Effects of historical forest contraction on the phylogeographic structure of Australo‐Papuan populations of the red‐legged pademelon (Macropodidae: Thylogale stigmatica)

Geographic patterns of genetic variation are strongly influenced by historical changes in species habitats. Whether such patterns are common to co‐distributed taxa may depend on the extent to which species vary in ecology and vagility. We investigated whether broad‐scale phylogeographic patterns common to a number of small‐bodied vertebrate and invertebrate species in eastern Australian forests were reflected in the population genetic structure of an Australo‐Papuan forest marsupial, the red‐legged pademelon (Macropodidae: Thylogale stigmatica). Strong genetic structuring of mtDNA haplotypes indicated the persistence of T. stigmatica populations across eastern Australia and southern New Guinea in Pleistocene refugial areas consistent with those inferred from studies of smaller, poorly dispersing species. However, there was limited divergence of haplotypes across two known historical barriers in the northeastern Wet Tropics (Black Mountain Barrier) and coastal mideastern Queensland (Burdekin Gap) regions. Lack of divergence across these barriers may reflect post‐glacial recolonization of forests from a large, central refugium in the Wet Tropics. Additionally, genetic structure is not consistent with the present delimitation of subspecies T. s. wilcoxi and T. s. stigmatica across the Burdekin Gap. Instead, the genetic division occurs further to the south in mideastern Queensland. Thus, while larger‐bodied marsupials such as T. stigmatica did persist in Pleistocene refugia common to a number of other forest‐restricted species, species‐specific local extinction and recolonization events have resulted in cryptic patterns of genetic variation. Our study demonstrates the importance of understanding individualistic responses to historical climate change in order to adequately conserve genetic diversity and the evolutionary potential of species.     

Phylogeography of the pademelons (Marsupialia: Macropodidae: Thylogale) in New Guinea reflects both geological and climatic events during the Plio‐Pleistocene

Aim Alternative hypotheses concerning genetic structuring of the widespread endemic New Guinean forest pademelons (Thylogale) based on current taxonomy and zoogeography (northern, southern and montane species groupings) and preliminary genetic findings (western and eastern regional groupings) are investigated using mitochondrial sequence data. We examine the relationship between the observed phylogeographical structure and known or inferred geological and historical environmental change during the late Tertiary and Quaternary. Location New Guinea and associated islands. Methods We used primarily museum specimen collections to sample representatives from Thylogale populations across New Guinea and three associated islands. Mitochondrial cytochrome b and control region sequence data were used to construct phylogenies and estimate the timing of population divergence. Results Phylogenetic analyses indicated subdivision of pademelons into ‘eastern’ and ‘western’ regional clades. This was largely due to the genetic distinctiveness of north‐eastern and eastern peninsula populations, as the ‘western’ clade included samples from the northern, southern and central regions of New Guinea. Two tested island groups were closely related to populations north of the Central Cordillera; low genetic differentiation of pademelon populations between north‐eastern New Guinea and islands of the Bismarck Archipelago is consistent with late Pleistocene human‐mediated translocations, while the Aru Islands population showed divergence consistent with cessation of gene flow in the mid Pleistocene. There was relatively limited genetic divergence between currently geographically isolated populations in subalpine and nearby mid‐montane or lowland regions. Main conclusions Phylogeographical structuring does not conform to zoogeographical expectations of a north/south division across the cordillera, nor to current species designations, for this generalist forest species complex. Instead, the observed genetic structuring of Thylogale populations has probably been influenced by geological changes and Pleistocene climatic changes, in particular the recent uplift of the north‐eastern Huon Peninsula and the lowering of tree lines during glacial periods. Low sea levels during glacial maxima also allowed gene flow between the continental Aru Island group and New Guinea. More work is needed, particularly multi‐taxon comparative studies, to further develop and test phylogeographical hypotheses in New Guinea.     

