Blocking adhesion of cancer cells to endothelial cell types by S. agalactiae type-specific polysaccharides

By using immortalized and normal endothelial cells, we were able to detect inhibitory effects of type specific polysaccharides from Streptococcus agalactiae on adhesion of cancer cells to endothelial cells, which is an essential step of cancer metastasis. The inhibition was probably due to specific structures of the bacterial polysaccharides, since the structures of the saccharides are very similar to those of cancer specific sialyl Lewis carbohydrates (sialyl Le^a and Le^x) which bind to ELAM-1 of endothelial cells. This result indicated that the bacterial polysaccharides from S. agalactiae could be very useful and hopeful as cancer metastasis inhibitors.Abbreviations HUVECs human umbilical cord vein endothelial cells - ELAM-1 endothelial leukocyte adhesion molecule-1     

La méta-analyse: évaluation qualitative et quantitative de l’information scientifique en médecine

Meta-analysis is a method which uses statistical techniques for combining results from several different studies, in order to get an estimation of the global effect for a procedure on a global outcome. This technique leads to an increase in the power of statistical testing. It also gives an information which cannot be drawn from one individual study. Two approaches are possible, and often combined. The qualitative approach consists of weighing various studies according to their methodological quality. The quantitative approach consists of pooling the results of different studies. The different steps of the meta-analysis are described. Meta-analysis shows many advantages, such as the estimation of the effect size or the increase in generalizability. It also helps physicians and health policy makers in answering to a specific question.     

A framework for modelling and analysing conspecific brood parasitism

Recently several papers that model parasitic egg-laying by birds in the nests of others of their own species have been published. Whilst these papers are concerned with answering different questions, they approach the problem in a similar way and have a lot of common features. In this paper a framework is developed which unifies these models, in the sense that they all become special cases of a more general model. This is useful for two main reasons; firstly in order to aid clarity, in that the assumptions and conclusions of each of the models are easier to compare. Secondly it provides a base for further similar models to start from. The basic assumptions for this framework are outlined and a method for finding the ESSs of such models is introduced. Some mathematical results for the general, and more specific, models are considered and their implications discussed. In addition we explore the biological consequences of the results that we have obtained and suggest possible questions which could be investigated using models within or very closely related to our framework.M. Broom is also a member of the Centre for the Study of Evolution at the University of Sussex.     

The use of structural dynamic models to explain successes and failures of biomanipulation

A development of a structural dynamic model, i.e. a model with current change of the most important parameters according to a goal function, is presented with the aim to explain the structural changes observed in lakes, when the nutrient concentration is increased or decreased. This type of models may be important in lake management as it may be possible qualitatively to predict the success or failure of biomanipulation. The answer to the crucial question: àt which phosphorus level will the success of biomanipulation be most probable?' will probably require the development of model which takes into account site specific processes and properties, i.e., a more complicated model. As goal function is proposed the thermodynamic function, exergy, which is defined as the work content of the system (model) compared with the system at thermodynamic equilibrium. It is shown that the structural dynamic modelling approach has been able to explain the shift from large to small zooplankton species at a certain level of phosphorus concentration, accompanied by a shifts from a dominance of zooplankton, and predatory fish to a system dominated by planktivorous fish and phytoplankton. The shift in zooplankton species cannot be explained by application of catastrophe theoretical models, which have been used to explain the hysteresis reaction. The results show that the shift should be expected at approximately 0.12 mg P l-1 and that a typical hysteresis reaction occurs at this concentration in accordance with the expectations. These results are consistent with many observations but should be interpreted with great caution, as the model is simple and general and don't account for a number of processes which may influence the results significantly in specific lake studies. The structural dynamic approach has previously been used in ten case studies with good agreement with the observations, but more case studies are needed before a general recommendation of the use of this type of models can be given. The results from this study point toward to apply this type of models for lake management where biomanipulation is involved, although it should be recommended to improve the presented general model with introduction of site specific properties for a considered lake study.     

Noise-Driven Neocortical Interaction: A Simple Generation Mechanism for Complex Neuron Spiking

We discuss a generic scenario along which complex spiking behavior evolves in biologically realistic neural networks. Our nonlinear dynamics approach is based directly on rat neocortical in vitro recordings. Using this experimental data, we obtain a full overview on the possible spiking behaviors of pyramidal neurons that are engaged in binary interactions. Universality arguments imply that the observed spiking behaviors are largely independent from the specific properties of individual neurons; theoretical arguments and numerical experiments indicate that they should be observable in in vivo neocortical neuron networks.     

