Biogeography of Heterotrophic Flagellate Populations Indicates the Presence of Generalist and Specialist Taxa in the Arctic Ocean

Heterotrophic marine flagellates (HF) are ubiquitous in the world''s oceans and represented in nearly all branches of the domain Eukaryota. However, the factors determining distributions of major taxonomic groups are poorly known. The Arctic Ocean is a good model environment for examining the distribution of functionally similar but phylogenetically diverse HF because the physical oceanography and annual ice cycles result in distinct environments that could select for microbial communities or favor specific taxa. We reanalyzed new and previously published high-throughput sequencing data from multiple studies in the Arctic Ocean to identify broad patterns in the distribution of individual taxa. HF accounted for fewer than 2% to over one-half of the reads from the water column and for up to 60% of reads from ice, which was dominated by Cryothecomonas. In the water column, many HF phylotypes belonging to Telonemia and Picozoa, uncultured marine stramenopiles (MAST), and choanoflagellates were geographically widely distributed. However, for two groups in particular, Telonemia and Cryothecomonas, some species level taxa showed more restricted distributions. For example, several phylotypes of Telonemia favored open waters with lower nutrients such as the Canada Basin and offshore of the Mackenzie Shelf. In summary, we found that while some Arctic HF were successful over a range of conditions, others could be specialists that occur under particular conditions. We conclude that tracking species level diversity in HF not only is feasible but also provides a potential tool for understanding the responses of marine microbial ecosystems to rapidly changing ice regimes.     

The ecological importance of crocodylians: towards evidence‐based justification for their conservation

Large‐bodied predators are well represented among the world's threatened and endangered species. A significant body of literature shows that in terrestrial and marine ecosystems large predators can play important roles in ecosystem structure and functioning. By contrast, the ecological roles and importance of large predators within freshwater ecosystems are poorly understood, constraining the design and implementation of optimal conservation strategies for freshwater ecosystems. Conservationists and environmentalists frequently promulgate ecological roles that crocodylians are assumed to fulfil, but often with limited evidence supporting those claims. Here, we review the available information on the ecological importance of crocodylians, a widely distributed group of predominantly freshwater‐dwelling, large‐bodied predators. We synthesise information regarding the role of crocodylians under five criteria within the context of modern ecological concepts: as indicators of ecological health, as ecosystem engineers, apex predators, keystone species, and as contributors to nutrient and energy translocation across ecosystems. Some crocodylians play a role as indicators of ecosystem health, but this is largely untested across the order Crocodylia. By contrast, the role of crocodylian activities in ecosystem engineering is largely anecdotal, and information supporting their assumed role as apex predators is currently limited to only a few species. Whether crocodylians contribute significantly to nutrient and energy translocation through cross‐ecosystem movements is unknown. We conclude that most claims regarding the importance of crocodylians as apex predators, keystone species, ecosystem engineers, and as contributors to nutrient and energy translocation across ecosystems are mostly unsubstantiated speculation, drawn from anecdotal observations made during research carried out primarily for other purposes. There is a paucity of biological research targeted directly at: understanding population dynamics; trophic interactions within their ecological communities; and quantifying the short‐ and long‐term ecological impacts of crocodylian population declines, extirpations, and recoveries. Conservation practices ideally need evidence‐based planning, decision making and justification. Addressing the knowledge gaps identified here will be important for achieving effective conservation of crocodylians.     

Coalescent Modelling Suggests Recent Secondary-Contact of Cryptic Penguin Species

Molecular genetic analyses present powerful tools for elucidating demographic and biogeographic histories of taxa. Here we present genetic evidence showing a dynamic history for two cryptic lineages within Eudyptula, the world''s smallest penguin. Specifically, we use a suite of genetic markers to reveal that two congeneric taxa (''Australia'' and ''New Zealand'') co-occur in southern New Zealand, with only low levels of hybridization. Coalescent modelling suggests that the Australian little penguin only recently expanded into southern New Zealand. Analyses conducted under time-dependent molecular evolutionary rates lend support to the hypothesis of recent anthropogenic turnover, consistent with shifts detected in several other New Zealand coastal vertebrate taxa. This apparent turnover event highlights the dynamic nature of the region’s coastal ecosystem.     

Linking Water Quality and Quantity in Environmental Flow Assessment in Deteriorated Ecosystems: A Food Web View

Most rivers worldwide are highly regulated by anthropogenic activities through flow regulation and water pollution. Environmental flow regulation is used to reduce the effects of anthropogenic activities on aquatic ecosystems. Formulating flow alteration–ecological response relationships is a key factor in environmental flow assessment. Traditional environmental flow models are characterized by natural relationships between flow regimes and ecosystem factors. However, food webs are often altered from natural states, which disturb environmental flow assessment in such ecosystems. In ecosystems deteriorated by heavy anthropogenic activities, the effects of environmental flow regulation on species are difficult to assess with current modeling approaches. Environmental flow management compels the development of tools that link flow regimes and food webs in an ecosystem. Food web approaches are more suitable for the task because they are more adaptive for disordered multiple species in a food web deteriorated by anthropogenic activities. This paper presents a global method of environmental flow assessment in deteriorated aquatic ecosystems. Linkages between flow regimes and food web dynamics are modeled by incorporating multiple species into an ecosystem to explore ecosystem-based environmental flow management. The approach allows scientists and water resources managers to analyze environmental flows in deteriorated ecosystems in an ecosystem-based way.     

