celebes, Indonesia; mindanensis from Luzon and Mindanao, Philippines; and rattus from Australia, New Zealand, and New Guinea. Subspecies in Formosa, Korea and Thailand were not determined. All black rats collected in the above Asian districts had 42 diploid chromosomes, while those in Oceania had 38. The rats collected in Japan (tanezumi), Korea, Formosa, Thailand and Malaysia (diardii) had A/A No. 1 pair or polymorphic No. 1 (A/A, A/S and S/S) pairs, while those collected in Java and Celebes (argentiventer), Luzon and Mindanao (mindanensis) showed a higher frequency of S/S No. 1 pair. From the higher occurrence of No. 1 A/A pair of black rats in the Asian continent where the black rats originated, it is suggested that the original type of No. 1 chromosome pair of the black rats is A/A, and a pericentric inversion occurred in the acrocentric No. 1 chromosome and thus rats with subtelocentric No. 1 pair formed.—Black rats with 38 chromosomes were observed in Australia, New Guinea and New Zealand. These karyotypes seem to have developed by Robertsonian fusion of 4 acrocentric pairs (No. 4 and 7, and No. 11 and 12) in black rats of the Asian type. A relationship between body size and chromosome constitution was observed in subspecies of the black rats.Contribution No. 831 from the National Institute of Genetics, Japan. Supported by a grant-in-aid from the Ministry of Education of Japan (Scientific Expedition in 1968, No. 8801 in 1969, and No. 9001 in 1970).     

Multiple Cryptosporidium genotypes detected in wild black rats (Rattus rattus) from northern Australia

As part of a broader investigation into the potential role of black rats (Rattus rattus) as disease vectors into native small mammal populations of northern Australia, blood and faecal samples from wild black rats were screened by molecular methods, for piroplasms (Babesia and Theileria), trypanosomes and the enteric parasite Cryptosporidium. While piroplasms and trypanosomes were not detected in the blood of these animals, the overall prevalence of Cryptosporidium 18S rDNA in faecal samples was 8.2% (7/85). Co-occurrence of multiple genotypes was observed in 57.1% of the infected individuals (4/7); cloning and re-sequencing resulted in 14 sequences which broadly grouped with Cryptosporidium sp. rat-genotypes II and III. A novel rat-derived Cryptosporidium sp. genotype at the actin locus was also obtained from five animals. The relatively low infection rate detected, and the epidemiological data on cryptosporidiosis, do not conclusively support a current threat to native Australian mammals from black rats carrying Cryptosporidium. However, this observation is based on sampling limited isolates, in limited regions. Further studies, also including sampling of native mammals, are required on larger sample sizes and from wider geographic areas, to determine the significance of these findings, including the public health importance of Cryptosporidium spp. from rodents.     

Frugivory by introduced black rats (Rattus rattus) promotes dispersal of invasive plant seeds

Oceanic islands have been colonized by numerous non-native and invasive plants and animals. An understanding of the degree to which introduced rats (Rattus spp.) may be spreading or destroying seeds of invasive plants can improve our knowledge of plant-animal interactions, and assist efforts to control invasive species. Feeding trials in which fruits and seeds were offered to wild-caught rats were used to assess the effects of the most common rat, the black rat (R. rattus), on 25 of the most problematic invasive plant species in the Hawaiian Islands. Rats ate pericarps (fruit tissues) and seeds of most species, and the impacts on these plants ranged from potential dispersal of small-seeded (≤1.5 mm length) species via gut passage (e.g., Clidemia hirta, Buddleia asiatica, Ficus microcarpa, Miconia calvescens, Rubus rosifolius) to predation where <15% of the seeds survived (e.g., Bischofia javanica, Casuarina equisetifolia, Prosopis pallida, Setaria palmifolia). Rats consumed proportionally more seed mass of the smaller fruits and seeds than the larger ones, but fruit and seed size did not predict seed survival following rat interactions. Although invasive rat control efforts focus on native species protection, non-native plant species, especially those with small seeds that may pass internally through rats, also deserve rat control in order to help limit the spread of such seeds. Black rats may be facilitating the spread of many of the most problematic invasive plants through frugivory and seed dispersal in Hawaii and in other ecosystems where rats and plants have been introduced.     