Functional localisation in the cerebral cortex and cerebellum: lessons from the past

One of the basic questions about the working of the brain is the extent to which its various functions are localised. In the nineteenth century great advances were made in the study of localisation. The control of speech, movement, and vision was identified with specific regions of the cerebral cortex. Although since the nineteenth century lesions of the cerebellum have been known to produce impaired movement, there has been rather little progress towards answering more detailed questions about the functions of the cerebellum and cerebellar localisation. The experts are still not agreed on what the cerebellum does or how and where it does it. Three examples are given of functions which probably are mediated by the cerebellum; adaptation of the vestibulo-ocular reflex, classical conditioning of the nictitating membrane response, and adaptation of saccadic eye movements. In all three cases the control of these functions has been localised to a specific region of the cerebellar cortex and/or nuclei. The success of localisation studies in the cerebral cortex can serve as a guide. Continued experimentation directed at the question of localisation should prove a fruitful approach to understanding more about the functions of the cerebellum.     

Statistical approach to combining the results of similar experiments, with application to the hematologic effects of extremely-low-frequency electric field exposures

A large proportion of scientific effort in investigating the possible biological effects of exposure to extremely-low-frequency (ELF) fields consists of laboratory studies on experimental animals. Most experiments in which hematologic properties are measured show no statistically significant effect due to exposure. However, some studies show significant effects which, in general, are not clearly reproducible. A difficult question must then be addressed: Are these relatively few indications of ELF effects statistical artifacts due to the increased risk of a type I error in multiple studies, or is there a real biological effect that is undetected in most studies due to the relatively small sample sizes commonly used? A statistical approach for examining the accumulated results of multiple experiments which results in a single test for treatment effect is presented. The technique requires very mild assumptions, and is valid for experiments that vary widely in specific characteristics such as exposure level, duration, and laboratory. The method is applied to the results of a collection of hematologic and serum chemistry experiments, and the combined results indicate the existence of experimental effects on some end points.     

Animal models of human genetic diseases: do they need to be faithful to be useful?

With the advances in molecular genetics, animal models of human diseases are becoming more numerous and more refined every year. Despite this, one must recognize that they generally do not faithfully and comprehensively mimic the homologous human disease. Faced with these imperfections, some geneticists believe that these models are of little value, while for others, on the contrary, they are important tools. We agree with this second statement, and in this review, we examine the reasons that may explain the observed differences and suggest means to circumvent or even exploit them. Our opinion is that animal models should be regarded more as tools capable of answering specific questions rather than mere replicas, at a smaller scale, of a given human disease. Far from disappointing they are probably called for a promising future.     

Effects‐initiated assessments are not risk assessments

True risk assessments address the probability of a future risk occurring given a certain set of circumstances. However, “effects‐initiated assessments”; or “retrospective assessments”; often are improperly included under the broad appellation of “risk assessment”; and are conducted when an apparently adverse effect is seen in some environmental component and the question of cause (i.e., etiology) is raised. Base line risk assessments at Superfund sites or for Natural Resource Damage Assessments are examples of effects‐initiated assessments. We argue here that this type of study is not a risk assessment, either by strict definition of terminology or by logical approach taken in answering the posed question (s), and should more properly be called “diagnostic ecology.”; Diagnostic ecology starts from the premise that ecological effects have occurred and exposure to a Stressor has taken place. The problem then is to pose all possible etiologies and utilize deductive logic to systematically eliminate each agent except for one as the actual cause. A risk assessment, on the other hand, employs inductive reasoning. That is, hypotheses are generated about the possible sources of a stressor and the possible outcome if exposure occurs. Both exercises require an understanding of the ecological relationships of the various components in the ecosystem, both need an understanding of die cause‐and‐effect relationships of agents, and both require a proper framing of the questions being asked. However, risk assessors should not try to fit all environmental impact assessments into a single framework, but rather should recognize that biomedical techniques are better suited for solving diagnostic riddles than are prospective risk assessment approaches.     

