Seasonal and interannual variation of subtidal fish assemblages in Wakasa Bay with reference to the warming trend in the Sea of Japan

A bi-monthly underwater visual census was conducted in the subtidal habitat of Nagahama, Wakasa Bay, Sea of Japan, over 5 years from January 2002 to December 2006. A total of 83 fish species and 63,328 individuals were recorded over 120 1-h visual censuses composed of three 2 × 200 m transects. The number of both total individuals (abundance) and species (richness) were strongly correlated with the bottom-water temperature. Species richness was greatest in summer (July–September), with 10–20 species per 400 m², when the sea-bottom temperature was highest (24–28°C), and lowest in winter (January–March), with 1–8 species per 400 m², when the temperature was lowest (10–12°C). Five species, i.e., rockfish, Sebastes inermis, wrasse, Pseudolabrus sieboldi, two species of goby, Acentrogobius pflaumii and Tridentiger trigonocephalus, and pygmy filefish, Rudarius ercodes, were frequently observed and present in more than 200 of the total of 360 total transects. While the presence of most fish species was dependent on water temperature, some species were independent of water temperature, including anchovy, Engraulis japonicus, S. inermis, wasp fish, Hypodytes rubripinnis, A. pflaumii and pufferfish, Takifugu poecilonotus. Jack mackerel, Trachurus japonicus, was the most abundant fish, being most typically seen from spring through autumn, with a total of 21,850 individuals observed over the whole census period. Some species showed strong annual fluctuations in abundance. The interannual stability in fish abundance and species richness was probably because the fish assemblage was composed of a sufficiently large number of species, but with the number of each species fluctuating over time. A comparison of the present survey to one in 1970–72 revealed that over the last 30 years southern fish species have significantly increased whereas those indigenous to northern waters have decreased.

Limnological variability and pelagic fish abundance (Stolothrissa tanganicae and Lates stappersii) in Lake Tanganyika

The abundance of two main pelagic fish species in Lake Tanganyika (Stolothrissa tanganicae and Lates stappersii) has always been observed to fluctuate considerably at different time scales. The inverse correlation between the abundance of these species has often been interpreted as the consequence of predator−prey relations (avoidance behaviour by the prey). However, currently the two species often appear spatially segregated in the lake, S. tanganicae dominating in the north while L. stappersii is generally abundant in the south where it feeds mostly on shrimps. A fluctuating abundance of the species is nevertheless observed. As these fish species have a major importance for the fisheries, we investigated the limnological variability in relation to the short-term variability of fish catches. The abundance of S. tanganicae was positively correlated to plankton biomass (r = 0.65), while water transparency (r = 0.56), depth of mixed layer (r = −0.70) and oxygenated water appeared important drivers for the abundance of L. stappersii. Alternating “mixing” and “stable” states of the epilimnion related to seasonal and internal waves variability are probably determinant for the short-term variability in abundance of S. tanganicae and L. stappersii. In the framework of this study, remote sensing has shown a potentially interesting application for fisheries research at Lake Tanganyika. We observed a close correspondence between phytoplankton blooms at the time of trade winds changes and increased catches of S. tanganicae in the south. The anti-correlated abundance of S. tanganicae and L. stappersii probably mainly reflects the underlying fluctuating limnological environment. Fisheries studies need to integrate limnological and planktonic monitoring to better understand large and complex ecosystems such as Lake Tanganyika.

