用于蜜蜂和熊蜂肠道微生物分类的细菌16S rRNA数据库优化

蜜蜂和熊蜂是重要的传粉昆虫, 对农业生产及生态平衡的维持具有重要作用。近年来, 研究发现蜜蜂及熊蜂肠道内含有大量微生物, 其组成简单、特异。正常的肠道微生物群落对蜜蜂的生长、激素调节、致病菌抵抗等具有重要作用。随着高通量测序的发展, 研究者们也可快速获得传粉蜂肠道微生物组成, 这给生物多样性和物种保护及蜂类健康等的研究带来了便捷。但是由于蜜蜂和熊蜂肠道微生物群落均由特殊菌种组成, 目前的细菌16S rRNA数据库无法对其进行准确的分类, 并且部分东方蜜蜂(Apis cerana)特有的肠道微生物菌种缺乏16S rRNA序列信息。本文从来源于5个不同省份的东方蜜蜂肠道中分离得到在东方蜜蜂中普遍含有的Apibacter菌属纯菌, 获取其全长16S rRNA序列, 并对目前蜜蜂和熊蜂肠道的5个核心菌种的分类进行了综述, 对其分类和命名进行了修正。根据蜜蜂肠道微生物的明确分类, 在目前常用的SILVA细菌分类数据库基础之上对其进行了命名及分类优化, 并加入东方蜜蜂中普遍含有的Apibacter序列, 从而获得了优化数据库Bee Gut Microbiota-Database (BGM-Db)。通过1组东方蜜峰及1组西方蜜蜂(Apis mellifera)的肠道菌群高通量测序结果, 分析不同数据库的表现, 我们发现相比于SILVA和Ribosomal Database Project (RDP), BGM-Db对蜜蜂肠道16S rRNA高通量测序短序列实现了菌种级别的分类, 分辨率更高。     

基于COⅠ基因序列的蜜蜂属系统发育分析及其舞蹈和筑巢行为进化分析

【目的】分析蜜蜂属Apis的系统发育关系,并在此基础上探讨蜜蜂属舞蹈方向、舞蹈声音、营巢环境、巢脾结构的祖先状态和演变过程。【方法】PCR扩增并测定中国分布的蜜蜂属内东方蜜蜂A. cerana、西方蜜蜂A. mellifera、大蜜蜂A. dorsata、黑大蜜蜂A. laboriosa、小蜜蜂A. florea和黑小蜜蜂A. andreniformis的线粒体COⅠ基因序列,并从NCBI数据库中下载分布于其他国家或地区的上述6种蜜蜂以及绿努蜂A. nulunsis、苏拉威西蜂A. nigrocinta、沙巴蜂A. koschevnikovi、炳式大蜜蜂A. dorsata binghami的COⅠ同源序列。分别利用最大简约法(MP)、最大似然法(ML)和贝叶斯分析(BI)依据这些序列数据构建蜜蜂属系统发育关系。对蜜蜂属上述种的舞蹈语言和筑巢行为进行编码并作为性状特征标记到系统发育树中,利用简约法对祖先状态进行追溯。【结果】系统发育分析结果表明,蜜蜂属可划分为3大类群,即穴居蜜蜂类群(东方蜜蜂、西方蜜蜂、苏拉威西蜂、绿努蜂、沙巴蜂)、大蜜蜂类群(大蜜蜂、黑大蜜蜂)和小蜜蜂类群(小蜜蜂、黑小蜜蜂);小蜜蜂类群更加接近于祖型,大蜜蜂类群和穴居蜜蜂类群是两支单系;炳式大蜜蜂是独立于大蜜蜂和黑大蜜蜂的蜂种,且与黑大蜜蜂的亲缘关系更近。祖先状态重建结果显示：蜜蜂属祖先在露天环境下筑造垂直的单脾,且在传播食物或巢址信息时跳水平方向的无声摆尾舞,有嗡嗡声的舞蹈及筑造复脾是后来形成的。【结论】COⅠ基因可作为分子标记用于分析蜜蜂属的舞蹈和筑巢行为的祖先状态及进化过程;蜜蜂筑造复脾、跳有嗡嗡声的舞蹈是后期的适应性进化行为。     

Competition between honey bees and wild bees and the role of nesting resources in a nature reserve