Synergy between pretreatment lignocellulose modifications and saccharification efficiency in two brown rot fungal systems

Brown rot wood-degrading fungi distinctly modify lignocellulose and completely hydrolyze polysaccharides (saccharification), typically without secreting an exo-acting glucanase and without removing lignin. Although each step of this two-step approach evolved within the same organism, it is unknown if the early lignocellulose modifications are made to specifically facilitate their own abbreviated enzyme system or if enhancements are more general. Because commercial pretreatments are typically approached as an isolated step, answering this question has immense implication on bioprocessing. We pretreated spruce and pine blocks with one of two brown rot fungi, Gloeophyllum trabeum or Fomitopsis pinicola. Wood harvested at weeks 1, 2, 4, and 8 showed a progression of weight loss from time zero due to selective carbohydrate removal. Hemicellulose losses progressed faster than cellulose loss. This “pretreated” material was then saccharified with commercially relevant Trichoderma reesei cellulases or with cellulases from the brown rot fungi responsible for degrading the wood to test for synergy. With increased decay, a significant increase in saccharification efficiency was apparent but not limited to same-species enzyme sources. We also calculated total sugar yields, and calculations that compensate for sugars consumed by fungi suggest a shorter residence time for fungal colonization than calculations based solely on saccharification yields.     

A comparative systems analysis of polysaccharide‐elicited responses in Neurospora crassa reveals carbon source‐specific cellular adaptations

Filamentous fungi are powerful producers of hydrolytic enzymes for the deconstruction of plant cell wall polysaccharides. However, the central question of how these sugars are perceived in the context of the complex cell wall matrix remains largely elusive. To address this question in a systematic fashion we performed an extensive comparative systems analysis of how the model filamentous fungus Neurospora crassa responds to the three main cell wall polysaccharides: pectin, hemicellulose and cellulose. We found the pectic response to be largely independent of the cellulolytic one with some overlap to hemicellulose, and in its extent surprisingly high, suggesting advantages for the fungus beyond being a mere carbon source. Our approach furthermore allowed us to identify carbon source‐specific adaptations, such as the induction of the unfolded protein response on cellulose, and a commonly induced set of 29 genes likely involved in carbon scouting. Moreover, by hierarchical clustering we generated a coexpression matrix useful for the discovery of new components involved in polysaccharide utilization. This is exemplified by the identification of lat‐1, which we demonstrate to encode for the physiologically relevant arabinose transporter in Neurospora. The analyses presented here are an important step towards understanding fungal degradation processes of complex biomass.     

Males Prefer Small Females in a Dichotomous Choice Test in the Poeciliid Fish Heterandria formosa

Male choice is expected to evolve when females differ in quality, even if male investment in each mating is low. The family Poeciliidae is an example of fishes in which males show little parental investment as they only provide sperm. Up until now, a preference for large females has been found in all species studied. Here we show that unexpectedly, males of the least killifish (Heterandria formosa) prefer to interact with small instead of large females in a dichotomous male choice test, even though large females are more fecund. During a free‐swimming choice experiment, males did not discriminate between females based on their size. We suggest that this unique preference for small females, or the lack of preference for large females, results from strong first male sperm precedence in this species. Smaller females are younger and therefore more likely to be virgin, which probably makes them more profitable mates for males. When presented with a virgin and a mated female of similar size, males showed no preference for either type. This suggests that males do not use pheromone cues to assess female mating status but that they are likely to use female size as a proxy for it.     

Population genetics of Mioscirtus wagneri,a grasshopper showing a highly fragmented distribution

The genetic consequences of population fragmentation and isolation are major issues in conservation biology. In this study we analyse the genetic variability and structure of the Iberian populations of Mioscirtus wagneri, a specialized grasshopper exclusively inhabiting highly fragmented hypersaline low grounds. For this purpose we have used seven species‐specific microsatellite markers to type 478 individuals from 24 localities and obtain accurate estimates of their genetic variability. Genetic diversity was relatively low and we detected genetic signatures suggesting that certain populations of M. wagneri have probably passed through severe demographic bottlenecks. We have found that the populations of this grasshopper show a strong genetic structure even at small geographical scales, indicating that they mostly behave as isolated populations with low levels of gene flow among them. Thus, several populations can be regarded as independent and genetically differentiated units which require adequate conservation strategies to avoid eventual extinctions that in highly isolated localities are not likely to be compensated for with the arrival of immigrants from neighbouring populations. Overall, our results show that these populations probably represent the ‘fragments’ of a formerly more widespread population and highlight the importance of protecting Iberian hypersaline environments due to the high number of rare and endangered species they sustain.     

