Iron oxidation stimulates organic matter decomposition in humid tropical forest soils

Humid tropical forests have the fastest rates of organic matter decomposition globally, which often coincide with fluctuating oxygen (O₂) availability in surface soils. Microbial iron (Fe) reduction generates reduced iron [Fe(II)] under anaerobic conditions, which oxidizes to Fe(III) under subsequent aerobic conditions. We demonstrate that Fe (II) oxidation stimulates organic matter decomposition via two mechanisms: (i) organic matter oxidation, likely driven by reactive oxygen species; and (ii) increased dissolved organic carbon (DOC) availability, likely driven by acidification. Phenol oxidative activity increased linearly with Fe(II) concentrations (P < 0.0001, pseudo R² = 0.79) in soils sampled within and among five tropical forest sites. A similar pattern occurred in the absence of soil, suggesting an abiotic driver of this reaction. No phenol oxidative activity occurred in soils under anaerobic conditions, implying the importance of oxidants such as O₂ or hydrogen peroxide (H₂O₂) in addition to Fe(II). Reactions between Fe(II) and H₂O₂ generate hydroxyl radical, a strong nonselective oxidant of organic compounds. We found increasing consumption of H₂O₂ as soil Fe(II) concentrations increased, suggesting that reactive oxygen species produced by Fe(II) oxidation explained variation in phenol oxidative activity among samples. Amending soils with Fe(II) at field concentrations stimulated short‐term C mineralization by up to 270%, likely via a second mechanism. Oxidation of Fe(II) drove a decrease in pH and a monotonic increase in DOC; a decline of two pH units doubled DOC, likely stimulating microbial respiration. We obtained similar results by manipulating soil acidity independently of Fe(II), implying that Fe(II) oxidation affected C substrate availability via pH fluctuations, in addition to producing reactive oxygen species. Iron oxidation coupled to organic matter decomposition contributes to rapid rates of C cycling across humid tropical forests in spite of periodic O₂ limitation, and may help explain the rapid turnover of complex C molecules in these soils.     

Effect of soil nitrogen,carbon and moisture on methane uptake by dry tropical forest soils

Methane uptake was measured for two consecutive years for four forest and one savanna sites in a seasonally dry tropical region of India. The soils were nutrient-poor and well drained. These sites differed in vegetational cover and physico-chemical features of the soil. There were significant differences in CH₄ consumption rates during the two years (mean 0.43 and 0.49 mg m^-2 h^-1), and at different sites (mean 0.36 to 0.57 mg m^-2 h^-1). The mean uptake rate was higher (P < 0.05) in dry seasons than in the rainy season at all the sites. There was a significant season and site interaction, indicating that the effect of different seasons differed across the sites. There was a positive relation between soil moisture and CH₄ uptake rates during summer (the driest period) and a negative relation during the rest of the year. The results suggested that seasonally dry tropical forests are a strong sink for CH₄, and C and N status of soils regulates the strength of the sink in the long term.     

Lignin decomposition is sustained under fluctuating redox conditions in humid tropical forest soils

