Direct and indirect effects of nitrogen deposition on species composition change in calcareous grasslands

Atmospheric nitrogen (N) deposition has been identified as a major threat to biodiversity, but field surveys of its effects have rarely focussed on sites which are actively managed to maintain characteristic species. We analysed permanent quadrat data from 106 plots in nature reserves on calcareous grassland sites in the United Kingdom collected during a survey between 1990 and 1993 and compared the data with the results from resurvey of 48 of these plots between 2006 and 2009. N deposition showed no significant spatial association with species richness, species diversity, or the frequency of species adapted to low nutrient conditions in the 1990–1993 dataset. However, temporal analysis showed that N deposition was significantly associated with changes in Shannon diversity and evenness. In plots with high rates of N deposition, there was a decrease in species diversity and evenness, a decline in the frequency of characteristic calcareous grassland species, and a lower number of rare and scarce species. As all sites had active management to maintain a high diversity and characteristic species, our results imply that even focussed management on nature conservation objectives cannot prevent adverse effects of high rates of N deposition. Structural equation modelling was used to compare different causal mechanisms to explain the observed effects. For change in Shannon diversity, direct effects of N deposition were the dominant mechanism and there was an independent effect of change in grazing intensity. In contrast, for change in herb species number, indirect effects on soil acidity, linked to both N and S deposition, were more important than direct effects of N deposition.     

Predation of annual grass weed seeds in arable field margins

Seeds of three species of annual grass weeds (Alopecurus myosuroides, Avena fatua and Bromus sterilis) were placed in field margins around arable fields in a randomised block split-plot design experiment. The field margin vegetation was either sown or naturally regenerated and either cut or uncut. The seeds were either placed in cages designed to exclude small mammals and birds or were uncaged. The proportion of seeds removed was monitored on 10 occasions and mean seed loss was analysed. In general, a greater proportion of weed seeds was removed from uncaged trays in uncut swards, suggesting predation by small mammals, which inhabit tall grass. This effect was mainly due to removal of seeds of the two large-seeded species (A. fatua and B. sterilis), with A. fatua being especially favoured. It is therefore likely that small mammals play a role in the population dynamics of major crop weeds by feeding on their seeds in field margins, especially when these are dense and uncut.     

Direct and indirect effects of predation,herbivory and surface rugosity on mussel recruitment

Summary The predatory gastropod Nucella lapillus, commonly preys upon the mussel, Mytilus edulis, and is thought to control the distribution and abundance of mussels on the rocky shores of New England, USA. In this study, done in Maine, USA, not only the presence of Nucella lapillus but also the roughness of the experimental surface and the presence of the herbivorous gastropod, Littorina littorea, were manipulated. Four types of surfaces were used as recruitment substrata for mussels: smooth bare granite, aggregations of the barnacle, Semibalanus balanoides, fiberglass resin castings of smooth bare granite and resin castings of aggregations of S. balanoides. To ensure that caged N. lapillus were not starving, barnacles were provided as alternative prey. Experiments showed no detectable effect of N. lapillus on the recruitment of M. edulis. Mussel recruitment was enhanced by surface rugosity and depressed by the activities of L. littorea. Analysis of covariance, using the number of algal species as the covariate, suggested that L. littorea reduced the number of newlyrecruited mussels by removing algae that provided recruitment sites, but no manipulations were done to test this conjecture. It is likely that previous reports of N. lapillus controlling mussel abundance are attributable to N. lapillus preying upon barnacles, which increase surface rugosity and enhance mussel recruitment. Review of literature on feeding preferences of N. lapillus supports this view. When handling times and prey availability are taken into account, Nucella shows a clear preference for barnacles over mussels.     

Direct and indirect effects of toxins on competition dynamics of species in an aquatic environment

Journal of Mathematical Biology - When two competing species are simultaneously exposed in a polluted environment, one species may be more vulnerable to toxins than the other. To study the impact...     

Direct and indirect effects of the pRb tumor suppressor on autophagy

Autophagy, an intracellular degradation pathway involved in cell survival or demise, is tightly controlled by complex regulatory mechanisms. A link between the Rb tumor suppressor and autophagy is now emerging. pRb plays a critical role in cell cycle progression and survival as well as the differentiation of certain cell types. Recently, we have reported that during skeletal myogenesis, Rb-deficient myoblasts fuse to form short myotubes that quickly degenerate. Myotube degeneration was associated with increased autophagic flux and inhibition of autophagy rescued the defect leading to long, twitching myotubes. We propose that Rb-loss sensitizes cells to autophagy via direct and indirect mechanisms and we discuss how these might affect cancer progression and response to chemotherapy.     