Functionally Referential Alarm Calls in Tamarins (Saguinus fuscicollis and Saguinus mystax) – Evidence from Playback Experiments

Studies on primate vocalisation have revealed different types of alarm call systems ranging from graded signals based on response urgency to functionally referential alarm calls that elicit predator‐specific reactions. In addition, alarm call systems that include both highly specific and other more unspecific calls have been reported. There has been consistent discussion on the possible factors leading to the evolution of different alarm call systems, among which is the need of qualitatively different escape strategies. We studied the alarm calls of free‐ranging saddleback and moustached tamarins (Saguinus fuscicollis and Saguinus mystax) in northeast Peru. Both species have predator‐specific alarm calls and show specific non‐vocal reactions. In response to aerial predators, they look upwards and quickly move downwards, while in response to terrestrial predators, they look downwards and sometimes approach the predator. We conducted playback experiments to test if the predator‐specific reactions could be elicited in the absence of the predator by the tamarins’ alarm calls alone. We found that in response to aerial alarm call playbacks the subjects looked significantly longer upwards, and in response to terrestrial alarm call playbacks they looked significantly longer downwards. Thus, the tamarins reacted as if external referents, i.e. information about the predator type or the appropriate reaction, were encoded in the acoustic features of the calls. In addition, we found no differences in the responses of S. fuscicollis and S. mystax whether the alarm call stimulus was produced by a conspecific or a heterospecific caller. Furthermore, it seems that S. fuscicollis terrestrial alarm calls were less specific than either S. mystax terrestrial predator alarms or either species’ aerial predator alarms, but because of the small sample size it is difficult to draw a final conclusion.     

Classification ofVibrio vulnificusStrains by the Carbohydrate Composition of Their Capsular Polysaccharides

Pathogenic bacteria are often classified on the basis of the complex polysaccharides found on the surface, usually capsular polysaccharides or lipopolysaccharides. It is common in clinical practice to use reactivity with antisera specific to the various cell surface carbohydrates for this purpose. In this work, we describe a chemotyping method for bacterial capsular polysaccharides which is based on a carbohydrate analysis of an acid hydrolysate of the capsule. High-performance anion-exchange chromatography at high pH (HPAE) with electrochemical detection, which is used for analysis of the hydrolysate, shows preferential sensitivity for sugars. A single acid hydrolysis condition is chosen for screening a large collection of bacterial isolates and a computerized autosampler is used to make possible a large number of rapid analyses. This procedure does not yield a quantitative carbohydrate analysis for the sample but produces a fingerprint which can be used to discriminate among isolates which have different capsular polysaccharide structures. The procedure has been applied to a collection of 120 isolates ofVibrio vulnificus,a water-born species common in shellfish which causes septicemia in immunocompromised individuals, most often from eating of raw oysters. The collection of bacterial isolates includes strains from both clinical cases of septicemia and from such environmental sources such as sea water, sediments, and shellfish. Our results show that a number of unusual sugars including many amino sugars are found in these polysaccharides and that a wide variety of capsular carbotypes inV. vulnificusmay be readily distinguished by the HPAE fingerprint.     

Mechanisms of thrombin-stimulated cell division

Addition of highly purified thrombin t o cultures of several kinds of nondividing fibroblasts brings about cell division. This stimulation occurs in serum-free medium, permitting studies on its mechanism under chemically defined conditions. Previous studies have shown that action of thrombin a t the cell surface is sufficient to cause cell division and that the proteolytic activity of thrombin is required for its mitogenic effect. These results prompted experiments which showed that there is a cell surface receptor for thrombin and that thrombin must hind to its receptor and cleave it to stimulate cell division. Some of the thrombin that hinds to its receptors becomes attached to them by a linkage that appears to be covalent. However, it is presently unknown whether this direct thrombin receptor complex plays a role in the stimulation. These results raise a number of question that should be explored in future studies. They also provide a foundation on which to build hypotheses about tentative molecular mechanisms that might be involved in the stimulation. Knowledge that thrombin must cleave its receptor to bring about cell division suggests two alternative mechanisms for stimulation by proteolysis. In one the receptor is a negative effector which prevents cell division when it is intact, but not after it has been cleaved. Alternatively, a fragment of the receptor could be a positive effector. In this mechanism, proteolysis by thrombin would produce a specific receptor fragment which brings about cell proliferation. If every protease which cleaves the receptor also stimulates cell division, the receptor is probably a negative effector. In contrast, if certain proteases cleave the receptor but do not stimulate the cells, a fragment of the receptor is likely a positive effector. With negative regulation by the receptor, the controlling events would occur before proteolysis of it, and it might be possible to find putative regulatory molecules by identification of nearest neighbors of the receptor. This should be possible by using bifunctional crosslinking reagents. If a fragment of the thrombin receptor turns out to be a positive effector, it should be possible to identify and study fragments by analyzing the metabolic fate of the receptor. Techniques are now available for this kind of analysis and it should also be possible to determine whether receptor fragments remain in the membrane or whether they are translocated to specific sites within the cell. A critical question to be asked is which of these events and interactions involving the thrombin receptor are necessary for stimulation of cell division. It now appears that the best way to answer this question is to examine these events in a large number of cloned cell populations that are responsive or unresponsive to the mitogenic action of thrombin. If a thrombin-mediated event occurs in all responsive clones but is altered or absent in sonie unresponsive clones, it is probably necessary for stimulation of cell division.     