Electrophoretic evidence for the origins of tetraploids and hybrids ofSphenomeris chinensis sensu lato (Lindsaeaceae) in Japan

Hypotheses for the origins of tetraploids and hybrids ofSphenomeris chinensis sensu lato in Japan were tested using electrophoretic analysis of isozymes. Comparison of banding patterns supported the hypothesis that plants having abortive spores had resulted following hybridization between diploidS. chinensis var.chinensis andS. biflora and between diploid var.chinensis andS. gracilis. Results from isozymic analyses also revealed thatS. intermedia probably originated through allotetraploid speciation following hybridization between var.chinensis andS. biflora. There were two electrophoretic variants among tetraploids ofS. chinensis. One variant, restricted to the southern Ryukyu Islands, is probably an allotetraploid of hybrid origin between diploidS. chinensis andS. gracilis. It has been described as a new species,S. yaeyamensis Lin, Kato & K. Iwatsuki. The other variant, morphologically corresponding to var.chinensis, is distributed at least throughout southern Japan and also in northern Thailand. Its origin is uncertain, but one of the parents is probably diploidS. chinensis. Sphenomeris intermedia andS. yaeyamensis occur inland, whereas the parentalS. biflora andS. gracilis are halophilous and rheophllous, respectively.     

Genetic characterization of black rat (Rattus rattus) of the Canary Islands: origin and colonization

In the Canary Islands two invasive rat species, Rattus rattus and Rattus norvegicus are present, but little is known about the origin and colonization. To this end, a molecular study was performed on R. rattus from the Archipelago and from the nearest continents. Partial cytochrome b gene sequencing offered very low levels of haplotype and nucleotide diversities, with only seven haplotypes identified. All of them belong to the European Lineage I, specifically to the “ship rat” cluster. The haplotype network showed a star-like topology. Haplotype distribution showed a genetic subdivision between eastern and central/western islands, suggesting a double colonization event. This hypothesis is congruent with historical human colonization and it is similar to that proposed for the rodent parasite Hymenolepis diminuta. In addition, a possible role of the Canary Islands as a faunal link with the European and American continents is discussed.     

Invasion genetics of the introduced black rat (Rattus rattus) in Senegal,West Africa

An understanding of the evolutionary history and dynamics of invasive species is required for the construction of predictive models of future spread and the design of biological management measures. The black rat (Rattus rattus) is a major vertebrate invader with a worldwide distribution. Despite the severe ecological, economic and health impacts of this species, its evolutionary history has been little studied. We carried out extensive specimen sampling in Senegal, West Africa, and used microsatellite markers to describe the pattern and processes of invasion in this large continental area. The genetic data obtained were combined with historical knowledge concerning the presence of this species in Senegal. Data were analysed by a combination of Bayesian clustering and approximate Bayesian computation methods. The invasion pathways closely paralleled the history of human trade routes in Senegal. In several places, we detected the occurrence of multiple introductions from genetically different sources. Long‐distance migration between towns and villages was also observed. Our findings suggest that genetic bottlenecks and admixture have played a major role in shaping the genetics of invasive black rats. These two processes may generate genetic novelty and favour rapid evolution along the invasion pathways.     

Cotton rats (Sigmodon hispidus) and black rats (Rattus rattus) as possible reservoirs of Leishmania spp. in Lara State,Venezuela

A total of 519 wild animals belonging to eleven species were collected during a two year study in a cutaneous leishmaniasis endemic area in Venezuela (La Matica, Lara State). The animals were captured in home-made Tomahawk-like traps baited with maize, bananas or other available local fruits, and parasites were isolated from 27 specimens. Two different species were found naturally infected with flagellates, i.e., cotton rats (Sigmodon hispidus) and black rats (Rattus rattus). Characterization of the parasites using PCR, kDNA restriction pattern and hybridization with species-specific probes revealed the presence of Leishmania (L.) mexicana in three of the black rats and Leishmania (V.) braziliensis in two others. The latter species was also identified in the single positive specimen of S. hispidus. The results suggested both species of animals as possible reservoirs of Leishmania sp.     