Growth and development of Avena fatua (Wild-oat) in the field

The growth and development of field-grown Avena fatua plants were studied for autumn and spring sowings in two consecutive years. The duration of various growth stages from sowing until anthesis was quantified in terms of thermal time (accumulated degree days) or photothermal time (degree days modified by photoperiod). Base temperatures and photoperiods for developmental phases were estimated as those which minimised the coefficient of variation among sowing dates. Relationships were derived between leaf emergence, canopy height, plant leaf area, and photothermal time. Stem extension and flowering occurred earlier in autumn-sown plants than spring-sown plants. Autumn-sown plants produced more leaves on the main stem, and had greater leaf area and above-ground biomass at anthesis than spring-sown plants.     

Direct and indirect effects in microcosm communities of protists

Increased complexity in biological communities can increase the variety of interactions among species, but the relative strengths and long-term consequences of various direct and indirect interactions require further investigation. I studied interactions among four species of protists by monitoring their population dynamics when they were cultured either together or in seven different subset communities. Two protists were bacterivores (Chilomonas and Tetrahymena) and two were predators (Actinosphaerium and Euplotes). Actinosphaerium was omnivorous, and could eat both predatory Euplotes and bacterivores. Three indirect effects occurred among the four species of protists, including indirect facilitation of one predator by the other, apparent competition between bacterivores, and indirect facilitation of one bacterivore by the omnivorous predator. Community structure and invasibility depended on both direct and indirect effects; thus both can be mechanisms for assembly rules.     

An invasive fish species within its native range: community effects and population dynamics of Gambusia affinis in the central United States

1. Management of invasive species benefits from detailed information on the biology of the invaders, both from where they have already invaded, and from within their areas of origin. Western mosquitofish, Gambusia affinis, is a widely invasive and destructive freshwater fish. However, within its native range, G. affinis co‐exists with many other fish species in a wide variety of habitats without obvious harm. 2. In this study, we used data on fish communities within the native range of G. affinis at 154 sites across a broad spatial scale to examine the effects of G. affinis on species richness and diversity of residual (species other than G. affinis) fish assemblages. We further used data based on annual samples at eight fixed river sites over 18 summers to examine temporal population dynamics of G. affinis and to test factors associated with population fluctuations. 3. Higher residual species richness occurred in the presence of G. affinis, but residual diversity did not differ. We found an inverse relationship between relative abundance of G. affinis and residual species richness (although effect size was extremely small), but no effect on residual diversity. 4. Gambusia affinis populations fluctuated markedly across summers at all eight fixed sites, but population sizes at a site over time were not autocorrelated. However, population fluctuations were highly correlated among sites across all years, suggesting that regional factors influenced population size. Regional abundance of G. affinis did not correlate with drought, rainfall or winter temperature, but varied with spring temperature. We suggest earlier onset of reproduction in warmer springs resulted in larger summer populations. 5. Overall, within its native range, G. affinis does not appear to impact negatively on the assemblages in which it occurs, possibly due to fluctuations in its density. These findings suggest that introduced Gambusia populations, and those of other invasive species, warrant careful monitoring over long periods of time where they have invaded. Long‐term monitoring of new populations can establish if they are prone to ‘boom and bust’ dynamics, in which case the invader may be less a threat than sometimes assumed. Population information from long‐term studies, either in their native ranges or at invaded sites, can thus help to form the basis of prudent, cost‐effective management strategies for invasive organisms.     

Direct and indirect effects of microbiota-derived metabolites on neuroinflammation in multiple sclerosis

Multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE) are highly influenced by changes in the microbiota and of microbiota-derived metabolites, including short chain fatty acids, bile acids, and tryptophan derivatives. This review will discuss the effects of microbiota-derived metabolites on neuroinflammation driven by central nervous system-resident cells and peripheral immune cells, and their influence on outcomes of EAE and MS.     

Direct and indirect effects of solar ultraviolet-B radiation on long-term decomposition

As a result of stratospheric ozone depletion, more solar ultraviolet-B radiation (UV-B, 280–315 nm) is reaching the Earth's surface. Enhanced levels of UV-B may, in turn, alter ecosystem processes such as decomposition. Solar UV-B radiation could affect decomposition both indirectly, by changes in the chemical composition of leaves during growth, or directly by photochemical breakdown of litter and through changes in decomposer communities exposed to sunlight. In this experiment, we studied indirect and direct effects of solar UV-B radiation on decomposition of barley (Hordeum vulgare). We used barley straw and leaf litter grown under reduced UV-B (20% of ambient UV-B) or under near-ambient UV-B (90% of ambient UV-B) in Buenos Aires, Argentina, and decomposed the litter under reduced or near-ambient solar UV-B for 29 months in Tierra del Fuego, Argentina. We found that the UV-B treatment applied during growth decreased the decay rate. On the other hand, there was a marginally significant direct effect of elevated UV-B during the early stages of decomposition, suggesting increased mass loss. The effect of UV-B during growth on decomposition was likely the result of changes in plant litter chemical composition. Near-ambient UV-B received during plant growth decreased the concentrations of nitrogen, soluble carbohydrates, and N/P ratio, and increased the concentrations of phosphorus, cellulose, UV-B-absorbing compounds, and lignin/N ratio. Thus, solar UV-B radiation affects the decomposition of barley litter directly and indirectly, and indirect effects are persistent for the whole decomposition period.     