Lignin mineralization represents a critical flux in the terrestrial carbon (C) cycle, yet little is known about mechanisms and environmental factors controlling lignin breakdown in mineral soils. Hypoxia is thought to suppress lignin decomposition, yet potential effects of oxygen (O₂) variability in surface soils have not been explored. Here, we tested the impact of redox fluctuations on lignin breakdown in humid tropical forest soils during ten‐week laboratory incubations. We used synthetic lignins labeled with ¹³C in either of two positions (aromatic methoxyl or propyl side chain C_β) to provide highly sensitive and specific measures of lignin mineralization seldom employed in soils. Four‐day redox fluctuations increased the percent contribution of methoxyl C to soil respiration relative to static aerobic conditions, and cumulative methoxyl‐C mineralization was statistically equivalent under static aerobic and fluctuating redox conditions despite lower soil respiration in the latter treatment. Contributions of the less labile lignin C_β to soil respiration were equivalent in the static aerobic and fluctuating redox treatments during periods of O₂ exposure, and tended to decline during periods of O₂ limitation, resulting in lower cumulative C_β mineralization in the fluctuating treatment relative to the static aerobic treatment. However, cumulative mineralization of both the C_β‐ and methoxyl‐labeled lignins nearly doubled in the fluctuating treatment relative to the static aerobic treatment when total lignin mineralization was normalized to total O₂ exposure. Oxygen fluctuations are thought to be suboptimal for canonical lignin‐degrading microorganisms. However, O₂ fluctuations drove substantial Fe reduction and oxidation, and reactive oxygen species generated during abiotic Fe oxidation might explain the elevated contribution of lignin to C mineralization. Iron redox cycling provides a potential mechanism for lignin depletion in soil organic matter. Couplings between soil moisture, redox fluctuations, and lignin breakdown provide a potential link between climate variability and the biochemical composition of soil organic matter.     

Suppression of methanogenesis by dissimilatory Fe(III)-reducing bacteria in tropical rain forest soils: implications for ecosystem methane flux

Tropical forests are an important source of atmospheric methane (CH₄), and recent work suggests that CH₄ fluxes from humid tropical environments are driven by variations in CH₄ production, rather than by bacterial CH₄ oxidation. Competition for acetate between methanogenic archaea and Fe(III)‐reducing bacteria is one of the principal controls on CH₄ flux in many Fe‐rich anoxic environments. Upland humid tropical forests are also abundant in Fe and are characterized by high organic matter inputs, steep soil oxygen (O₂) gradients, and fluctuating redox conditions, yielding concomitant methanogenesis and bacterial Fe(III) reduction. However, whether Fe(III)‐reducing bacteria coexist with methanogens or competitively suppress methanogenic acetate use in wet tropical soils is uncertain. To address this question, we conducted a process‐based laboratory experiment to determine if competition for acetate between methanogens and Fe(III)‐reducing bacteria influenced CH₄ production and C isotope composition in humid tropical forest soils. We collected soils from a poor to moderately drained upland rain forest and incubated them with combinations of ¹³C‐bicarbonate, ¹³C‐methyl labeled acetate (¹³CH₃COO^?), poorly crystalline Fe(III), or fluoroacetate. CH₄ production showed a greater proportional increase than Fe²⁺ production after competition for acetate was alleviated, suggesting that Fe(III)‐reducing bacteria were suppressing methanogenesis. Methanogenesis increased by approximately 67 times while Fe²⁺ production only doubled after the addition of ¹³CH₃COO^?. Large increases in both CH₄ and Fe²⁺ production also indicate that the two process were acetate limited, suggesting that acetate may be a key substrate for anoxic carbon (C) metabolism in humid tropical forest soils. C isotope analysis suggests that competition for acetate was not the only factor driving CH₄ production, as ¹³C partitioning did not vary significantly between ¹³CH₃COO^? and ¹³CH₃COO^?+Fe(III) treatments. This suggests that dissimilatory Fe(III)‐reduction suppressed both hydrogenotrophic and aceticlastic methanogenesis. These findings have implications for understanding the CH₄ biogeochemistry of highly weathered wet tropical soils, where CH₄ efflux is driven largely by CH₄ production.     

Carbon isotopic fractionation in subtropical brazilian grassland soils. Comparison with tropical forest soils

The natural relationship¹³C/¹²C determined in three soil profiles under grass vegetation indicated a depletion in organic¹³C at depth: theδ ¹³C was between −18‰ and −15‰ in the A horizons and ranged from −18 to −22‰ at depth. Previous work showed that in forest soils, whereδ ¹³C was near −28‰ in the upper horizon, there was, on the contrary, a relative enrichment of the lower strata. This meant thatδ ¹³C, initially different in the various topsoils, became more equal at depth. Comparison between dark, deep horizons (sombric horizons), which are certainly of illuvial origine, would confirm this:δ ¹³C of grassland and a forest sombric horizon were almost equal at around −22‰. These results might mean that, in natural ecosystems, the isotopic carbon composition of the soil underlying humus would be independent of the vegetation type. This would have practical implications for the use of¹³C as a tracer for soil organic matter studies.     