Prevalence and genetic properties of Salmonella enterica serovar typhimurium definitive phage type 104 isolated from Rattus norvegicus and Rattus rattus house rats in Yokohama City, Japan

Salmonella enterica serovar Typhimurium was isolated from the intestinal contents of Rattus rattus and Rattus norvegicus house rats captured at two buildings, designated buildings J and YS, in Yokohama City, Japan. From October 1997 to September 1998, 52 of 339 (15.3%) house rats were found to carry Salmonella serovar Typhimurium definitive phage type 104 (DT104). In building J, 26 of 161 (16.1%) house rats carried DT104 over the 1-year study period, compared to 26 of 178 (14.6%) rats in building YS. The isolation rates of DT104 from R. rattus and R. norvegicus were similar in the two buildings. Most DT104 strains from building J (24 of 26) showed resistance to ampicillin, chloramphenicol, streptomycin, sulfisoxazole, and tetracycline and contained both the 1.0- and 1.2-kbp integrons, carrying genes pse1, pasppflo-like, aadA2, sulI, and tet(G). All DT104 strains from building YS were resistant to ampicillin and sulfisoxazole, and had the 1.2-kbp integron carrying pse1 and sulI. Cluster analysis of pulsed-field gel electrophoresis patterns of BlnI-digested DT104 DNAs showed that 22 of 26 DT104 strains from building J and 24 of 26 strains from building YS could be grouped into separate clusters each specific for the building origin. These results indicated that DT104 strains were prevalent in house rat colonies in each building and suggest that house rats may play an important role in the epidemiology of DT104.     

Experimental infection of dusky-footed wood rats (Neotoma fuscipes) with Ehrlichia phagocytophila sensu lato

Dusky-footed wood rats, Neotoma fuscipes, have been implicated in the natural maintenance of Ehrlichia phagocytophila sensu lato, the agent of human granulocytic ehrlichiosis (HGE), in northern California based on high seroprevalence and amplification of E. phagocytophila s.l. DNA from wood rat blood. In order to further assess granulocytic ehrlichiosis in wood rats, we examined wild-caught wood rats for infection and then performed experimental intra-peritoneal infections with E. phagocytophila s.l. in horse or wood rat blood, and tested animals for 120 days by polymerase chain reaction (PCR) and serology. Of 15 wood rats collected from northern California, three were antibody and PCR-positive for E. phagocytophila s.l. at the time of capture. The naturally infected wood rats remained PCR-positive for a mean of 52 days (+/- 7 SD). Experimental i.p. passage of E. phagocytophila s.l. in wood rat blood was successful in three of four wood rats and the mean duration of PCR-positivity was 75 days (+/- 21.2 SD). Experimental infection with E. phagocytophila s.l. in horse blood succeeded in all four of the recipients and the mean duration of PCR-positivity of 81 days (+/- 17.5 SD). No infected individual appeared to be ill based on feeding behavior, activity, and hydration status. These data confirm that wood rats are susceptible to E. phagocytophila s.l., may develop prolonged infection without clinical ehrlichiosis, and may play a role in maintaining E. phagocytophila s.l. in nature.     

Denning behaviour of ship rats (Rattus rattus) on Taukihepa,a seabird breeding island

Abstract

Den sites of 14 ship rats (Rattus rattus) were located daily during the rat breeding season on Taukihepa (Big South Cape), a seabird island southwest of Rakiura (Stewart Island). In contrast to other New Zealand studies, no arboreal dens were found. Den sites on Taukihepa were in ferns, under logs, in woodpiles, or underground in sooty shearwater (Puffinusgriseus) breeding burrows. The number of times known den sites used was positively related to the amount of leaf litter and woodpiles near the den sites. Overall, 24% of radio‐tagged rats were sharing den sites on any given day. While there was considerable individual variation in the number of times den sites were used, female rats tended to reuse den sites more than males. Many rats were found in dens alone, but frequently males and females shared. Occasionally two females and one male denned together, as did two females, whereas males never denned with another male.     

