La biosynthèse de l'acide indolyl-3-acétique en liaison avec le métabolisme du tryptophol et de l'indolyl-3-acétaldéhyde chez Rhizobium

Several indolic compounds are formed when tryptophan or tryptamine is metabolized by Rhizobium. Among these are indole-3-acetaldehyde (IAAld), tryptophol (Tr-ol), and indole-3-acetic acid (IAA). The metabolic relationship among the three compounds was investigated. The experiments were carried out either in the culture medium of growing Rhizobium cultures or in suspensions of washed bacterial cells. In neither case Tr-ol would function as a precursor of IAA, but tryptophan-2-¹⁴G gave rise to the formation of both IAA and Tr-ol. The ratio of IAA to Tr-ol depended on the experimental conditions, shaking favoring the formation of IAA. Also IAAld gave rise to the formation of IAA and Tr-ol when incubated with suspensions of washed cells. The ratio of the two compounds depended on experimental conditions such as pH value and shaking, the latter reducing the formation of Tr-ol. These results cannot be explained by the assumption of a dismutation mechanism catalyzed by a single enzymatic unit. The operation of two enzyme systems, responsible for the reduction and the oxidation, respectively, of IAAld is suggested and discussed.     

Metabolism of Indole-3-acetaldehyde

Infiltration of indolcacelaldehyde (IAAId) into living tissues of sonic lower and higher plants gives rise simultaneously to both indoleacetic acid (IAA) and Iryptophol (T-ol). But on a molar basis, there is no correlation between the products indicating a disimitation. Expressed juice of Avena coleoptiles by itself, exhibits only IAA forming activity. Approximately two moles of IAAld are consumed for each mole of IAA formed at pH 4.5, but only if necessary corrections are made for losses of substrate and products. Addition of reduced NAD or NADP readily induces tryptophol formation. But even at pH 4.5, adding reduced NADP causes greater tryptophol formation, leading to a marked divergence in the acid-alcohol ratio. Varying the pH in the presence of reduced coenzymes also alters the ratio, with alcohol formation predominating. NAD and NADP have no influence on the formation of IAA from IAAld by the whole cytoplasm of Avena coleoptiles. Whole cytoplasm of Asparagus shoots forms both IAA and tryptophol from IAAld, but in widely varying amounts, devoid of any suggestive stoichiometry between the products. With the acetone powder of Avena coleoptiles including the first leaf, data indicating an apparent disimitation of IAAld are obtainable only at pH 4.5. On altering the pH however, unequal amounts of the two products, namely IAA and tryptophol, are formed and hence a different ratio results. Acetone powders of wheat coleoptiles and Asparagus shoots do not yield data supporting disimitation either at pH 4.5 or 7.2. IAA formation in Avena is aerobic while tryptophol formation is seemingly independent of oxygen supply. The former activity is selectively abolished by 10^?3M dithionite while the latter activity suffers a similar suppression in the presence of 10^?3M manganese sulphate. Varying the IAAld concentration results in unequal amounts of the two products, revealing the dissimilar affinity of the two activities for the common substrate Saturation to a level of 30 percent with ammonium sulphate throws out most of the acid-forming activity whereas the alcohol-forming system appears mostly in the protein fraction precipitated between 30 and 40 percent saturation. The enzyme system of Avena coleoptiles oxidizing IAAld to IAA can also be easily separated by Sephadex gel filtration and its independent activity demonstrated in the total absence of tryptophol formation. Based on the heterogeneous properties of the two activities, metabolism of IAAld in Avena coleoptiles is believed to be mediated by two independent enzyme systems without the intervention of a mutase or a dismutation mechanism.     