Hysteresis in the temperature response of carbon dioxide and methane production in peat soils

The ability to predict the effects of climate change on trace gas fluxes requires a knowledge of microbial temperature responses. However, the response of a microbial community to temperature in a given substrate may be complicated by its thermal history. To examine the effect of sequentially changing temperature on methane and carbon dioxide production in different peat types, we incubated anaerobic peat samples from 3 types of northern peatlands, a bog, a sedge fen and a cedar swamp, in both rising and falling temperature regimes. Graphic and statistical comparisons of the different temperature regimes suggest hysteresis in microbial response to temperature, although the absolute rates at any given temperature often did not differ. Where regressions for temperature response (Arrhenius plots) were significant, they generally differed between temperature regimes. The greatest differences among treatments occurred during the first half of the 40-d incubation. Increases in carbon dioxide production were similar across all peat types, but methanogenesis varied widely: methane production was uniformly low in the bog peat but increased sharply with temperature in the other two peat types. The complicating effect of history or chronology on substrate responses to environmental stimuli may restrain our ability to model the responses of complex systems to changing conditions.     

Butachlor inhibits production and oxidation of methane in tropical rice soils under flooded condition

In laboratory incubation experiments, application of a commercial formulation of the herbicide butachlor (N-butoxymethyl-2-chloro-2',6'-diethyl acetanilide) to three tropical rice soils, widely differing in their physicochemical characteristics, under flooded condition inhibited methane (CH4) production. The inhibitory effect was concentration dependent and most remarkable in the alluvial soil. Thus, following application of butachlor at 5, 10, 50 and 100 microg g(-1) soil, respectively, cumulative CH4 production in the alluvial soil was inhibited by 15%, 31%, 91% and 98% over unamended control. Since CH4 production was less pronounced in the sandy loam and acid sulfate soil, the impact of amendment with butchalor, albeit inhibitory, was less extensive than the alluvial soil. Inhibition of CH4 production in butachlor-amended alluvial soil was related to the prevention in the drop in redox potential as well as low methanogenic bacterial population especially at high concentrations of butachlor. CH4 oxidation was also inhibited in butachlor-amended alluvial soil with the inhibitory effect being more prevalent under flooded condition. Inhibition in CH4 oxidation was related to a reduction in the population of soluble methane monooxygenase producing methanotrophs. Results demonstrate that butachlor, a commonly used herbicide in rice cultivation, even at very low concentrations can affect CH4 production and its oxidation, thereby influencing the biogeochemical cycle of CH4 in flooded rice soils.     

土壤湿度对中国南部热带森林土壤甲烷吸收的影响

森林土壤是一个重要的大气甲烷的汇。然而,相较于寒带和温带,在热带尤其是东南亚地区,森林土壤甲烷通量的观测较少,这限制了目前对热带森林土壤甲烷通量与环境因子之间关系的认识,也给热带森林土壤甲烷汇的估算带来了一定的不确定性。在中国海南省吊罗山国家森林公园的热带森林土壤,采用激光光谱法测量了2016年9月至2018年9月逐月的土壤甲烷通量,并分析了其与周围环境因子的关系。结果表明：研究区土壤是甲烷的汇,山顶样地的年平均吸收量为0.95 kg CH₄-C hm^-2 a^-1,山脚样地的年平均吸收量为1.93 kg CH₄-C hm^-2 a^-1。干季(11月—次年4月)的甲烷吸收通量明显高于湿季(5—10月),占到全年甲烷吸收的68%。山顶样地年平均土壤湿度为19.2%,年内的波动较小(2.8%)。而山脚样地的年平均湿度相对较低,为12.7%,且年内波动大(5.4%)。土壤湿度是控制甲烷吸收最主要的环境因子,可以解释月际甲烷吸收变化的76%,甲烷吸收通量与土壤温度的相...     