The European honey bee exploits floral resources efficiently and may therefore compete with solitary wild bees. Hence, conservationists and bee keepers are debating about the consequences of beekeeping for the conservation of wild bees in nature reserves. We observed flower-visiting bees on flowers of Calluna vulgaris in sites differing in the distance to the next honey-bee hive and in sites with hives present and absent in the Lüneburger Heath, Germany. Additionally, we counted wild bee ground nests in sites that differ in their distance to the next hive and wild bee stem nests and stem-nesting bee species in sites with hives present and absent. We did not observe fewer honey bees or higher wild bee flower visits in sites with different distances to the next hive (up to 1,229 m). However, wild bees visited fewer flowers and honey bee visits increased in sites containing honey-bee hives and in sites containing honey-bee hives we found fewer stem-nesting bee species. The reproductive success, measured as number of nests, was not affected by distance to honey-bee hives or their presence but by availability and characteristics of nesting resources. Our results suggest that beekeeping in the Lüneburg Heath can affect the conservation of stem-nesting bee species richness but not the overall reproduction either of stem-nesting or of ground-nesting bees. Future experiments need control sites with larger distances than 500 m to hives. Until more information is available, conservation efforts should forgo to enhance honey bee stocking rates but enhance the availability of nesting resources.     

Ergosterol peroxides as phospholipase A2 inhibitors from the fungus Lactarius hatsudake

Four ergosterol derivatives (1–4) have been isolated for the first time from the fruiting bodies of a basidiomycete fungus, Lactarius hatsudake, through activity-guided fractionation. Their structures were determined, using spectroscopic analysis, as: (22E,24R)-ergosta-5,7,22-dien-3β-ol (ergosterol, 1); 5,8-epidioxy-(22E,24R)-ergosta-6,22-dien-3β-ol (ergosterol peroxide, 2); 5,8-epidioxy-(24S)-ergosta-6-en-3β-ol (3); and (22E,24R)-ergosta-7,22-dien-3β,5,6β-triol (cerevisterol, 4). Compounds 2 and 3 showed selective inhibitory activity against Crotalus adamenteus venom phospholipase A₂ (PLA₂) enzyme, but not against Apis mellifcra bee venom PLA₂. The antiphospholipase A₂ activity of compounds 2 and 3 are reported here for the first time.     

The BAH domain, polybromo and the RSC chromatin remodelling complex

We isolated Rivulus marmoratus mitochondrial DNA by long-polymerase chain reaction with conserved primers, and sequenced it with 36 sets of internal conserved primers, which were designed from the extensive sequence similarities of mitochondrial DNA from several fish species. The R. marmoratus mitochondrial DNA has 17,329 bp with a conserved structural organization compared to those of other fish. Rivulus marmoratus mitochondrial DNA also has two nearly identical control regions. The basic characteristics of the R. marmoratus mitochondrial genome are discussed.     

Development of Beauveria bassiana dry formulation for vectoring by honey bees Apis mellifera (Hymenoptera: Apidae) to the flowers of crops for pest control

Using bee pollinators as a means for the dissemination of microbial control agents, such as Beauveria bassiana, against insect pests of agricultural crops is a novel and interesting approach to biological control. In four laboratory trials, one in Canada and three in Jordan, factors affecting the acquisition of B. bassiana by honey bees were evaluated using hive-mounted inoculum dispensers. The numbers of conidia carried by bees emerging from the dispensers differed according to the type of carrier used. Bees that passed through corn flour acquired more inoculum than did those that walked through wheat flour, durum semolina, corn meal, potato starch, potato flakes, oat flour or barley flour. The numbers of conidia acquired by the bees increased with decreasing particle size and moisture content of the carrier, and with increasing density of B. bassiana conidia in the formulation. Time required for a bee to pass through the dispenser did not significantly affect the acquisition of conidia. This study indicated that honeybees (Apis mellifera carnica) have a great potential for vectoring B. bassiana in crop systems. It also opens more avenues for studies on bee delivery of other microbial biological control agents.     

Construction and characterisation of a BAC library from Arabidopsis halleri: Evaluation of physical mapping based on conserved synteny with Arabidopsis thaliana

We constructed and characterized the first large-insert DNA BAC library for Arabidopsis halleri, a close relative of Arabidopsis thaliana. Double size selection of high molecular weight DNA was performed to increase the average insert size. The BAC library consists of 6128 clones of which 87% have an insert size above 125 kb. Organellar DNA contamination is estimated to 1.4%. The coverage of the library is equivalent to 4.5 times the haploid genome (250 Mb), indicating the library is suitable for almost any application. We explored the possibility of generating a physical map of A. halleri using the high conserved synteny existing between this species and A. thaliana. A set of unigenes separated by 50 kb in a 850 kb region of A. thaliana chromosome II was used to probe the library. The A. halleri BAC clones isolated with these probes were grouped into two contigs. Analysis of BAC-end sequences revealed that the two A. halleri genomic contigs were highly colinear with the A. thaliana genome. Therefore, the exploitation of the conserved synteny existing between the two species will greatly facilitate the construction of a raw full physical map of A. halleri.     