Distribution of genetic diversity within and between Western Mediterranean island populations of the black rat Rattus rattus (L. 1758)

Genetic diversity was estimated by allozyme analysis at 26 loci in black rat populations (Rattus rattus) from 15 western Mediterranean islands (Hyéres, Corsica, Sardinia and related islets). Although overall variability levels were low (H = 0.025), the mean heterozygosity values for the islands were similar to those for three reference mainland populations. Within the islands, however, genetic diversity varied in relation to island size and geographic isolation. In particular, most small insular populations were significantly more variable than those on both large and isolated islands. The generic relationships between island populations were established by F_ST analyses indicating possible geographic origins and patterns of colonization. The maintenance of unexpectedly high levels of variability in the small island populations is discussed in relation to changes in the demographic and social structure observed in these populations. These island populations of black rat illustrate how genetic diversity may be efficiently maintained in a series of interconnected spatially fragmented populations.     

Introduced black rats Rattus rattus on Ile de la Possession (Iles Crozet, Subantarctic): diet and trophic position in food webs

Rats introduced on islands can affect ecosystem structure and function by feeding on terrestrial plants and both marine and terrestrial animals. The diet and trophic position of Rattus rattus introduced on Ile de la Possession (Iles Crozet) was assessed from two sites, according to the presence or absence of a king penguin colony. We used three complementary assays: macroanalyses of the stomach, faecal microhistology, and stable isotope analyses of δ¹⁵N/δ¹³C in liver. Near the rookery, spermatophytes contributed on average 50% (confidential interval: 23–75) to the diet based on isotopes, mainly consisting in reproductive parts of Poa spp., Agrostis magellanica, and Cerastium fontanum identified in faeces. Terrestrial animal preys were represented by insects that contributed 25% (0–56) in isotopes, dominated in faeces by caterpillars of Pringleophaga spp. and adult weevils. Bird remains were found in faeces, forming 18% (6–30) of isotopes. Terrestrial earthworms contributed to 7% (0–21), with chaetae observed in faeces. On the other site, spermatophytes represented 62% (51–73) of assimilated food in rats’ livers, mainly formed by Poaceae and Acaena magellanica, insects by caterpillars [24% (10–39)], and terrestrial earthworms [13% (2–23)]. Our results suggest that rats, which were found at the top of terrestrial food chains, may have a direct role on a such simplified ecosystem, by preying on the most abundant and largest body-sized terrestrial invertebrates,—e.g. the keystone species Pringleophaga spp.—, and by feeding on both reproductive and vegetative parts of autochthonous and introduced plants. The discrepancies and usefulness of employing both isotopes and faecal analyses are discussed.     

Determination of the evolutionary relationships in Rattus sensu lato (Rodentia : Muridae) using L1 (LINE-1) amplification events

We determined ∼215 bp of DNA sequence from the 3′-untranslated region (UTR) of 240 cloned L1 (LINE-1) elements isolated from 22 species of Rattus sensu lato and Rattus sensu stricto murine rodents. The sequences were sorted into different L1 subfamilies, and oligonucleotides cognate to them were hybridized to genomic DNA of various taxa. From the distribution of the L1 subfamilies in the various species, we inferred the partial phylogeny of Rattus sensu lato. The four Maxomys species comprise a well-defined clade separate from a monophyletic cluster that contains the two Leopoldamys and four Niviventer species. The Niviventer/Leopoldamys clade, in turn, shares a node with the clade that contains Berylmys, Sundamys, Bandicota, and Rattus sensu stricto. The evolutionary relationships that we deduced agree with and significantly extend the phylogeny of Rattus sensu lato established by other molecular criteria. Furthermore, the L1 amplification events scored here produced a unique phylogenetic tree, that is, in no case did a character (a given L1 amplification event) appear on more than one branch. The lack of homoplasy found in this study supports the robustness of L1 amplification events as phylogenetic markers for the study of mammalian evolution. Received: 8 November 1996 / Accepted: 11 April 1997     

Use of habitat by the black rat (Rattus rattus) at North Head,New South Wales: an observational and experimental study