Direct and indirect effects of predation on tadpole community structure in the Amazon rainforest

Abstract The relationship between the distribution of predators (fish, odonates and water beetles) and prey assemblages (amphibian larvae) was investigated in the tropical rainforest of central Amazonas, Brasil. The anuran community uses a variety of waterbodies for reproduction, ranging from streams and streamside ponds to isolated forest ponds. Predators in this system include fish in streams and streamside ponds, and invertebrates (primarily odonate naiads and beetles) in forest ponds. Tadpole species richness and assemblage structure were related to fish density and species richness. No relationships between tadpole assemblages and abiotic pond characteristics were detected. The presence offish explained much of the variation in both species composition and species richness within and among ponds. Some species of tadpole were consistently found to coexist with high densities of fish. Path analyses suggest that while fish have a strong direct effect on tadpole associations and species richness, they also have an indirect effect through invertebrate predators (odonate larvae and coleopteran beetles). Prey survival-strategies such as palatability and behaviour may explain how tadpole species composition is affected by predators at the community level. These findings suggest that the observed patterns of habitat use by larval anurans may be structured in response to the distribution of key predators (fish) in this system.     

福建外来物种入侵现状及对经济社会和生态的影响

福建已成为中国遭受外来物种入侵最严重的省份之一。本文概述了福建主要入侵物种的数量、种类、地理起源、分布、引入途径和入侵特点,系统分析了福建外来物种入侵严重的原因和外来物种入侵对福建生态安全、经济及社会的影响,在此基础上提出了针对外来物种入侵的防控对策。     

Direct and indirect causal effects of heterozygosity on fitness-related traits in Alpine ibex

Heterozygosity–fitness correlations (HFCs) are a useful tool to investigate the effects of inbreeding in wild populations, but are not informative in distinguishing between direct and indirect effects of heterozygosity on fitness-related traits. We tested HFCs in male Alpine ibex (Capra ibex) in a free-ranging population (which suffered a severe bottleneck at the end of the eighteenth century) and used confirmatory path analysis to disentangle the causal relationships between heterozygosity and fitness-related traits. We tested HFCs in 149 male individuals born between 1985 and 2009. We found that standardized multi-locus heterozygosity (MLH), calculated from 37 microsatellite loci, was related to body mass and horn growth, which are known to be important fitness-related traits, and to faecal egg counts (FECs) of nematode eggs, a proxy of parasite resistance. Then, using confirmatory path analysis, we were able to show that the effect of MLH on horn growth was not direct but mediated by body mass and FEC. HFCs do not necessarily imply direct genetic effects on fitness-related traits, which instead can be mediated by other traits in complex and unexpected ways.     

Direct and indirect effects of multiple enemies on water strider mating dynamics

Many different measures of range size are used for both empirical and conservation purposes. The possible consequences of the particular methods used in determining observed patterns of results are seldom considered. Using species of butterflies and freshwater molluses in Britain, we investigate the relationship between the range sizes measured by nine different methods and the sets of rare species they distinguish. A comparison of range sizes measured at different scales. Britain and Europe, is also made for the butterflies. We find that for many studies involving range size the various measures of range size are interchangeable. With respect to the identification of rare species the results are not as clear.     

Direct and indirect effects of grazing on the phytoplankton seasonal succession in an oligotrophic lake

We examined the simultaneous dynamics of phytoplankton and zooplanktonin an oligotrophic lake, as well as the algal response to experimentalmanipulations of herbivore population structure and density.The seasonal succession of phytoplankton is characterized bya shift in dominance from eukaryotic species to prokaryoticcyanobacteria, as in a eutrophic lake. This unusual patternfor an oligotrophic lake is related to the release of zooplanktonphosphorus, rather than to the amount of total phosphorus. Thehighest estimated values of this released phosphorus occur duringthe co-dominance of small-sized species and of one calanoidpopulation, both under natural and experimental conditions.Our experimental results clearly reveal that a blue-green speciesreplaces non-blue-green ones when environmental conditions renderlow or intermediate values for released phosphorus, irrespectiveof the grazing pressure. The absence of predators or high levelsof released phosphorus stimulate non-blue-green growth. Theseresults agree with the successional pattern observed for thealgal assemblage under natural conditions. Nutrient recyclingplays an essential role in the maintenance of the metabolismof the pelagic system, and therefore the prevalence of a topdownregulation mechanism as proposed for such low-nutrient environmentsshould be reconsidered.