Restricted responsiveness to noise interference in two anurans from the southern temperate forest

Animals adopt different strategies to communicate by means of sound in noisy environments such that some species increase, while others decrease their vocal activity in the presence of interference. Anuran amphibians from diverse latitudes exhibit both kinds of responses. Recent studies have shown that males of Batrachyla taeniata and Batrachyla antartandica from the temperate austral forest do not call in response to the presentation of advertisement calls of sympatric congeneric species. In contrast, Batrachyla leptopus responds to these signals in a similar way as to conspecific calls. The responsiveness of B. taeniata to natural abiotic interference has also been tested and found that noises of such sources produce strong increases in vocal activity. To assess the diversity in responsiveness to acoustic intrusion in this group, we exposed males of B. leptopus and B. antartandica to prolonged pre‐recorded natural abiotic noises of wind, creek, rain, and to a band‐pass noise centered at 2,000 Hz, at 67 dB Sound Pressure Level (SPL). The subjects did not increase their vocal activity significantly when exposed to these sounds and to band‐pass noise at increasing intensities (55–79 dB SPL). These results contrast with the increase in vocal activity observed previously in B. taeniata to continuous abiotic noise and point to the existence of diverse strategies to confront acoustic intrusion among related species. The lack of vocal activation observed also contrasts with the responsiveness of B. leptopus to heterospecific signals, but parallels the lack of response to such sounds in B. antartandica. Furthermore, the results obtained contrast with the responsiveness of these species to synthetic prolonged sounds observed in previous studies, suggesting that the modes of responses to acoustic intrusion may depend on previous experience, rather than having a species‐specific nature.     

Urbanization and fragmentation have opposing effects on soil nitrogen availability in temperate forest ecosystems

Nitrogen (N) availability relative to plant demand has been declining in recent years in terrestrial ecosystems throughout the world, a phenomenon known as N oligotrophication. The temperate forests of the northeastern U.S. have experienced a particularly steep decline in bioavailable N, which is expected to be exacerbated by climate change. This region has also experienced rapid urban expansion in recent decades that leads to forest fragmentation, and it is unknown whether and how these changes affect N availability and uptake by forest trees. Many studies have examined the impact of either urbanization or forest fragmentation on nitrogen (N) cycling, but none to our knowledge have focused on the combined effects of these co-occurring environmental changes. We examined the effects of urbanization and fragmentation on oak-dominated (Quercus spp.) forests along an urban to rural gradient from Boston to central Massachusetts (MA). At eight study sites along the urbanization gradient, plant and soil measurements were made along a 90 m transect from a developed edge to an intact forest interior. Rates of net ammonification, net mineralization, and foliar N concentrations were significantly higher in urban than rural sites, while net nitrification and foliar C:N were not different between urban and rural forests. At urban sites, foliar N and net ammonification and mineralization were higher at forest interiors compared to edges, while net nitrification and foliar C:N were higher at rural forest edges than interiors. These results indicate that urban forests in the northeastern U.S. have greater soil N availability and N uptake by trees compared to rural forests, counteracting the trend for widespread N oligotrophication in temperate forests around the globe. Such increases in available N are diminished at forest edges, however, demonstrating that forest fragmentation has the opposite effect of urbanization on coupled N availability and demand by trees.     

Impacts of forest fragmentation on species composition and forest structure in the temperate landscape of southern Chile

Aim Few studies have explicitly examined the influence of spatial attributes of forest fragments when examining the impacts of fragmentation on woody species. The aim of this study was to assess the diverse impacts of fragmentation on forest habitats by integrating landscape‐level and species‐level approaches. Location The investigation was undertaken in temperate rain forests located in southern Chile. This ecosystem is characterized by high endemism and by intensive recent changes in land use. Method Measures of diversity, richness, species composition, forest structure and anthropogenic disturbances were related to spatial attributes of the landscape (size, shape, connectivity, isolation and interior forest area) of forest fragments using generalized linear models. A total of 63 sampling plots distributed in 51 forest fragments with different spatial attributes were sampled. Results Patch size was the most important attribute influencing different measures of species composition, stand structure and anthropogenic disturbances. The abundance of tree and shrub species associated with interior and edge habitats was significantly related to variation in patch size. Basal area, a measure of forest structure, significantly declined with decreasing patch size, suggesting that fragmentation is affecting successional processes in the remaining forests. Small patches also displayed a greater number of stumps, animal trails and cow pats, and lower values of canopy cover as a result of selective logging and livestock grazing in relatively accessible fragments. However, tree richness and β‐diversity of tree species were not significantly related to fragmentation. Main conclusions This study demonstrates that progressive fragmentation by logging and clearance is associated with dramatic changes in the structure and composition of the temperate forests in southern Chile. If this fragmentation process continues, the ability of the remnant forests to maintain their original biodiversity and ecological processes will be significantly reduced.     