This study investigated the habitats used by an introduced species of rodent, the black rat Rattus rattus (Linnaeus), at North Head in New South Wales, Australia. At a coarse scale, combined live‐trapping and radio‐tracking indicated that animals used forest proportionately more than open, heath or scrub macrohabitats that were available. To identify the components contributing to this pattern, microhabitat use was assessed by scoring vegetative and structural features around trap stations, and by using spool‐and‐line tracking. The results indicated that rats preferred microhabitats providing a deep cover of leaf litter and dense understorey with numerous vertical stems. As statistical analysis did not distinguish which of these components was more important in determining habitat use, we designed an experiment to test the importance of a single component: leaf litter. Cover of litter was enhanced experimentally at 75 trap stations and reduced at 75 others, and the response of rats monitored by live‐trapping on two occasions. Although no clear response was found in the first run of the experiment, due to low numbers, rats strongly selected trap stations with enhanced leaf litter in the second run. These results indicate that litter cover affects use of habitat by the black rat. Access to food resources and avoidance of predators may contribute to the observed local patterns of abundance.     

DNA barcoding reveals twelve lineages with properties of phylogenetic and biological species within Melitaea didyma sensu lato (Lepidoptera,Nymphalidae)

The complex of butterfly taxa close to Melitaea didyma includes the traditionally recognized species Melitaea didyma, Melitaea didymoides and Melitaea sutschana, the taxa that were recognized as species only relatively recently (Melitaea latonigena, Melitaea interrupta, Melitaea chitralensis and Melitaea mixta) as well as numerous described subspecies and forms with unclear taxonomic status. Here analysis of mitochondrial DNA barcodes is used to demonstrate that this complex is monophyletic group consisting of at least 12 major haplogroups strongly differentiated with respect to the gene COI. Six of these haplogroups are shown to correspond to six of the above-mentioned species (Melitaea didymoides, Melitaea sutschana, Melitaea latonigena, Melitaea interrupta, Melitaea chitralensis and Melitaea mixta). It is hypothesized that each of the remaining six haplogroups also represents a distinct species (Melitaea mauretanica, Melitaea occidentalis, Melitaea didyma, Melitaea neera, Melitaea liliputana and Melitaea turkestanica), since merging these haplogroups would result in a polyphyletic assemblage and the genetic distances between them are comparable with those found between the other six previously recognized species.     

A new combination of Bryum gossypinum with Synthetodontium (Bryophyta, Bryaceae sensu lato)

Synthetodontium gossypinum (X.J.Li & M.Zang) J.C.Zhao & Y.L.Niu,comb.nov. 绵毛合齿藓(S5-3.Fig.1,S5-4.Fig.2) Basionym:Bryum gossypinum X.J.Li & M.Zang in C.Gao & K.C.Zhang,Acta Phytotax.Sin.17 (4):116,t.1:34-39.1979. Type:China.Xizang:Gegyai County,in alpine meadow on the south slope of Alengshan Mountains,alt.5550 m,1976-08-16,Jin-Ting Wang 8 (holotype,IFP! (17285);isotypes,PE!,KUN!).     

Tooth wear patterns in black rats (Rattus rattus) of Madagascar differ more in relation to human impact than to differences in natural habitats

Dietary characteristics and environmental variables are important selective factors directing ecological diversification in rodents. On Madagascar, the introductions and spread of the commensal black rat (Rattus rattus) can be seen as example cases to study dietary niche occupation and dietary adaptation in an insular environment. We investigate how tooth wear as a measure of dietary adaptation of black rats differs between four distinct habitats (village, manioc fields, spiny forest, and rainforest) with different dietary resources. We use the 3D surface texture analysis (3DST, using 30 parameters according to ISO 25178) as a measure of dietary abrasiveness. 3DST is applied on the occlusal surface of the upper first molar of 37 black rat specimens. The rainforest sample displays less rough and less voluminous surface textures compared to the village samples as indicated by smaller values for height parameters (Sa, Sp, Sq), inverse areal material ratio (Smc), and volume parameters (Vm, Vmc, Vmp, Vv, and Vvc). We therefore rank sampling areas from highest to lowest abrasiveness (village>manioc fields/spiny forest>rainforest). The rats from villages and rainforest differ to such an extent that one could have interpreted them to belong to different species. This indicates a high degree of variability in terms of ingesta abrasiveness. Furthermore, the pronounced difference between rats from human habitations compared to rats from associated fields or natural vegetation is interpreted to clearly indicate shifts in dietary niche occupation in relation to human impact.