History,ecology and trends for artificial reefs of the Ligurian sea,Italy

From 1970 to the present 10 artificial reef sites have been developed in coastal waters of the Ligurian Sea, Italy. They range from Ventimiglia, in the west, to La Spezia, in the east, with the largest and best known reef complex being located in the Gulf of Genoa at Loano and consisting of 2,745 m³, about 5,200 t of material and covering a surface of 350 ha. Design and construction practices have advanced from an initial, unsuccessful effort that used automobile bodies (now banned) to current use of custom-designed concrete modules deployed systematically. Funding for reef construction has come since 1983. The earliest aim of reefs was as a physical barrier to protect habitats against illegal otter trawl fishing. Newer objectives include habitat restoration, enhancement of biodiversity and fishing catch, and research to test materials and designs for physical and ecological performance. Reefs also functions as environmental observation stations, with the invasive species Caulerpa taxifolia (Vahl) C. Agardh, being recorded on the reef at Alassio. For some Artificial Reefs (Ars), benthic organisms and fishes, settlement, biomass and development of community are recorded. In Loano AR, immersed in 1986, more than 150 algae species are recorded, more than 200 benthic animal species and 78 species (87 taxa) of fishes. Fifty-six species (61 taxa) of fishes are recorded by visual census, the others are caught only by trammel net and long line. Trammel catches at Loano are on average about 2.32 kg/100 m net. Comparisons among ARs reveal that age of the reef, location and presence of seagrass meadows are crucial for success. An indication of functional equivalence between ARs and natural rocky reefs is seen if both fish and sessile macrobenthos are compared. After 34 years of investigation a database comprising at least one hundred scientific articles based on research programs of up to 15 years, and other unpublished reports, provides information to guide future planning of reefs. On the basis of acquired experience, some management advice is suggested and the best design for the basic module in the Ligurian sea is described. The role of ARs, providing protection of coastal environment against the illegal otter trawling, nursery, microhabitat and food supply, while increasing biodiversity, biomass of benthos and fishes, and facilities for ecotourism, is outlined.

Genetic discrimination of middle Mississippi River <Emphasis Type="Italic">Scaphirhynchus</Emphasis> sturgeon into pallid,shovelnose, and putative hybrids with multiple microsatellite loci

The pallid sturgeon (Scaphirhynchus albus), which is protected under the US endangered species act, and shovelnose sturgeon (S. platorhynchus), which is legally harvested in some locations, are sympatric throughout the range of pallid sturgeon. There is considerable morphological overlap between the species making discrimination problematic. The inability to reliably differentiate between species across all life stages has hampered pallid sturgeon recovery efforts. Furthermore, the two species are believed to hybridize. This study used allele frequency data at multiple microsatellite loci to perform Bayesian and likelihood-based assignment testing and morphological measures and meristics to discriminate pallid, shovelnose, and putative hybrid sturgeons from the middle Mississippi River. Bayesian model-based clustering of the genetic data indicated that two natural genetic units occur in the region. These units correspond to morphologically identified pallid and shovelnose sturgeon. Some individuals were morphologically intermediate and many of these failed to strongly assign genetically as either pallid or shovelnose sturgeon, suggesting they may be hybrids. These data indicate that pallid sturgeon and shovelnose sturgeon are genetically distinct in the middle Mississippi River (F _ST = 0.036, P < 0.0001) and suggest that hybridization between pallid sturgeon and shovelnose sturgeon has occurred in this region with genetic distance estimates indicating the greatest distance is between pallid and shovelnose sturgeon, while hybrid sturgeon are intermediate but closer to shovelnose. This study demonstrates that assignment testing with multiple microsatellite markers can be successful at discriminating pallid sturgeon and shovelnose sturgeon, providing a valuable resource for pallid sturgeon recovery and conservation.

Characterization and management of the commercial sector of the Pohnpei coral reef fishery,Micronesia

Commercial coral reef fisheries in Pohnpei (Micronesia) extract approximately 1,521 kg of reef fish daily (∼500 MT year⁻¹) from 152 km² of surrounding reef. More than 153 species were represented during surveys, with 25 species very common or common within combined-gear catch. Acanthurids contributed the greatest to catch volume, with bluespine unicornfish, Naso unicornis, and orangespine unicornfish, Naso lituratus, among the most frequently observed herbivores. Nighttime spearfishing was the dominant fishing method and inner lagoon areas were primarily targeted. A seasonal sales ban (March–April), intended to reduce pressure on reproductively active serranids, significantly increased the capture volume of other families. Catch was significantly greater during periods of low lunar illumination, suggesting higher fishing success or greater effort, or both. The marketed catch was dominated by juveniles and small adults, based on fishes of known size at sexual maturity. Artificially depressed market prices appear to be catalyzing (potential or realized) overfishing by increasing the volume of fish needed to offset rising fuel prices. These results support the need for comprehensive fisheries management that produces sustainable fishing and marketing practices and promotes shared management and enforced responsibilities between communities and the state. To be effective, management should prohibit nighttime spearfishing. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.