信息素介导的西方蜜蜂与狄斯瓦螨互作研究进展

狄斯瓦螨是一种严重危害西方蜜蜂的体外寄生螨,是世界养蜂业的最大威胁.人们广泛采用化学方法防治狄斯瓦螨,但易引起狄斯瓦螨的抗药性、蜜蜂中毒和蜂产品药物残留等问题.为此,人们尝试了多种蜂螨绿色防控技术.其中利用蜜蜂信息素防治狄斯瓦螨是一个重要的研究方向.研究表明,狄斯瓦螨能利用蜜蜂信息素识别处于不同发育阶段的寄主,并对特定时期的寄主表现出高度的选择性.近年来,多种能作用于狄斯瓦螨的蜜蜂信息素相继被报道.这些信息素包括成蜂、蛹和幼虫信息素.有的信息素对狄斯瓦螨表现出驱避作用,有的则表现出引诱作用.本文对这些信息素的种类、主要组成成分、对狄斯瓦螨的作用等进行了综述,旨在为今后的研究与应用提供参考.     

Pteropsin: a vertebrate-like non-visual opsin expressed in the honey bee brain

Insects have excellent color vision based on the expression of different opsins in specific sets of photoreceptive cells. Opsins are members of the rhodopsin superfamily of G-protein coupled receptors, and are transmembrane proteins found coupled to light-sensitive chromophores in animal photoreceptors. Diversification of opsins during animal evolution provided the basis for the development of wavelength-specific behavior and color vision, but with the exception of the recently discovered non-visual melanopsins, vertebrate and invertebrate opsins have generally been viewed as representing distinct lineages. We report a novel lineage of insect opsins, designated pteropsins. On the basis of sequence analysis and intron location, pteropsins are more closely related to vertebrate visual opsins than to invertebrate opsins. Of note is that the pteropsins are missing entirely from the genome of drosophilid flies. In situ hybridization studies of the honey bee, Apis mellifera, revealed that pteropsin is expressed in the brain of this species and not in either the simple or compound eyes. It was also possible, on the basis of in situ hybridization studies, to assign different long wavelength opsins to the compound eyes (AmLop1) and ocelli (AmLop2). Insect pteropsin might be orthologous to a ciliary opsin recently described from the annelid Platynereis, and therefore represents the presence of this vertebrate-like light-detecting system in insects.     

Variations in chemical mimicry by the ectoparasitic mite Varroa jacobsoni according to the developmental stage of the host honey-bee Apis mellifera

The ectoparasitic mite Varroa jacobsoni poses a major threat to the survival of European honey-bee populations. Development of effective control methods is therefore much needed. Study of interspecific chemical communication between the parasite and host is a particularly promising avenue of research. Previous study has shown that the cuticular hydrocarbons of the parasite mite Varroa jacobsoni are qualitatively identical to those of its honey-bee host Apis mellifera (Nation J.L., Sanford M.T., Milne K., 1992. Cuticular hydrocarbons from Varroa jacobsoni. Experimental and Applied Acarology 16, 331-344). The purpose of the present study was to compare the cuticular hydrocarbon patterns of the two species at different stages of bee development. Cuticular components were identified by gas chromatography/mass spectrometry. The proportion of each component was calculated at three stages of bee development (larvae, pupa, emerging bee). The degree of chemical mimicry between the parasite and host was evaluated by multivariate analyses using the resulting proportions for each category of individuals. There were four main findings. The first was that the proportions of some components are different at the larval, pupal and imago stage of bee development. Second, Varroa profiles vary depending on the developmental stage of the host. Third, the cuticular profile of adult mites is more similar to that of the stage of the host than that of later and/or earlier stages except for parasites collected from emerging adult bees. Fourth, the degree of mimicry by Varroa is greater during larval and pupal stages than during the emerging adult bee stages. The role of chemical mimicry - although it is not perfect - in enabling parasites to infest bee colonies by the parasite is discussed.     