Interactive effects of drought and N fertilization on the spatial distribution of methane assimilation in grassland soils

Soil methanotrophic bacteria constitute the only globally relevant biological sink for atmospheric methane (CH₄). Nitrogen (N) fertilizers as well as soil moisture regime affect the activity of these organisms, but the mechanisms involved are not well understood to date. In particular, virtually nothing is known about the spatial distribution of soil methanotrophs within soil structure and how this regulates CH₄ fluxes at the ecosystem scale. We studied the spatial distribution of CH₄ assimilation and its response to a factorial drought × N fertilizer treatment in a 3‐year experiment replicated in two grasslands differing in management intensity. Intact soil cores were labelled with ¹⁴CH₄ and methanotrophic activity mapped at a resolution of ～100 μm using an autoradiographic technique. Under drought, the main zone of CH₄ assimilation shifted down the soil profile. Ammonium nitrate (NH₄NO₃) and cattle urine reduced CH₄ assimilation in the top soil, but only when applied under drought, presumably because NH₄⁺ from fertilizers was not removed by plant uptake and nitrification under these conditions. Ecosystem‐level CH₄ fluxes measured in the field did show no or only very small inhibitory effects, suggesting that deeper soil layers fully compensated for the reduction in top soil CH₄ assimilation. Our results indicate that the ecosystem‐level CH₄ sink cannot be inferred from measurements of soil samples that do not reflect the spatial organization of soils (e.g. stratification of organisms, processes, and mechanisms). The autoradiographic technique we have developed is suited to study methanotrophic activity in a relevant spatial context and does not rely on the genetic identity of the soil bacterial communities involved, thus ideally complementing DNA‐based approaches.     

Fine root dynamics and trace gas fluxes in two lowland tropical forest soils

Fine root dynamics have the potential to contribute significantly to ecosystem‐scale biogeochemical cycling, including the production and emission of greenhouse gases. This is particularly true in tropical forests which are often characterized as having large fine root biomass and rapid rates of root production and decomposition. We examined patterns in fine root dynamics on two soil types in a lowland moist Amazonian forest, and determined the effect of root decay on rates of C and N trace gas fluxes. Root production averaged 229 (±35) and 153 (±27) g m^?2 yr^?1 for years 1 and 2 of the study, respectively, and did not vary significantly with soil texture. Root decay was sensitive to soil texture with faster rates in the clay soil (k=?0.96 year^?1) than in the sandy loam soil (k=?0.61 year^?1), leading to greater standing stocks of dead roots in the sandy loam. Rates of nitrous oxide (N₂O) emissions were significantly greater in the clay soil (13±1 ng N cm^?2 h^?1) than in the sandy loam (1.4±0.2 ng N cm^?2 h^?1). Root mortality and decay following trenching doubled rates of N₂O emissions in the clay and tripled them in sandy loam over a 1‐year period. Trenching also increased nitric oxide fluxes, which were greater in the sandy loam than in the clay. We used trenching (clay only) and a mass balance approach to estimate the root contribution to soil respiration. In clay soil root respiration was 264–380 g C m^?2 yr^?1, accounting for 24% to 35% of the total soil CO₂ efflux. Estimates were similar using both approaches. In sandy loam, root respiration rates were slightly higher and more variable (521±206 g C m² yr^?1) and contributed 35% of the total soil respiration. Our results show that soil heterotrophs strongly dominate soil respiration in this forest, regardless of soil texture. Our results also suggest that fine root mortality and decomposition associated with disturbance and land‐use change can contribute significantly to increased rates of nitrogen trace gas emissions.     