A new freshwater oligochaete species (Clitellata: Enchytraeidae) from Livingston Island,Antarctica

The new enchytraeid species Lumbricillus healyae sp. n. is described from freshwater streams, with well-oxygenated and poorly mineralised waters, situated in Byers Peninsula (Livingston Island, South Shetland Islands, Antarctica). Lumbricillus healyae sp. n. is morphologically close to L. antarcticus and L. incisus, and it is mainly distinguished by the structure of the spermatheca with a short, distinct ectal duct, the oval penial bulb (greatest diameter in the transverse body axis) associated with strong dorso-ventral muscular fibres, and a protrusible pseudopenis. A second undetermined Lumbricillus species is described from a small stream. Study specimens are not fully mature; however, the highly irregular form and size of the testis-sac lobes and the absence of a penial bulb encapsulated under a muscular layer are remarkable. It is probably related to a small group of Lumbricillus species reported from the Antarctic maritime region (L. colpites, L. griseus and L. aestum), characterised by the structure of the male duct, which ends in a simple pore surrounded by glands.

Do tree-level monocultures develop following Canadian boreal silviculture? Tree-level diversity tested using a new method

Concern about forestry practices creating tree-level monoculture plantations exists. Our study investigates tree diversity responses for six early seral boreal forest plantations in Ontario, Canada, representing three conifer species; black spruce (Picea mariana), white spruce (P. glauca), and jack pine (Pinus banksiana), 14 release treatments, and 94 experimental units. Dominance-diversity curves and Simpson’s indices of diversity and evenness indicate tree alpha diversity. We propose a new method for assessing diversity, using percentage of theoretical species maximum (%TSM) which is determined by comparing post-disturbance richness (S) with a theoretical species maximum (TSM). Our results support the hypothesis that alternative vegetation release treatments generally do not reduce tree species diversity levels (%TSM) relative to untreated plots. The only %TSM (P ≤ 0.05) comparison that produced less diversity than in control plots was repeated annual treatments of Vision herbicide at one of the black spruce study sites. Our results generally support the hypothesis that tree monocultures do not develop after vegetation release. Only one out of 94 experimental units developed into a tree layer monoculture (Simpson’s reciprocal diversity index = 1). Again this was one of the repeated annual treatments of Vision herbicide at one of the black spruce study sites—a treatment which is atypical of Canadian forest management.

Type 1 ribosome-inactivating proteins from <Emphasis Type="Italic">Phytolacca dioica</Emphasis> L. leaves: differential seasonal and age expression,and cellular localization

The expression of type 1 ribosome-inactivating proteins (RIPs) in Phytolacca dioica L. leaves was investigated. Fully expanded leaves of young P. dioica plants (up to 3 years old) expressed two novel RIPs, dioicin 1 and dioicin 2. The former was also found in developing leaves from adult P. dioica within about two and a half weeks after leaf development, and the latter continuously synthesized, with no seasonal or ontogenetic constraint. Fully expanded leaves from adult P. dioica expressed four RIPs (PD-Ls1–4) exhibiting seasonal variation. RIPs were localized in the extracellular space, in the vacuole and in the Golgi apparatus of mesophyll cells. Dioicin 1 and dioicin 2 showed rRNA N-β-glycosidase activity and displayed the following properties, respectively: (1) Mr values of 30,047.00 and 29,910.00, (2) pIs of 8.74 and 9.37, and (3) IC₅₀ values of 19.74 (0.658 nM) and 6.85 ng/mL (0.229 nM). Furthermore, they showed adenine polynucleotide glycosylase activity and nicked pBR322 dsDNA. The amino acid sequence of dioicin 2 had 266 amino acid residues, and the highest percentage identity (81.6%) and similarity (84.6%) with PAP-II from Phytolacca americana, while its identity with other RIPs from Phytolaccaceae was around 40%. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.