Ascosphaera subglobosa, a new spore cyst fungus from North America associated with the solitary bee Megachile rotundata

Ascosphaera subglobosa (Eurotiomycetes: Onygenales) is newly described from the pollen provisions and nesting material of the solitary leaf-cutting bee Megachile rotundata in Canada and the western United States. This new species, related to A. atra and A. duoformis, is distinguished from other Ascosphaera species by its globose to subglobose ascospores, evanescent spore balls and unique nuclear ribosomal DNA sequences (ITS and LSU).     

Phylogenetic relationships and the maternal donor of Roegneria (Triticeae: Poaceae) based on three nuclear DNA sequences (ITS,Acc1, and Pgk1) and one chloroplast region (trnL-F)

Roegneria is a polyploid perennial genus in the tribe Triticeae. Some species of Roegneria are morphologically similar to genus Elymus and have been classified in Elymus. To investigate the delimitation and phylogenetic relationships of Roegneria, nuclear (ITS, Acc1, and Pgk1) and chloroplast (trnL–trnF) DNA regions were sequenced for 38 allopolyploid species and 32 diploid species of Triticeae. Phylogenetic analyses of nuclear DNA revealed that all Roegneria species were included in the St and Y genome clades, and that the Y genome was closely related to the V and Xp genomes. The chloroplast DNA dataset showed that Roegneria species were grouped with Pseudoroegneria species. The Pseudoroegneria species from the Middle East (P. libanotica and P. tauri) and Central Asia (P. strigosa) were more closely related to Roegneria species. The results suggested that: (i) the species containing the St and Y genomes should be segregated from Elymus and treated as a distinct genus, Roegneria, based on the genomic constitution; (ii) P. libanotica, P. tauri, and/or P. strigosa potentially served as the maternal donor of the St genome in Roegneria; (iii) The Y genome of Roegneria originated from a diploid Y genome species, and the V and Xp genomes may have contributed to Y genome formation; (iv) among Roegneria species of previously uncertain genomic constitution, R. seriotina was tetraploid and possessed the StY genomes, E. calcicolus was hexaploid with the StYH genomic constitution and should be classified in Campeiostachys, R. glaucifolia possessed the StStY genomes, and R. tschimganica had the genomic constitution St₁St₂Y.     

Honey bees can disseminate a microbial control agent to more than one inflorescence pest of oilseed rape

Pollen beetles (Meligethes aeneus) and cabbage seed weevils (Ceutorhynchus assimilis) are major pests of oilseed rape (Brassica napus) throughout Europe. In field cage experiments in both winter and spring rape, honey bees (Apis mellifera) effectively transported the entomopathogenic fungus Metarhizium anisopliae to the flowers, causing infection and mortality of both adult and larval pollen beetles, as well as of adult seed weevils. External conidiation was observed on many of the dead pest insects. Although some external conidiation also occurred on dead honey bees, reduction in honey bee colony size during the experiments appeared unrelated to the fungus. The potential of this technique for integration into pest management strategies for the crop, particularly in association with a trap crop, is discussed.     

Systematics of Mukdenia and Oresitrophe (Saxifragaceae): Insights from genome skimming data

Oresitrophe and Mukdenia (Saxifragaceae) are epilithic sister genera used in traditional Chinese medicine. The taxonomy of Mukdenia, especially of M. acanthifolia, has been controversial. To address this, we produced plastid and mitochondrial data using genome skimming for Mukdenia acanthifolia and Mukdenia rossii, including three individuals of each species. We assembled complete plastomes, mitochondrial CDS and nuclear ribosomal ETS/ITS sequences using these data. Comparative analysis shows that the plastomes of Mukdenia and Oresitrophe are relatively conservative in terms of genome size, structure, gene content, RNA editing sites and codon usage. Five plastid regions that represent hotspots of change (trnH-psbA, psbC-trnS, trnM-atpE, petA-psbJ and ccsA-ndhD) are identified within Mukdenia, and six regions (trnH-psbA, petN-psbM, trnM-atpE, rps16-trnQ, ycf1 and ndhF) contain a higher number of species-specific parsimony-informative sites that may serve as potential DNA barcodes for species identification. To infer phylogenetic relationships between Mukdenia and Oresitrophe, we combined our data with published data based on three different datasets. The monophyly of each species (Oresitrophe rupifraga, M. acanthifolia and M. rossii) and the inferred topology ((M. rossii, M. acanthifolia), O. rupifraga) are well supported in trees reconstructed using the complete plastome sequences, but M. acanthifolia and M. rossii did not form a separate clade in the trees based on ETS + ITS data, while the mitochondrial CDS trees are not well-resolved. We found low recovery of genes in the Angiosperms353 target enrichment panel from our unenriched genome skimming data. Hybridization or incomplete lineage sorting may be the cause of discordance between trees reconstructed from organellar and nuclear data. Considering its morphological distinctiveness and our molecular phylogenetic results, we strongly recommend that M. acanthifolia be treated as a distinct species.     