Metabolism of indole-3-acetaldoxime in plants

Summary Living tissues of diverse plants representing 17 families were infiltrated with indole-3-acetaldoxime (IAAld oxime) in phosphate buffer, pH 6, and incubated for 3 hours at 25°C. Indole compounds were then extracted, separated and identified by paper or thin-layer chromatography (TLC). Indole-3-acetic acid (IAA) was quantitatively determined. Every tissue tested converted the oxime to IAA and tryptophol (T-ol). While accumulation of indole-3-acetonitrile (IAN) was observed in the non-acidic fractions of extracts of tissues of 8 species, indole-3-acetaldehyde (IAAld) accumulated in only a single tissue viz. Amaranthus shoot.IAAld oxime undergoes spontaneous hydrolysis at pH values below 4.7 leading to the formation of IAAld. Ce l-free preparations of etiolated Avena coleoptiles appear to contain an enzyme system capable of hydrolysing the oxime to IAAld. In the presence of such preparations, more IAAld and IAA are formed at all tested durations than the spontaneously formed IAAld. In the presence of bisulfite or semicarbazide, no IAA is formed, suggesting the intermediary formation of IAAld. The compound trapped with sodium bisulfite resembles very closely synthetic IAAld in its IR spectrum.In intact tissues, therefore, IAAld oxime appears to be first hydrolysed to IAAld which is then partly oxidized to IAA and mostly reduced to T-ol. Besides other evidence, formation of T-ol in every instance is believed to indicate the intermediary formation of IAAld. The nitrile pathway is considered to be only of minor importance in normal IAA biogenesis in the majority of higher plants.     

Occurrence and Metabolism of Indoleacetaldehyde in Certain Higher Plant Tissues Under Aseptic Conditions

Qualitative and quantitative evidence based on thin-layer chromatography and the Avena curvature test respectively, are presented for the normal and natural occurrence of indoleacetic acid (IAA), indoleacetaldehyde (IAAld) and tryptophol in the etiolated shoots of Pisum sativum, grown, harvested and extracted under aseptic conditions. Non-aseptic pea shoots contain much more IAA and IAAld than aseptic ones. Extraneous contribution to the indole pool of pea plants grown under non-sterile atmosphere, other than by the inherent agency of the plant itself, is therefore not excluded. Indoleacetaldehyde metabolizing activity of the tissues and cell-free preparations of etiolated Avena seedlings, leading to the production of IAA and tryplophol, is unaffected by the antibiotics actinomycin and streptomycin over a wide range of concentrations. Formation of IAA from IAAld is suppressed by a small degree (10 to 15 %) by chloramphenicol. But this antibiotic does not influence the concurrent production of tryptophol. It is deduced that epiphytic bacteria play little role in the transformation of IAAld to IAA and tryptophol by Avena tissues.     

Proposed Enzymes of Auxin Biosynthesis and Their Regulation III. Some Properties of Pea Indolylacetaldehyde Oxidase

Indole-3-acetaldehyde oxidase (IAAld-oxidase) occurs in pea in two forms, of which the first, more active enzyme, has its pH optimum at 4.5, while the second, barely half as active, has a pH optimum at 7.0. Only the pH 4.5 oxidase can be resolved from the acetone powder. Besides IAA1d the more stable IA1d was used as substrate in testing the enzymatic activity. The pea enzyme seems not to be a dismutase since indolylmethanol or indolylethanol were not formed as products. Pyridine nucleotide coenzymes did not activate the partially purified enzyme. The pH 4.5 oxidase was inhibited by more than 50 % by IAA > L-asp > tryptophol > indoleacetylaspartic acid > 2,4-D (at 1 mM concentration). The pH 7.0 oxidase was inhibited relatively more weakly, a stronger than 50 % inhibition was caused only by NAA > L-asp. The oxidases were clearly distinguished by the response to L-asparagine (1 mM): the activity of the pH 4.5 oxidase was increased (+ 12 %), while the activity of the pH 7.0 oxidase was decreased (-71 %). In preliminaryin vitro experiments the phytohormones (1 mM) kinetin and GA₃ increased the conversion of IAAld to IAA, while ABA decreased it.     

Quantitative Determination of Indole-3-Acetaldehyde. II.