Interglacial genetic diversification of Moussonia deppeana (Gesneriaceae), a hummingbird‐pollinated,cloud forest shrub in northern Mesoamerica

Recent empirical work on cloud forest‐adapted species supports the role of both old divergences across major geographical areas and more recent divergences attributed to Pleistocene climate changes. The shrub Moussonia deppeana is distributed in northern Mesoamerica, with geographically disjunct populations. Based on sampling throughout the species range and employing plastid and nuclear markers, we (i) test whether the fragmented distribution is correlated with main evolutionary lineages, (ii) reconstruct its phylogeographical history to infer the history of cloud forest in northern Mesoamerica and (iii) evaluate a set of refugia/vicariance scenarios for the region and demographic patterns of the populations whose ranges expanded and tracked cloud forest conditions during the Last Glacial Maximum. We found a deep evolutionary split in M. deppeana about 6–3 Ma, which could be consistent with a Pliocene divergence. Comparison of variation in plastid and nuclear markers revealed several lineages mostly congruent with their isolated geographical distribution and restricted gene flow among groups. Results of species distribution modelling and coalescent simulations fit a model of multiple refugia diverging during interglacial cycles. The demographic history of M. deppeana is not consistent with an expanding–contracting cloud forest archipelago model during the Last Glacial Maximum. Instead, our data suggest that populations persisted across the geographical range throughout the glacial cycles, and experienced isolation and divergence during interglacial periods.     

暖温带落叶阔叶林动态变化的模拟研究

用森林动态林窗模型 FORET1模拟了暖温带落叶阔叶林的长期变化特征。模型参数取自暖温带地区长期森林研究和经营的历史数据 ,对过去数据中缺少的参数进行了实地测定 ,并用观测的数据对模型作了检验。结果表明模型能较好地模拟暖温带落叶阔叶林的长期动态变化特征。通过模拟可以看出 ,森林的净初级生产力没有明显变化规律且极度不稳定 ,峰值出现在30 a左右 ,相似于世界上其它地区森林动态格局变化 ,生物量格局呈循环状态变化 ,循环周期大致在 110 a左右。     

Genetic structure in the European endemic seabird,Phalacrocorax aristotelis,shaped by a complex interaction of historical and contemporary,physical and nonphysical drivers

Geographically separated populations tend to be less connected by gene flow, as a result of physical or nonphysical barriers preventing dispersal, and this can lead to genetic structure. In this context, highly mobile organisms such as seabirds are interesting because the small effect of physical barriers means nonphysical ones may be relatively more important. Here, we use microsatellite and mitochondrial data to explore the genetic structure and phylogeography of Atlantic and Mediterranean populations of a European endemic seabird, the European shag, Phalacrocorax aristotelis, and identify the primary drivers of their diversification. Analyses of mitochondrial markers revealed three phylogenetic lineages grouping the North Atlantic, Spanish/Corsican and eastern Mediterranean populations, apparently arising from fragmentation during the Pleistocene followed by range expansion. These traces of historical fragmentation were also evident in the genetic structure estimated by microsatellite markers, despite significant contemporary gene flow among adjacent populations. Stronger genetic structure, probably promoted by landscape, philopatry and local adaptation, was found among distant populations and those separated by physical and ecological barriers. This study highlights the enduring effect of Pleistocene climatic changes on shag populations, especially within the Mediterranean Basin, and suggests a role for cryptic northern refugia, as well as known southern refugia, on the genetic structure of European seabirds. Finally, it outlines how contemporary ecological barriers and behavioural traits may maintain population divergence, despite long‐distance dispersal triggered by extreme environmental conditions (e.g. population crashes).     

Do leaf margins of the temperate forest flora of southern South America reflect a warmer past?