Long-term growth at elevated carbon dioxide stimulates methane emission in tropical paddy rice

Recent anthropogenic emissions of key atmospheric trace gases (e.g. CO₂ and CH₄) which absorb infra-red radiation may lead to an increase in mean surface temperatures and potential changes in climate. Although sources of each gas have been evaluated independently, little attention has focused on potential interactions between gases which could influence emission rates. In the current experiment, the effect of enhanced CO₂ (300 μL L^–1 above ambient) and/or air temperature (4 °C above ambient) on methane generation and emission were determined for the irrigated tropical paddy rice system over 3 consecutive field seasons (1995 wet and dry seasons 1996 dry season). For all three seasons, elevated CO₂ concentration resulted in a significant increase in dissolved soil methane relative to the ambient control. Consistent with the observed increases in soil methane, measurements of methane flux per unit surface area during the 1995 wet and 1996 dry seasons also showed a significant increase at elevated carbon dioxide concentration relative to the ambient CO₂ condition (+49 and 60% for each season, respectively). Growth of rice at both increasing CO₂ concentration and air temperature did not result in additional stimulation of either dissolved or emitted methane compared to growth at elevated CO₂ alone. The observed increase in methane emissions were associated with a large, consistent, CO₂-induced stimulation of root growth. Results from this experiment suggest that as atmospheric CO₂ concentration increases, methane emissions from tropical paddy rice could increase above current projections.     

Soil oxygen availability and biogeochemistry along rainfall and topographic gradients in upland wet tropical forest soils

We measured soil oxygen concentrations at 10 and 35 cm depths and indices of biogeochemical cycling in upland forest soils along a rainfall and elevation gradient (3500–5000 mm y^–1; 350–1050 masl) and along topographic gradients (ridge to valley, 150 m) in the Luquillo Experimental Forest, Puerto Rico. Along the rainfall gradient, soil O₂ availability decreased significantly with increasing annual rainfall, and reached very low levels (<3%) in individual chambers for up to 25 consecutive weeks over 82 weeks of study. Along localized topographic gradients, soil O₂ concentrations were variable and decreased significantly from ridges to valleys. In the valleys, up to 35% of the observations at 10–35 cm depth were <3% soil O₂. Cross correlation analyses showed that soil O₂ concentrations were significantly positively correlated along the topographic gradient, and were sensitive to rainfall and hydrologic output. Soil O₂ concentrations in valley soils were correlated with rainfall from the previous day, while ridge sites were correlated with cumulative rainfall inputs over 4 weeks. Soils at the wettest point along the rainfall gradient had very high soil methane concentrations (3–24%) indicating a strong influence of anaerobic processes. We measured net methane emission to the atmosphere at the wettest sites of the rainfall gradient, and in the valleys along topographic gradients. Other measures of biogeochemical function such as soil organic matter content and P availability were sensitive to chronic O₂ depletion along the rainfall gradient, but less sensitive to the variable soil O₂ environment exhibited at lower elevations along topographic gradients.     

Methane uptake rates in Japanese forest soils depend on the oxidation ability of topsoil, with a new estimate for global methane uptake in temperate forest

To clarify the reason for the higher CH₄ uptake rate in Japanese forest soils, twenty-seven sites were established for CH₄ flux measurement. The first order rate constant for CH₄ uptake was also determined using soil core incubation at 14 sites. The CH₄ uptake rate had a seasonal fluctuation, high in summer and low in winter, and the rate correlated with soil temperature at 17 sites. The annual CH₄ uptake rates ranged from 2.7 to 24.8 kg CH₄ ha⁻¹ y⁻¹ (the average of these rates was 9.7 or 10.9 kg CH₄ ha⁻¹ y⁻¹, depending on method of calculation), which is somewhat higher than the uptake rates reported in previous literature. The averaged CH₄ uptake rate correlated closely with the CH₄ oxidation rate of the topsoil (0–5 cm) in the study sites. The CH₄ oxidation constant of the topsoil was explained by a multiple regression model using total pore volume of the soil, nitrate content, and C/N ratio (p < 0.05, R ² = 0.684). This result and comparison with literature data suggest that the high CH₄ uptake rate in Japanese forest soils depends on the high porosity probably due to volcanic ash parent materials. According to our review of the literature, the CH₄ uptake rate in temperate forests in Europe is significantly different from that in Asia and North America. A new global CH₄ uptake rate in temperate forests was estimated to be 5.4 Tg y⁻¹ (1 SE is 1.1 Tg y⁻¹) on a continental basis.     