The method by Larsen and Klungsöyr (1964) for the quantitative determination of indole-3-acetaldehyde (IAAld) was modified for the purpose of eliminating the need for filtration after oxidation of the IAAld to indole-3-acetic acid (IAA). The essentials of the modified method are as follows: Samples of IAAld or IAA containing 0.015 to 0.15 μmol (ca. 2.5 to 25 μg) dissolved in peroxide-free ether are evaporated to dryness and redissolved in 1.5 ml 0.02 M Ag2SO4. The oxidation is carried out in dim light by adding 0.5 ml 0.12 N NaOH. After 1.5 min, 2 ml of a modified Salkowski reagent are added. The optical density at 525 nm is read on a spectrophotometer after 75 min. The modified Salkowski reagent consists of 100 ml 0.05 M Fe2(SO4)3 in 1.5 N H2SO4; 240 ml H2O; and 160 ml cone. H2SO4 (sp. gr. 1.84). O.D. readings are identical for equal samples of IAAld and IAA (the latter used as a standard) up to 0.08 μmol (O.D. = 0.32). Larger quantities of IAAld may be determined when using pure IAAld as a standard, but at 0.20 μmol the O.D. for IAAld is lower than for IAA (0.69 as against 0.72). Indole-3-acetonitrile, tryptophol, indole-3-carboxylic acid, and indole-3-aldehyde all give O.D. values lower than 0.1 when tested at 0.20 μmol under the same conditions as described for IAAld and IAA.     

Indole-3-Ethanol Oxidase in Phycomyces blakesleeanus Bgff: Characterization of the Enzyme

Indole-3-ethanol oxidase (IEt oxidase) from Phycomyces blakesleeanus Bgff.(P.b.) is a 56 kD polypeptide as determined by gel filtration. The reaction products are indole-3-acetaldehyde (IAAld) and, possibly, H₂O₂. Enzyme activity (33-45% ammonium sulfate fraction) shows a broad pH optimum and simple Michaelis-Menten kinetics (K_m 7 micromolar, Hill coefficient 0.95). Flavin adenine dinucleotide increases enzyme activity particularly under anaerobic conditions. Iodoacetate and HgCl₂ drastically inhibit the enzyme. With IAAld, product inhibition is observed at micromolar concentrations. IAA and some other acidic substituted indoles reduce enzyme activity but only at higher concentrations.     

The formation of tryptophol glucoside in the tryptamine metabolism of pea seedlings

Summary Tryptamine was converted by etiolated pea seedlings into IAA, tryptophol, and an appreciable amount of an unknown metabolite. This latter compound was characterised by TLC and electrophoresis and identified, by mass spectrometry and enzymatic cleavage, as tryptophol glycoside: indole-3-ethyl--d-glycopyranoside.Abbreviations IAA indole-3-acetic acid - IAAld indole-3-acetaldehyde - TOH tryptophol - TO-glc tryptophol glucoside     

Purification and characterization of an alcohol dehydrogenase from Lithospermum erythrorhizon cell cultures

An NAD-dependent alcohol dehydrogenase has been purified to apparent homogeneity from cell suspension cultures of Lithospermum erythrorhizon Sieb. et Zucc. (Boraginaceae), using protamine sulphate and ammonium sulphate precipitation and chromatography on DEAE-Sephacel, Superdex 200, hydroxyapatite and HiTrap blue. The enzyme is a homodimer with a M_r of ca. 77,000. Each subunit with a M_r of 40,000 contains two zinc atoms. Its isoelectric point was found at pH 5.0. The best alcohol substrate of the enzyme is ethanol. The pH optimum for ethanol oxidation is at pH 8.7 and for acetaldehyde reduction at pH 4.6. The Michaelis constants for ethanol and NAD are 2.49 and 0.05 (pH 8.7), and for acetaldehyde and NADH 2.2 and 0.078 mM (pH 4.6), respectively. Partial amino acid sequences of the purified enzyme showed high homology to alcohol dehydrogenases from other plants.Abbreviations ADH alcohol dehydrogenase - DTT dithiothreitol - PMSF dephenylmethylsulfonyl fluoride - PVPP polyvinylpolypyrrolidone - IAA indole-3-acetic acid - TFA trifluoroacetic acid     

Pathways of IAA Production from Tryptophan by Plants and by Their Epiphytic Bacteria: A Comparison

Metabolites of tryptophan were investigated using 2 systems: a bacterial (Peastem homogenates containing the epiphytic bacteria) and a plant system (pea stem sections under sterile conditions). The plant system produces: indolepyruvic acid (IPyA), indoleacetaldehyde (IAAld) indoleacetic acid (IAA), indoleethanol (tryptophol, IAAol), indolecarboxylie acid (ICA), indolecarboxaldehyde (ICAld). Bacteria produce additionally: indoleactic acid (ILA), tryptamine (TNH₂) and the unknown Xb and Yb, but IAAld was not detected. A nonacidic inhibitor extract from pea stems decreases the gain of IAA, IPyA, ILA, Yb. It increases the gain of IAAld, IAAol, TNH₂, Xb, and (only in the bacterial system) ICA and ICAld. Three sites of inhibitor action are suggested, namely the steps Try → IPyA, TNH₂→ IAAld, IAAld → IAA.     