Similarity queries for temporal toxicogenomic expression profiles

We present an approach for answering similarity queries about gene expression time series that is motivated by the task of characterizing the potential toxicity of various chemicals. Our approach involves two key aspects. First, our method employs a novel alignment algorithm based on time warping. Our time warping algorithm has several advantages over previous approaches. It allows the user to impose fairly strong biases on the form that the alignments can take, and it permits a type of local alignment in which the entirety of only one series has to be aligned. Second, our method employs a relaxed spline interpolation to predict expression responses for unmeasured time points, such that the spline does not necessarily exactly fit every observed point. We evaluate our approach using expression time series from the Edge toxicology database. Our experiments show the value of using spline representations for sparse time series. More significantly, they show that our time warping method provides more accurate alignments and classifications than previous standard alignment methods for time series.     

Systematic identifiability testing for unambiguous mechanistic modeling – application to JAK-STAT,MAP kinase,and NF-κB signaling pathway models

Background  

When creating mechanistic mathematical models for biological signaling processes it is tempting to include as many known biochemical interactions into one large model as possible. For the JAK-STAT, MAP kinase, and NF-κB pathways a lot of biological insight is available, and as a consequence, large mathematical models have emerged. For large models the question arises whether unknown model parameters can uniquely be determined by parameter estimation from measured data. Systematic approaches to answering this question are indispensable since the uniqueness of model parameter values is essential for predictive mechanistic modeling.     

基于髓源性抑制细胞的食药用菌多糖抗肿瘤免疫作用机制

髓源性抑制细胞(myeloid-derived suppressor cells,MDSCs)是一种异质性的免疫调节细胞。在癌症机体中,MDSCs是主要的免疫抑制细胞,通过多种途径诱导T淋巴细胞衰竭和凋亡,促进肿瘤细胞逃逸,从而导致肿瘤不受控制地生长,是癌症治疗的主要障碍。目前,MDSCs是癌症药物研究的热点和关键靶点。近年来,研究报道显示多糖可下调MDSCs在癌症患者及肿瘤实验动物体内数量和比例,并诱导免疫抑制功能丧失。食药用菌多糖是天然多糖的主要来源,可以通过多种途径激活肿瘤免疫应答,其抑制MDSCs功能的研究报道逐年增多,目前研究主要集中在香菇多糖、灵芝多糖等部分种类。因此,本文简要描述髓源性抑制细胞在癌症中的免疫抑制功能,然后详细地综述食药用菌多糖对髓源性抑制细胞作用的研究进展,以期为食药用菌多糖在肿瘤免疫药物开发及辅助增强(如免疫检查点抑制剂)等免疫治疗提供新思路。     

Monitoring equal employment opportunity at the workplace: The crucial role of the 1991 Census

The fact that the 1991 Census of Population included a race and ethnic question followed evidence from the 1989 test Census that this was not likely to arouse strong public opposition ‐ while the case for race and ethnic data in the Census was overwhelming. This article focuses on the necessity of the data for the proper implementation of the Race Relations Act 1976, especially in relation to employment. It demonstrates how the linking of race and ethnic manpower statistics in the Census to the analysis of local labour‐market areas could provide employers with the means by which they can measure whether or not they are achieving genuine equality of employment opportunity under the 1976 Act. The article illustrates the recommended approach and shows the substantial effect upon the ‘benchmark’ data that results from analysing each major occupation group separately. Finally, the article notes some possible weaknesses in the 1991 Census data that will be available for monitoring equal employment opportunity in Britain.