<Emphasis Type="Italic">Hox</Emphasis> cluster duplication in the basal teleost <Emphasis Type="Italic">Hiodon alosoides</Emphasis> (Osteoglossomorpha)

Large-scale—even genome-wide—duplications have repeatedly been invoked as an explanation for major radiations. Teleosts, the most species-rich vertebrate clade, underwent a “fish-specific genome duplication” (FSGD) that is shared by most ray-finned fish lineages. We investigate here the Hox complement of the goldeye (Hiodon alosoides), a representative of Osteoglossomorpha, the most basal teleostean clade. An extensive PCR survey reveals that goldeye has at least eight Hox clusters, indicating a duplicated genome compared to basal actinopterygians. The possession of duplicated Hox clusters is uncoupled to species richness. The Hox system of the goldeye is substantially different from that of other teleost lineages, having retained several duplicates of Hox genes for which crown teleosts have lost at least one copy. A detailed analysis of the PCR fragments as well as full length sequences of two HoxA13 paralogs, and HoxA10 and HoxC4 genes places the duplication event close in time to the divergence of Osteoglossomorpha and crown teleosts. The data are consistent with—but do not conclusively prove—that Osteoglossomorpha shares the FSGD. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.

Variation of vertebral number in juvenile Oncorhynchus mykiss in relation to upstream distance from the ocean

Vertebral counts in fishes are set early in development by a complex interaction of genetic and environmental factors. Recently, R. M. McDowall showed that vertebral counts can differ between diadromous and non-diadromous galaxiids, and suggested similar life history-based variation might also occur in the closely related Salmonidae. We examined variation in vertebral counts of juvenile rainbow trout, Oncorhynchus mykiss, from within a single large basin where anadromous and non-anadromous forms co-occur. Juveniles were collected at 29 sites within the Klamath River basin using a nested sampling design. Mean vertebral counts varied among regions, among complexes within regions, and among sites within complexes. Regression showed that mean vertebral counts decreased with increasing distance from the ocean. This decrease could not be explained by differences in temperature within the basin during early development. However, the decrease is consistent with the expectation that non-anadromous forms have fewer vertebrae and are more common at sites distant from the ocean, and suggests that further study of the relationship between vertebral counts and life history form in O. mykiss is warranted.

Establishing physiological blood parameters in the loggerhead sea turtle (Caretta caretta)

The loggerhead sea turtle (Caretta caretta), one of the three sea turtle species inhabiting the Mediterranean Sea, is an endangered species. However, although frequently treated in marine animal rescue centers, and the subject of several studies in literature, as yet, few studies have been conducted on large numbers of loggerhead sea turtles in order to establish physiological reference ranges that enable the identification of pathological values. The lack of studies on reference parameters probably depends on the fact that marine turtles treated in wildlife rescue centers are usually in a critical conditions, thus precluding the collection of data on healthy animals and compromising the reliability of any data obtained from them. The present biological study was therefore conducted in order to obtain a database from healthy animals in natural conditions. Serum biochemistry and serum protein electrophoresis were performed on blood samples obtained from 65 healthy adult loggerhead sea turtles captured and delivered to the Sea Turtle Rescue Center of Linosa (Italy); the blood samples were collected during the clinical examination of rescued animals. Laboratory analyses of serum samples were made in order to establish reference parameters, commonly required for laboratory diagnoses in mammals and diseased animals.