Synthesis of Optically Active Diols by Escherichia coli Transformant Cells that Express the Glycerol Dehydrogenase Gene of Hansenula polymorphaDL‐1

Chiral alcohols are useful as intermediates for the synthesis of drugs. In the production of chiral alcohols, microbial enzymes are promising since high optical purity is required. Under these conditions, the reaction by resting cells is more convenient and inexpensive than by an enzyme reaction. Chiral 1,2‐propanediol and 2,3‐butanediol were obtained using cells expressing the enzyme which demonstrated high stereospecificity. By means of recombinant cells expressing the glycerol dehydrogenase of Hansenula polymorpha DL‐1, the medium was enriched with (S)‐1,2‐propanediol (98 % enantiometric excess, e.e.) during a 24‐h incubation, whereas the (R)‐form was removed from 100 mM of the racemate (R:S = 1:1). For an asymmetric reduction, a recombinant was constructed which also expressed the glucose dehydrogenase gene of Bacillus subtilis origin as an NADH reproducer. In the resting cell reaction, the pH control at 7.5 promoted the conversion from ketone to alcohol. (2R,3R)‐2,3‐butanediol (e.e. > 99.9 %; 308 mM) was produced from 800 mM acetoin (R:S = 3:4); (R)‐1,2‐propanediol (e.e. > 99.9 %; 550 mM) from 800 mM acetol in a 33‐h incubation by the addition of glucose and ketone with pH control. In this reaction, (S)‐forms of both 2,3‐butanediol and 1,2‐propanediol were not produced. The pH control and feeding of the substrates were uncomplicated. The production process of the chiral alcohol by the recombinants which expresses glycerol dehydrogenase proved convenient.     

Benzyl alcohol metabolism by Pseudomonas putida: a paradox resolved

Evidence is presented for the existence in Pseudomonas putida of two NAD-linked dehydrogenases that function sequentially to oxidize benzyl alcohol. Induction of muconate lactonizing enzyme, a 3-oxoadipate pathway enzyme, indicated that P. putida oxidized benzyl alcohol to benzoate. Polyacrylamide gel electrophoresis with activity staining and enzymatic assays for an NAD-dependent dehydrogenase both showed that cells contained a single, constitutive alcohol dehydrogenase capable of oxidizing benzyl alcohol. This enzyme was shown to have the same specificity in extracts of glucose-grown as in benzy alcoholgrown cells. An NAD-aldehyde dehydrogenase oxidized benzaldehyde but was most active with normal alkyl aldehydes. This aldehyde dehydrogenase was shown to be induced, by enzymatic assays and by activity staining of polyacrylamide gel electropherograms, not only in cells grown on benzyl alcohol, but also in cells grown on ethanol. These experiments suggested that the aldehyde dehydrogenase was induced by the alcohol being oxidized rather than the substrate aldehyde.In sum, the evidence from enzyme assays and polyacrylamide gel electrophoresis of extracts indicates that Pseudomonas putida catabolizes benzyl alcohol slowly when it is the sole carbon and energy source, by the action of a constitutive, nonspecific, alcohol dehydrogenase and an alcohol-induced, nonspecific aldehyde dehydrogenase to yield benzoate, which is further metabolized via the 3-oxoadipate (beta-ketoadipate) pathway.In memory of R. Y. Stanier     

Heterologous Expression and Characterization of an Alcohol Dehydrogenase from the Archeon <Emphasis Type="Italic">Thermoplasma acidophilum</Emphasis>