Aim   Our aims were: (1) to characterize the linear relationship between the proportion of woody dicotyledonous species with entire-margined leaves ( E ) and mean annual temperature (MAT) from a southern temperate flora that still harbours many lineages that originated under warmer climates; (2) to compare this relationship with those developed from floras of different regions of the world; and (3) to contrast temperature predictions based on leaf margins of the native southern flora versus the naturalized alien flora, mostly of boreal origin.
Location   The temperate forest of southern South America (TFSA).
Methods   At each 1° latitudinal band, we estimated E based on species latitudinal ranges and MAT from both an isotherm map and a global temperature grid. We also calculated E from five local floras located between 40 and 43° S, and from the naturalized alien flora of Nahuel Huapi National Park in southern Argentina.
Results   We found a close relationship between E and MAT for the TFSA. Equations developed from floras of the Northern Hemisphere overestimated extant temperatures of this biome by 6–10 °C at both geographical and local spatial scales. On the other hand, MAT predictions from leaf margins of the alien flora were similar to the actual MAT. A published regression between E and MAT from tropical South America was remarkably similar to the one we estimated from the TFSA. This tropical equation predicted accurately the temperatures observed for this temperate biome based on leaf margins of the native flora.
Main conclusions   Despite massive plant extinction due to environmental cooling and biogeographical isolation during the Tertiary, leaf-margin analysis reveals that the flora of the TFSA still reflects its original development under the warmer conditions of western Gondwana and its past connections with low-latitude forest floras of tropical South America.     

Historical biogeography and post-glacial recolonization of South American temperate rain forest by the relictual marsupial Dromiciops gliroides

Aim Long‐term climatic variation has generated historical expansions and contractions of species ranges, with accompanying fragmentation and population bottlenecks, which are evidenced by spatial variation in genetic structure of populations. We examine here hypotheses concerning dispersal and vicariance in response to historical geoclimatic change and potential isolation produced by mountains and water barriers. Location The temperate rain forest of southern South America, which is distributed from coastal Chile, including the large continental island of Chiloé, across the Andes into Argentina. Methods We investigated our hypotheses in the phylogenetically and biogeographically relictual marsupial Dromiciops gliroides. We examined 56 specimens, which resulted from field samples and museum study skins from 21 localities. We evaluated the influence of two major barriers, the Andean cordillera and the waterway between the mainland and the large island of Chiloé, by performing Bayesian and maximum‐likelihood phylogenetic analyses on sequences of 877 base pairs of mitochondrial DNA. We further tested the contribution of the proposed geographical barriers using analysis of molecular variance (amova ). We also evaluated the responses of populations to historical north–south shifts of habitat associated with glacial history and sea‐level change. Results Our analyses revealed a phylogeny with three clades, two of which are widespread and contain nearly all the haplotypes: a northern clade (36–39° S) and a southern clade (40–43° S). These two clades contain forms from both sides of the Andes. Within the southern clade, island and mainland forms were not significantly differentiated. Tests of recent demographic change revealed that southern populations have experienced recent expansion, whereas northern populations exhibit long‐term stability. The direction of recent gene flow and range expansion is predominantly from Chile to Argentina, with a modest reciprocal exchange across the Andes. Recent gene flow from the island of Chiloé to the mainland is also supported. Main conclusions The genetic structure of contemporary D. gliroides populations suggests recent gene flow across the Andes and between the mainland and the island of Chiloé. Differences in demographic history that we detected between northern and southern populations have resulted from historical southward shifts of habitat associated with glacial recession in South America. Our results add to a growing literature that demonstrates the value of genetic data to illuminate how environmental history shapes species range and population structure.     