Effect of soil characteristics on sequential reduction and methane production in sixteen rice paddy soils from China, the Philippines, and Italy

The potentials for sequential reduction of inorganic electron acceptors and production of methane have been examined in sixteen rice soils obtained from China, the Philippines, and Italy. Methane, CO₂, Fe(II), NO ₃ ^- , SO ₄ ² , pH, E_h, H₂ and acetate were monitored during anaerobic incubation at 30 °C for 120 days. Based on the accumulation patterns of CO₂ and CH₄, the reduction process was divided into three distinct phases: (1) an initial reduction phase during which most of the inorganic electron acceptors were depleted and CO₂ production was at its maximum, (2) a methanogenic phase during which CH₄ production was initiated and reached its highest rate, and (3) a steady state phase with constant production rates of CH₄ and CO₂. The reduction phases lasted for 19 to 75 days with maximum CO₂ production of 2.3 to 10.9 mol d^-1 g^-1 dry soil. Methane production started after 2 to 87 days and became constant after about 38--68 days (one soil >120 days). The maximum CH₄ production rates ranged between 0.01 and 3.08 mol d^-1 g^-1. During steady state the constant CH₄ and CO₂ production rates varied from 0.07 to 0.30 mol d^-1 g^-1 and 0.02 and 0.28 mol d^-1 g^-1, respectively. Within the 120 d of anaerobic incubation only 6--17% of the total soil organic carbon was released into the gas phase. The gaseous carbon released consisted of 61--100% CO₂, <0.1--35% CH₄, and <5% nonmethane hydrocarbons. Associated with the reduction of available Fe(III) most of the CO₂ was produced during the reduction phase. The electron transfer was balanced between total CO₂ produced and both CH₄ formed and Fe(III), sulfate and nitrate reduced. Maximum CH₄ production rate (r = 0.891) and total CH₄ produced (r = 0.775) correlated best with the ratio of soil nitrogen to electron acceptors. Total nitrogen content was a better indicator for available organic substrates than the total organic carbon content. The redox potential was not a good predictor of potential CH₄ production. These observations indicate that the availability of degradable organic substrates mainly controls the CH₄ production in the absence of inorganic electron acceptors.     

Isotopic insights into methane production,oxidation, and emissions in Arctic polygon tundra

Arctic wetlands are currently net sources of atmospheric CH₄. Due to their complex biogeochemical controls and high spatial and temporal variability, current net CH₄ emissions and gross CH₄ processes have been difficult to quantify, and their predicted responses to climate change remain uncertain. We investigated CH₄ production, oxidation, and surface emissions in Arctic polygon tundra, across a wet‐to‐dry permafrost degradation gradient from low‐centered (intact) to flat‐ and high‐centered (degraded) polygons. From 3 microtopographic positions (polygon centers, rims, and troughs) along the permafrost degradation gradient, we measured surface CH₄ and CO₂ fluxes, concentrations and stable isotope compositions of CH₄ and DIC at three depths in the soil, and soil moisture and temperature. More degraded sites had lower CH₄ emissions, a different primary methanogenic pathway, and greater CH₄ oxidation than did intact permafrost sites, to a greater degree than soil moisture or temperature could explain. Surface CH₄ flux decreased from 64 nmol m^?2 s^?1 in intact polygons to 7 nmol m^?2 s^?1 in degraded polygons, and stable isotope signatures of CH₄ and DIC showed that acetate cleavage dominated CH₄ production in low‐centered polygons, while CO₂ reduction was the primary pathway in degraded polygons. We see evidence that differences in water flow and vegetation between intact and degraded polygons contributed to these observations. In contrast to many previous studies, these findings document a mechanism whereby permafrost degradation can lead to local decreases in tundra CH₄ emissions.     