Analysis of the Thermoplasma acidophilum DSM 1728 genome identified two putative alcohol dehydrogenase (ADH) open reading frames showing 50.4% identity against each other. The corresponding genes Ta0841 and Ta1316 encode proteins of 336 and 328 amino acids with molecular masses of 36.48 and 36.01 kDa, respectively. The genes were expressed in Escherichia coli and the recombinant enzymes were functionally assessed for activity. Throughout the study only Ta1316 ADH resulted active in the oxidative reaction in the pH range 2–8 (optimal pH 5.0) and temperatures from 25 to 90°C (optimal 75°C). This ADH catalyzes the oxidation of several alcohols such as ethanol, methanol, 2-propanol, butanol, and pentanol during the reduction of the cofactor NAD⁺. The highest activity was found in the presence of ethanol producing optically pure acetaldehyde. The specific enzyme activity of the purified Ta1316 ADH with ethanol as a substrate in the optimal conditions was 628.7 U/mg.     

Isolation of Indole-3-ethanol Oxidase from Cucumber Seedlings

Previous work in this laboratory has shown that cucumber (Cucumis sativus L.) seedlings contain large amounts, relative to other indolic compounds, of extractable indole-3-ethanol (IEt); tracer studies have established that IEt is metabolized to IAA. We have now succeeded in isolating an enzyme from these seedlings which catalyzes the oxidation of IEt to indole-3-acetaldehyde (IAAld). The identification of the product as IAAld was based on solvent partitioning of the free aldehyde and its bisulfite adduct and radiochromatography following incubation of enzyme with ¹⁴C-IEt. A novel, quantitative colorimetric test for IAAld was also developed utilizing the Salkowski reagent. Partial purification of the enzyme was achieved by salt gradient chromatography on Bio-Rex 70, heating the preparation to 70 C, and chromatography on Sephadex G-150. This purification procedure yielded an enzyme activity purified in excess of 3000-fold, and studies on a standardized Sephadex column suggest a molecular weight of the enzyme of approximately 105,000. The reaction was found to proceed only aerobically; and, in the absence of other electron acceptors, O₂ appears to be reduced to H₂O₂. The enzyme has nearly maximum activity from pH 8 to 11.     

A cold-active and thermostable alcohol dehydrogenase of a psychrotorelant from Antarctic seawater, <Emphasis Type="Italic">Flavobacterium frigidimaris</Emphasis> KUC-1

An NAD⁺-dependent alcohol dehydrogenase of a psychrotorelant from Antarctic seawater, Flavobacterium frigidimaris KUC-1 was purified to homogeneity with an overall yield of about 20% and characterized enzymologically. The enzyme has an apparent molecular weight of 160k and consists of four identical subunits with a molecular weight of 40k. The pI value of the enzyme and its optimum pH for the oxidation reaction were determined to be 6.7 and 7.0, respectively. The enzyme contains 2 gram-atoms Zn per subunit. The enzyme exclusively requires NAD⁺ as a coenzyme and shows the pro-R stereospecificity for hydrogen transfer at the C4 position of the nicotinamide moiety of NAD⁺. F. frigidimaris KUC-1 alcohol dehydrogenase shows as high thermal stability as the enzymes from thermophilic microorganisms. The enzyme is active at 0 to over 85°C and the most active at 70°C. The half-life time and k _cat value at 60°C were calculated to be 50 min and 27,400 min⁻¹, respectively. The enzyme also shows high catalytic efficiency at low temperatures (0–20°C) (k _cat/K _m at 10°C; 12,600 mM⁻¹ min⁻¹) similar to other cold-active enzymes from psychrophiles. The alcohol dehydrogenase gene is composed of 1,035 bp and codes 344 amino acid residues with an estimated molecular weight of 36,823. The sequence identities were found with the amino acid sequences of alcohol dehydrogenases from Moraxella sp. TAE123 (67%), Pseudomonas aeruginosa (65%) and Geobacillus stearothermophilus LLD-R (56%). This is the first example of a cold-active and thermostable alcohol dehydrogenase.     