Topologies and measurements of turbulent flow in vertical slot fishways

Several vertical slot fishways have been built in France over the last 20 years. This type of pool fish pass is generally very effective in ensuring passage of the target species, particularly diadromous species. However, visual observations have shown that certain small species may be trapped in the large recirculation zones and seem to have difficulty in rapidly passing through very large pools. An experimental study was undertaken to characterize the turbulent flow for various configurations of vertical slot fishways and to determine how they might be modified to facilitate the passage of small species. The characteristics of mean flow and turbulence were studied by particle image velocimetry (PIV) for three slopes (I = 5%, 10%, 15%), three flow discharges (Q = 576, 736, 864 L/s) and four pool widths (B = 1.7, 2, 2.3, 2.7 m). The results showed that the flow pattern always follows one of two topological models depending on the length/width ratio of the pool. A strong link was found between the calculated volumetric dissipated power and the mean kinetic energy of velocity fluctuations measured in the pools. In order to study the extent to which the dimensions of recirculation zones can be reduced, the effect of the insertion of vertical cylinders within the pools was displayed by laser tomography.

Distribution of the invasive New Zealand mudsnail (Potamopyrgus antipodarum) in the Columbia River Estuary and its first recorded occurrence in the diet of juvenile Chinook salmon (Oncorhynchus tshawytscha)

Estuaries play an important role as nurseries and migration corridors for Chinook salmon and other fishes. The invasive New Zealand mudsnail, Potamopyrgus antipodarum (Gray, 1843), has been noted in the Columbia River Estuary and other estuaries in the western USA, yet no studies have addressed the estuarine impacts of this invader. Our data show P. antipodarum is currently found in five peripheral bays and many tributaries of the Columbia River Estuary, where it can constitute a major portion of the benthic invertebrate biomass and where it co-occurs with native amphipod species. We review the history of the P. antipodarum invasion in the Columbia River Estuary and discuss potential impacts on estuarine food webs. We also report the first occurrence of P. antipodarum in the diet of juvenile Chinook salmon from the Columbia River Estuary. Although present in Chinook diets at very low frequencies, our observations of P. antipodarum in Chinook gut contents may represent early stages of food web change due to the establishment of dense estuarine snail populations. Additional research is needed to determine the effects of P. antipodarum on benthic resources, native benthic invertebrates, and benthic predators. We encourage biologists working in western USA estuaries to be alert to the possibility of encountering P. antipodarum in benthic habitats and predator diets.

Differences in daily stem size variation and growth in two hybrid eucalypt clones

Understanding daily stem size variation is important as the net increment of a forest stand is ultimately determined by the accumulation of daily increment events. In this study, measurements of stem size at high spatial and temporal resolution were made using two commercial hybrid Eucalyptus clones [E. grandis × urophylla (GU) and E. grandis × camaldulensis (GC)] over a period of more than 3.5 years in order to better understand how daily stem growth is effected by variations in environmental conditions. It was evident that GU had fewer days on which net growth occurred than GC. However, when growth did occur, GU grew for longer each day and at a higher rate than GC. Thus, it still had an overall larger net stem increment during the study period. The GU clone had a markedly intermittent pattern of growth, such that growth essentially ceased under drought conditions, but responded rapidly when water became available. This confirms other findings that E. grandis × urophylla is more susceptible to drought stress than E. grandis × camaldulensis, but emphasizes that a strategy of “rapid response” when environmental conditions become temporarily non-limiting is a good one in terms of net increment at sites such as in this study.

“Berry Patch” As a Kind of Place—the Ethnoecology of Black Huckleberry in Northwestern Canada

The Gitksan and Wet’suwet’en of Northwestern British Columbia formerly used landscape burning to manage patches of black huckleberry (Vaccinium membranaceum), the most important plant resource of their seasonal round. In view of its significance one might postulate that managed sites would conform to a biophysical or ecological type to maximize return for effort. However, a survey of a number of traditionally managed sites indicated that managed sites are characterized by wide variation in biophysical attributes including elevation, aspect and moisture regime, while proximity to fishing sites, village sites, or sites for harvest of alpine resources proved to be a common factor in known historic berry patch sites. We conclude that characterization of the ideal site type for aboriginal V. membranaceum management must include the economy and social institutions of the local First Nations and requires an enhanced appreciation for the sophistication of the strategies and techniques employed in their management and utilization of the species.