Impact of commercial forest management on geophilous carabid beetles (Coleoptera: Carabidae) in tall,wet Eucalyptus obliqua forest in southern Tasmania

Abstract The impact of silvicultural practices (clearfelling, slash burning and sowing) on carabid beetle communities in tall wet Eucalyptus obliqua forests in southern Tasmania was examined using traplines of pitfalls in a chronosequence of regenerating coupes. Total species richness (n= 18) was modest compared to other temperate forests and was not systematically changed by forest management, although it was considerably lower in 20 year old regrowth than in younger regrowth or old-growth controls, possibly due to habitat simplification. The Shannon-Weiner Index was at a minimum in intermediate aged regeneration. TWINSPAN analysis assisted recognition of beetle communities typical of broad stages in the forest succession, with a major dichotomy between most old-growth sites plus young sites and intermediate plus advanced regeneration sites. Vector fitting of environmental variables in an ordination of the sites by non-metric multidimensional scaling revealed a significant influence for the age of regeneration and litter depth, but not bare ground percentage or soil pH. Survival of carabids in the habitat mosaic created by commercial forestry activity is likely to depend on both reinvasion from edges and survival of individuals in the fire-protected refuges that exist within the coupes. Pioneer species were winged, small in size, and non-endemic whereas the opposite was true of the fauna in the older sites. Carabids in eucalypt forests have good potential as indicators but their seasonality in occurrence demands that sampling be extended over most of the year.     

High abundance of Crenarchaeota in a temperate acidic forest soil

The objective of the study was to elucidate the depth distribution and community composition of Archaea in a temperate acidic forest soil. Numbers of Archaea and Bacteria were measured in the upper 18 cm of the soil, and soil cores were sampled on two separate occasions using quantitative PCR targeting 16S rRNA genes. Maximum numbers of Archaea were 0.6-3.8 x 10(8) 16S rRNA genes per gram of dry soil. Numbers of Bacteria were generally higher, but Archaea always accounted for a high percentage of the total gene numbers (12-38%). The archaeal community structure was analysed by the construction of clone libraries and by terminal restriction length polymorphism (T-RFLP) using the same Archaea-specific primers. With the reverse primer labelled, T-RFLP analysis led to the detection of four T-RFs. Three had lengths of 83, 185 and 218 bp and corresponded to uncultured Crenarchaeota. One (447 bp) was assigned to Thermoplasmales. Labelling of the forward primer allowed further separation of the T-RF into Crenarchaeota Group I.1c and Group I.1b, and indicated that Crenarchaeota of the Group I.1c were the predominant 16S rRNA genotype (相似文献   

Prey of White-throated Hawks (Buteo albigula) in the southern temperate forest of Argentina

ABSTRACT.   We examined the diet of White-throated Hawks ( Buteo albigula ) during the incubation and nestling periods in the southern temperate forest of Argentina. Pellets ( N = 74) and prey remains ( N = 59) were collected at 10 nests from 1998 to 2003, and preys delivered to two nests were monitored during the 2001–2002 breeding seasons. White-throated Hawks fed on small mammals, birds, lizards, and insects. The three methods of identifying prey (pellets, prey remains, and direct observation) produced different results. All types of prey except large birds were detected in pellets, and arthropods may have been over-represented in pellets due to secondary consumption. No remains of either arthropods or reptiles were identified among prey remains collected at nest sites and, during nest observations, we were unable to identify many of the prey items delivered by adults. Our results indicate that accurate determination of the diet of White-throated Hawks requires more than one method of identifying prey.     

帽儿山温带落叶阔叶林细根生物量、生产力和周转率

细根在森林生态系统能量流动与物质循环中占有重要地位,但其生物量、生产和周转测定尚存在很大的不确定性,而且局域尺度空间变异机制尚不清楚.本研究分析了帽儿山温带天然次生林活细根生物量和死细根生物量在0～100 cm剖面的垂直分布与0～20 cm细根的季节动态、生产力和周转率,对比了采用连续根钻法(包括决策矩阵法和极差法)和...     