Optically Active Bis-β-keto Sulfonium Ylid

Particulate alcohol dehydrogenase of acetic acid bacteria that is mainly participated in vinegar fermentation was purified to homogeneous state from Gluconobacter suboxydans IFO 12528. Solubilization of enzyme from the bacterial membrane fraction by Triton X-100 and subsequent fractionation on DEAE-Sephadex A-50 and hydroxylapatite was successful in enzyme purification. A cytochrome c-like component was tightly bound to the dehydrogenase protein and existed as an enzyme-cytochrome complex. It was also confirmed that the alcohol dehydrogenase is not a cytochrome component itself. The molecular weight of the enzyme was determined to be 150,000, and gel electrophoresis showed the presence of three subunits having a molecular weight of 85,000, 49,000 and 14,400. The smallest subunit was corresponded to the cytochrome c-like component. Ethanol was oxidized in the presence of dyes in vitro but NAD or NADP were not required as hydrogen acceptor. Unlike NAD- linked alcohol dehydrogenase in yeast or liver and other primary alcohol dehydrogenases in methanol utilizing bacteria, the enzyme from the acetic acid bacteria showed its optimum pH at fairly acidic pH.     

TADH,the thermostable alcohol dehydrogenase from <Emphasis Type="Italic">Thermus</Emphasis> sp. ATN1: a versatile new biocatalyst for organic synthesis

The alcohol dehydrogenase from Thermus sp. ATN1 (TADH) was characterized biochemically with respect to its potential as a biocatalyst for organic synthesis. TADH is a NAD(H)-dependent enzyme and shows a very broad substrate spectrum producing exclusively the (S)-enantiomer in high enantiomeric excess (>99%) during asymmetric reduction of ketones. TADH is active in the presence of 10% (v/v) water-miscible solvents like 2-propanol or acetone, which permits the use of these solvents as sacrificial substrates in substrate-coupled cofactor regeneration approaches. Furthermore, the presence of a second phase of a water-insoluble solvent like hexane or octane had only minor effects on the enzyme, which retained 80% of its activity, allowing the use of these solvents in aqueous/organic mixtures to increase the availability of low-water soluble substrates. A further activity of TADH, the production of carboxylic acids by dismutation of aldehydes, was investigated. This reaction usually proceeds without net change of the NAD⁺/NADH concentration, leading to equimolar amounts of alcohol and carboxylic acid. When applying cofactor regeneration at high pH, however, the ratio of acid to alcohol could be changed, and full conversion to the carboxylic acid was achieved.     

Purification and characterization of an anti-Prelog alcohol dehydrogenase from <Emphasis Type="Italic">Oenococcus oeni</Emphasis> that reduces 2-octanone to (<Emphasis Type="Italic">R</Emphasis>)-2-octanol

An anti-Prelog alcohol dehydrogenase from Oenococcus oeni that reduces 2-octanone to (R)-2-octanol was purified by 26-fold to homogeneity. The enzyme had a homodimeric structure consisting of 49 kDa subunits, required NADPH, but not NADH, as a cofactor and was a Zn-independent short-chain dehydrogenase. Aliphatic methyl ketones (chain length ≥6 carbon atoms) and aromatic methyl ketones were the preferred substrates for the enzyme, the best being 2-octanone. Maximum enzyme activity with 2-octanone was at 45°C and at pH 8.0.     

Purification and Characterization of a Novel (<Emphasis Type="Italic">R</Emphasis>)-1-Phenylethanol Dehydrogenase from <Emphasis Type="Italic">Lysinibacillus</Emphasis> sp. NUST506

A novel (R)-1-phenylethanol dehydrogenase was successfully purified from Lysinibacillus sp. NUST506 by preparative polyacrylamide gel electrophoresis. The enzyme is a NAD+-dependent oxidoreductase. The molecular weight of the (R)-1-phenylethanol dehydrogenase measured by SDS-PAGE was about 28 kDa. Furthermore, the optimal reaction conditions for the oxidative reaction were 70°C and pH 9.5 and for the reductive reaction were 65°C and pH 6.5. Under the optimal conditions, the K_M and k_cat values with (R)-1-phenylethanol as a substrate were found to be 0.78 mM and 123 s^–1 and with acetophenone they were 0.56 mM and 125 s^–1, respectively. The (R)-1-phenylethanol dehydrogenase became more stable at pH 9.5 in comparison with pH 5.0 and high stability was noticed at 4 and 37°C. Properties of the enzyme place it as a promising candidate for industrial applications.