Climate change effects on carbon and nitrogen mineralization in peatlands through changes in soil quality

Climate change will directly affect carbon and nitrogen mineralization through changes in temperature and soil moisture, but it may also indirectly affect mineralization rates through changes in soil quality. We used an experimental mesocosm system to examine the effects of 6‐year manipulations of infrared loading (warming) and water‐table level on the potential anaerobic nitrogen and carbon (as carbon dioxide (CO₂) and methane (CH₄) production) mineralization potentials of bog and fen peat over 11 weeks under uniform anaerobic conditions. To investigate the response of the dominant methanogenic pathways, we also analyzed the stable isotope composition of CH₄ produced in the samples. Bog peat from the highest water‐table treatment produced more CO₂ than bog peat from drier mesocosms. Fen peat from the highest water‐table treatment produced the most CH₄. Cumulative nitrogen mineralization was lowest in bog peat from the warmest treatment and lowest in the fen peat from the highest water‐table treatment. As all samples were incubated under constant conditions, observed differences in mineralization patterns reflect changes in soil quality in response to climate treatments. The largest treatment effects on carbon mineralization as CO₂ occurred early in the incubations and were ameliorated over time, suggesting that the climate treatments changed the size and/or quality of a small labile carbon pool. CH₄ from the fen peat appeared to be predominately from the acetoclastic pathway, while in the bog peat a strong CH₄ oxidation signal was present despite the anaerobic conditions of our incubations. There was no evidence that changes in soil quality have lead to differences in the dominant methanogenic pathways in these systems. Overall, our results suggest that even relatively short‐term changes in climate can alter the quality of peat in bogs and fens, which could alter the response of peatland carbon and nitrogen mineralization to future climate change.     

Impact of forest plantation on methane emissions from tropical peatland

Tropical peatlands are a known source of methane (CH₄) to the atmosphere, but their contribution to atmospheric CH₄ is poorly constrained. Since the 1980s, extensive areas of the peatlands in Southeast Asia have experienced land‐cover change to smallholder agriculture and forest plantations. This land‐cover change generally involves lowering of groundwater level (GWL), as well as modification of vegetation type, both of which potentially influence CH₄ emissions. We measured CH₄ exchanges at the landscape scale using eddy covariance towers over two land‐cover types in tropical peatland in Sumatra, Indonesia: (a) a natural forest and (b) an Acacia crassicarpa plantation. Annual CH₄ exchanges over the natural forest (9.1 ± 0.9 g CH₄ m^?2 year^?1) were around twice as high as those of the Acacia plantation (4.7 ± 1.5 g CH₄ m^?2 year^?1). Results highlight that tropical peatlands are significant CH₄ sources, and probably have a greater impact on global atmospheric CH₄ concentrations than previously thought. Observations showed a clear diurnal variation in CH₄ exchange over the natural forest where the GWL was higher than 40 cm below the ground surface. The diurnal variation in CH₄ exchanges was strongly correlated with associated changes in the canopy conductance to water vapor, photosynthetic photon flux density, vapor pressure deficit, and air temperature. The absence of a comparable diurnal pattern in CH₄ exchange over the Acacia plantation may be the result of the GWL being consistently below the root zone. Our results, which are among the first eddy covariance CH₄ exchange data reported for any tropical peatland, should help to reduce the uncertainty in the estimation of CH₄ emissions from a globally important ecosystem, provide a more complete estimate of the impact of land‐cover change on tropical peat, and develop science‐based peatland management practices that help to minimize greenhouse gas emissions.     