Plant–pollinator interactions in a Mexican Acacia community

Competition for pollination is thought to be an important factor structuring flowering in many plant communities, particularly among plant taxa with morphologically similar and easily accessible flowers. We examined the potential for heterospecific pollen transfer (HPT) in a community of four Acacia species in a highly seasonal tropical habitat in Mexico. Partitioning of pollen flow among sympatric species appears to be achieved, in part, through segregation of flowering in seasonal time, and interspecific differences in pollinator guilds. However, two coflowering species (Acacia macracantha and Acacia angustissima) shared multiple flower visitors, raising the possibility of HPT. Each of these coflowering species showed high intraspecific daily synchrony in pollen release, but dehisce at different times of day. Pollinators rapidly harvested available pollen from one species before abandoning it to visit the flowers of the second later in the day. The activity of shared pollinators, predominantly bees, is thus structured throughout the day, and potential for HPT reduced. Suggestive evidence in favour of a resource partitioning explanation for this pattern is provided by the fact that A. macracantha showed significantly greater intraspecific synchrony when coflowering with a potential competitor (A. angustissima) than when flowering alone. We discuss our results in light of previous work on coflowering acacia assemblages in Tanzania and Australia. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.

Otters and fish farms in the Sado estuary: ecological and socio-economic basis of a conflict

The degree of conflict between otter conservation and fish farming was assessed at Sado estuary (SW Portugal), using ecological (otter visiting rates to fish farms and consumption of commercial fish) and socio-economic (past and current instruments and policies addressing the conflict and a social impact assessment, including a discourse analysis of relevant stakeholders) parameters. The study concerned 14 fish farms producing Sparus aurata, Dicentrarchus labrax, Solea senegalensis and Solea solea. Results indicate high visiting rates in most fish farms (average: 76%), although in only 29%, species stocked were the most consumed prey. Other marine species and freshwater prey were the basis of otter diet in the remaining fish farms. The conflict is quite consensual among most fish farmers, and the results indicate that the perceived conflict by fish farmers has an ecological basis, although there are large gaps between effective and perceived predation. No specific instruments exist in Portugal to address the conflict, but some not specifically targeted can have an effect (e.g. species protection legislation and aquaculture licensing), although with limitations to effectively contribute to its mitigation (e.g. lack of enforcement and supervision). Formulating and assessing solutions is the following step, using a participatory approach to the development and evaluation of mitigation/compensation strategies, capable of providing an effective reconciliation of the conflict.

Parasitism of stem weevils and pollen beetles in winter oilseed rape is differentially affected by crop management and landscape characteristics

We examined the influence of crop management (crop density, nitrogen fertilization level) and landscape parameters [areal proportion of oilseed rape (OSR), Brassica napus L. var. oleifera Metzg. (Brassicaceae), and proportions, lengths and distances of various non-crop habitats] on the parasitism of stem weevils (Ceutorhynchus spp.; Coleoptera: Curculionidae) and pollen beetles (Meligethes spp.; Coleoptera: Nitidulidae) by parasitic wasps (Hymenoptera: Ichneumonidae). Larvae of host insects were sampled in 29 winter OSR fields located in landscapes ranging from structurally simple to complex. Spatial scales of landscape effects were considered at eight radii (250–2,000 m) centered in the studied OSR fields. Stem weevil parasitism was unaffected by crop management variables but negatively related to roadside strip length at radius 250 m and grassy fallow area at a radius of 500 m. Pollen beetle parasitism was positively related to the crop density and to lengths of roadside strips and hedges within a radius of 250 m. Thousand kernel mass of OSR was positively related to pollen beetle parasitism but unrelated to stem weevil parasitism.