东北东部森林生态系统土壤碳贮量和碳通量

土壤碳是高纬度地区森林生态系统最大的碳库,是森林生态系统碳循环的极其重要组分。研究了东北东部典型的6种次生林生态系统(天然蒙古栎林、杨桦林、杂木林、硬阔叶林、红松人工林和落叶松人工林)的土壤碳动态,包括(1)量化土壤有机碳(SOC)含量、碳密度及周转时间,(2)比较不同森林生态系统的土壤表面CO2通量(RS)年通量差异,(3)建立RS年通量及其分量与SOC的量化关系。研究结果表明:阔叶天然次生林和针叶人工林的SOC含量变化范围分别为52.63~66.29 g.kg-1和42.15~49.15 g.kg-1;平均SOC密度分别为15.57和17.16 kg.m-2;平均SOC周转时间分别为32a和48a。各个生态系统的RS依次为杂木林951 gC.m-2.a-1、硬阔叶林892 gC.m-2.-a 1、杨桦林812 gC.m-2.-a 1、蒙古栎林678gC.m-2.-a 1、红松林596 gC.m-2.-a 1和落叶松林451 gC.m-2.a-1。RS年通量及其分量(土壤异养呼吸和自养呼吸)与SOC含量呈显著的正相关,但其相关程度因土层不同而异(R2=0.747~0.933)。同一生态系统中,SOC含量随土深增加而降低,而SOC密度和SOC周转时间随深度增加而增大。采用统一规范的研究方法,获取大量有代表性的森林生态系统土壤碳贮量和RS的实测数据,是减少区域尺度碳平衡研究中不确定性的不可缺少的研究内容。     

Variation of carbon and nitrogen stoichiometry along a chronosequence of natural temperate forest in northeastern China

Aims Carbon (C) and nitrogen (N) stoichiometry contributes to understanding elemental compositions and coupled biogeochemical cycles in ecosystems. However, we know little about the temporal patterns of C:N stoichiometry during forest development. The goal of this study is to explore the temporal patterns of intraspecific and ecosystem components' variations in C:N stoichiometry and the scaling relationships between C and N at different successional stages.Methods Along forest development in a natural temperate forest, northeastern China, four age gradients were categorized into ca. 10-, 30-, 70- and 200-year old, respectively, and three 20 m × 20 m plots were set up for each age class. Leaves, branches, fine roots and fresh litter of seven dominant species as well as mineral soil at depth of 0–10 cm were sampled. A Universal CHN Elemental Analyzer was used to determine the C and N concentrations in all samples.Important findings Intraspecific leaf C, N and C:N ratios remained stable along forest development regardless of tree species; while C, N concentrations and C:N ratios changed significantly either in branches or in fine roots, and they varied with tree species except Populus davidiana (P < 0.05). For ecosystem components, we discovered that leaf C:N ratios remained stable when stand age was below ca. 70 years and dominant tree species were light-demanding pioneers such as Betula platyphylla and Populus davidiana, while increased significantly at the age of ca. 200 years with Pinus koraiensis as the dominant species. C:N ratios in branches and fresh litter did not changed significantly along forest development stages. C concentrations scaled isometrically with respect to N concentrations in mineral soil but not in other ecosystem components. Our results indicate that, leaf has a higher intraspecific C:N stoichiometric stability compared to branch and fine root, whereas for ecosystem components, shifts in species composition mainly affect C:N ratios in leaves rather than other components. This study also demonstrated that C and N remain coupled in mineral soils but not in plant organs or fresh litter during forest development.     

Distribution and abundance of vines along the light gradient in a southern temperate rain forest

Question: Are vines light‐demanding species? Location: Temperate evergreen rain forest of southern Chile (40°39′S, 72°11′W). Methods: In 45 plots of 25 m² distributed in treefall canopy gaps, secondary forest stands and old‐growth forest (15 plots per light environment), all climbing and non‐supported vines were counted and identified to species level, and canopy openness was quantified using hemispherical photographs. Vine abundance and diversity (species richness and Simpson's index) were compared in the three light environments and similarity between vine communities was estimated using Jaccard's similarity coefficient. We also determined the relationship between light niche breadth and local dominance at the species level. Results: In total there were 2510 vine individuals of 14 species. Canopy openness was significantly different in the three light environments. Species richness, diversity, community composition and density of vines were similar in treefall gaps, secondary and old‐growth forest. Of the seven more common vine species, which accounted for 91% of all vines, three had even distribution, two were more abundant in the shaded understorey, and two had higher density in well‐lit sites. Local dominance of vine species and niche breadth were not significantly associated. Conclusions: Our study in a temperate rain forest questions the widespread notion of vines as pioneer‐like species, which may be a consequence of the abundance of some lianas in disturbed sites of tropical forests. Functional arguments are needed to justify a general hypothesis on light requirements of vines, which constitute a vast group of species.