Soil environmental variables affecting the flux of methane from a range of forest, moorland and agricultural soils

Measurements of the net methane exchange over a range of forest, moorland, and agricultural soils in Scotland were made during the period April to June 1994 and 1995. Fluxes of CH₄ ranged from oxidation –12.3 to an emission of 6.8 ng m^–2 s^–1. The balance between CH₄ oxidation and emission depended on the physical conditions of the soil, primarily soil moisture. The largest oxidation rates were found in the mineral forest soils, and CH₄ emission was observed in several peat soils. The smallest oxidation rate was observed in an agricultural soil. The relationship between CH₄ flux and soil moisture observed in peats (Flux_{CH 4} = 0.023 × %H₂O (dry weight) – 7.44, p > 0.05) was such that CH₄ oxidation was observed at soil moistures less than 325%( ± 80%). CH₄ emission was found at soil moistures exceeding this value. A large range of CH₄ oxidation rates were observed over a small soil moisture range in the mineral soils. CH₄ oxidation in mineral soils was negatively correlated with soil bulk density (Flux_{CH 4} = –37.35 × bulk density (g cm^–3) + 48.83, p > 0.05). Increased nitrogen loading of the soil due to N fixation, atmospheric deposition of N, and fertilisation, were consistently associated with decreases in the soil sink for CH₄, typically in the range 50 to 80%, on a range of soil types and land uses.     

Toward an integrated monitoring framework to assess the effects of tropical forest degradation and recovery on carbon stocks and biodiversity

Tropical forests harbor a significant portion of global biodiversity and are a critical component of the climate system. Reducing deforestation and forest degradation contributes to global climate‐change mitigation efforts, yet emissions and removals from forest dynamics are still poorly quantified. We reviewed the main challenges to estimate changes in carbon stocks and biodiversity due to degradation and recovery of tropical forests, focusing on three main areas: (1) the combination of field surveys and remote sensing; (2) evaluation of biodiversity and carbon values under a unified strategy; and (3) research efforts needed to understand and quantify forest degradation and recovery. The improvement of models and estimates of changes of forest carbon can foster process‐oriented monitoring of forest dynamics, including different variables and using spatially explicit algorithms that account for regional and local differences, such as variation in climate, soil, nutrient content, topography, biodiversity, disturbance history, recovery pathways, and socioeconomic factors. Generating the data for these models requires affordable large‐scale remote‐sensing tools associated with a robust network of field plots that can generate spatially explicit information on a range of variables through time. By combining ecosystem models, multiscale remote sensing, and networks of field plots, we will be able to evaluate forest degradation and recovery and their interactions with biodiversity and carbon cycling. Improving monitoring strategies will allow a better understanding of the role of forest dynamics in climate‐change mitigation, adaptation, and carbon cycle feedbacks, thereby reducing uncertainties in models of the key processes in the carbon cycle, including their impacts on biodiversity, which are fundamental to support forest governance policies, such as Reducing Emissions from Deforestation and Forest Degradation.     

Methane emissions from rice microcosms: The balance of production, accumulation and oxidation

In rice microcosms (Oryza sativa, var. Roma, type japonica),CH₄ emission, CH₄ production, CH₄oxidation and CH₄ accumulation were measured over an entirevegetation period. Diffusive CH₄ emission was measured inclosed chambers, CH₄ production was measured in soil samples,CH₄ oxidation was determined from the difference between oxicand anoxic emissions, and CH₄ accumulation was measured byanalysis of porewater and gas bubbles. The sum of diffusiveCH₄ emission, CH₄ oxidation, andCH₄ accumulation was only 60% of the cumulativeCH₄ production. The two values diverged during the first 50days (vegetative phase) and then again during the last 50 days (latereproductive phase and senescence) of the 150 day vegetation period. Duringthe period of day 50–100 (early reproductive phase/flowering), theprocesses were balanced. Most likely, gas bubbles and diffusion limitationare responsible for the divergence in the early and late phases. The effectof rice on CH₄ production rates and CH₄concentrations was studied by measuring these processes also in unplantedmicrocosms. Presence of rice plants lowered the CH₄concentrations, but had no net effect on the CH₄ productionrates.