Getting a buzz out of the bee genome

The honey bee Apis mellifera displays the most complex behavior of any insect. This, and its utility to humans, makes it a fascinating object of study for biologists. Such studies are now further enabled by the release of the honey-bee genome sequence.     

The ebb and flow of a fungal genome

Transposable DNA elements have only recently been described in a few species of filamentous fungi, but may be more abundant than previously believed. Several different elements have been isolated from the rice blast pathogen Magnaporthe grisea. The distribution and amplification of these elements suggest a potential role in the evolution of the fungal genome.     

风筝果镜像花的雌雄异位变化及传粉生态型的形成

亚洲特有植物风筝果(Hiptage benghalensis)镜像花(mirror-image flowers)的雌雄异位变化极大, 柱头与可育花药的空间距离在海南岛与云南西双版纳种群仅有2-4 mm, 而在贵州及云南东南部种群可达10-12 mm。为验证 “镜像花雌雄异位的变化是各个地理种群受到传粉昆虫体型大小选择的结果”假说, 本文开展了传粉生态学与分子生物学研究, 探讨风筝果不同地理种群的雌雄异位变化是否与当地传粉者体型相关, 是否有着遗传基础, 以及是否形成了“传粉生态型”(pollination ecotype)。结果表明, 雌雄异位程度大的贵州种群和云南东南部种群, 其传粉者也是体型较大的木蜂(Xylocopa nasalis)和熊蜂一种(Bombus sp.); 雌雄异位程度小的海南岛种群和云南西双版纳种群的传粉者则是体型较小的大蜜蜂(Apis dorsata)、西方蜜蜂(A. mellifera)。除了雌雄异位的明显分化(F = 53.69, P < 0.01)之外, 花柱长度也在这两类种群之间差异显著(F = 12.5, P < 0.05), 与传粉昆虫身体长度密切相关。通过叶绿体ycf1b、rbcL和细胞核ITS 3个DNA片段的序列分析, 由大型蜂传粉的雌雄异位程度较大的3个种群(贵州和云南东南部种群)遗传关系极近, 与小型蜂传粉种群(雌雄异位较小的海南岛种群和云南西双版纳种群)存在明显的遗传分化。这些结果显示, 风筝果不同地理种群的镜像花雌雄异位程度的变化可能是适应局域不同体型大小的传粉昆虫的选择结果, 而且种群间出现了基因流的隔断, 可能与大型蜂、小型蜂传粉的两种生态型有关。镜像花通过雌雄异位的变化适应不同地域的传粉者而形成传粉生态型, 这种传粉生态型及其传粉隔离机制可能是风筝果属物种形成与维持的一个重要原因。     

Arginine kinase is highly expressed in the compound eye of the honey-bee,Apis mellifera

We have cloned and sequenced a 1.68-kb cDNA encoding arginine kinase in the honey-bee, Apis mellifera. The predicted protein shows a high level of identity to known arginine kinases in invertebrates and to other proteins belonging to the conserved family of ATP: guanidino phospho-transferases. The pattern of expression of arginine kinase has been investigated for the first time in various tissues including the brain, antennae and compound eye. Our results show that three isoforms of arginine kinase, transcribed from a single gene, are expressed in a characteristic pattern in major tissues of the honey-bee. Arginine kinase mRNA is relatively abundant in the central nervous system and in the antennae. However, the highest level of expression, that is at least two to three times higher than in the brain, is found in the compound eye of the bee. By contrast, the levels of mRNAs encoding another metabolically important enzyme, a-glycerolphosphate dehydrogenase (a-GPDH), are low in the eye. These findings suggest that arginine kinase is an important component of the energy releasing mechanism in the visual system that has high and fluctuating energy demands. Furthermore, our results support the role of phosphagen kinases in energy transport in polarised cells and are consistent with the role of arginine kinase as an energy shuttle that delivers ATP generated by mitochondria to high energy-requiring processes, such as massive membrane turnover and pigment regeneration in the retina.