Spatiotemporal maintenance of flora in the Himalaya biodiversity hotspot: Current knowledge and future perspectives

Mountain ecosystems support a significant one‐third of all terrestrial biodiversity, but our understanding of the spatiotemporal maintenance of this high biodiversity remains poor, or at best controversial. The Himalaya hosts a complex mountain ecosystem with high topographic and climatic heterogeneity and harbors one of the world''s richest floras. The high species endemism, together with increasing anthropogenic threats, has qualified the Himalaya as one of the most significant global biodiversity hotspots. The topographic and climatic complexity of the Himalaya makes it an ideal natural laboratory for studying the mechanisms of floral exchange, diversification, and spatiotemporal distributions. Here, we review literature pertaining to the Himalaya in order to generate a concise synthesis of the origin, distribution, and climate change responses of the Himalayan flora. We found that the Himalaya supports a rich biodiversity and that the Hengduan Mountains supplied the majority of the Himalayan floral elements, which subsequently diversified from the late Miocene onward, to create today''s relatively high endemicity in the Himalaya. Further, we uncover links between this Miocene diversification and the joint effect of geological and climatic upheavals in the Himalaya. There is marked variance regarding species dispersal, elevational gradients, and impact of climate change among plant species in the Himalaya, and our review highlights some of the general trends and recent advances on these aspects. Finally, we provide some recommendations for conservation planning and future research. Our work could be useful in guiding future research in this important ecosystem and will also provide new insights into the maintenance mechanisms underpinning other mountain systems.     

海洋浮游古菌MGII的研究进展

海洋浮游古菌MGⅡ是海洋表层水体中最丰富的古菌类群。自1992年被发现以来,如今依然没有被成功分离纯化。前人基于16S rRNA基因的研究认为MGⅡ可以被分为MGⅡa、MGⅡb和MGⅡc三个亚类。近年来,对大量的宏基因组测序数据的分析表明,MGⅡ在分类学上属于广古菌门热源体纲下的一个目,包含MGⅡa和MGⅡb两个科。以前通过16S rRNA基因高通量测序结果得出的少量MGⅡc,在宏基因组测序的数据中并没有找到,因此最近两年的研究认为MGⅡ主要由MGⅡa和MGⅡb组成。本文综述了海洋浮游古菌MGⅡ的丰度和多样性分布特征、潜在的生态功能、生态关系以及培养等方面的研究进展,比较了MGⅡa和MGⅡb的异同点,并对当前的研究热点和趋势进行了讨论和展望。     

Multiple drivers of decline in the global status of freshwater crayfish (Decapoda: Astacidea)

Rates of biodiversity loss are higher in freshwater ecosystems than in most terrestrial or marine ecosystems, making freshwater conservation a priority. However, prioritization methods are impeded by insufficient knowledge on the distribution and conservation status of freshwater taxa, particularly invertebrates. We evaluated the extinction risk of the world''s 590 freshwater crayfish species using the IUCN Categories and Criteria and found 32% of all species are threatened with extinction. The level of extinction risk differed between families, with proportionally more threatened species in the Parastacidae and Astacidae than in the Cambaridae. Four described species were Extinct and 21% were assessed as Data Deficient. There was geographical variation in the dominant threats affecting the main centres of crayfish diversity. The majority of threatened US and Mexican species face threats associated with urban development, pollution, damming and water management. Conversely, the majority of Australian threatened species are affected by climate change, harvesting, agriculture and invasive species. Only a small proportion of crayfish are found within the boundaries of protected areas, suggesting that alternative means of long-term protection will be required. Our study highlights many of the significant challenges yet to come for freshwater biodiversity unless conservation planning shifts from a reactive to proactive approach.     

Early detection of ecosystem regime shifts: a multiple method evaluation for management application

Critical transitions between alternative stable states have been shown to occur across an array of complex systems. While our ability to identify abrupt regime shifts in natural ecosystems has improved, detection of potential early-warning signals previous to such shifts is still very limited. Using real monitoring data of a key ecosystem component, we here apply multiple early-warning indicators in order to assess their ability to forewarn a major ecosystem regime shift in the Central Baltic Sea. We show that some indicators and methods can result in clear early-warning signals, while other methods may have limited utility in ecosystem-based management as they show no or weak potential for early-warning. We therefore propose a multiple method approach for early detection of ecosystem regime shifts in monitoring data that may be useful in informing timely management actions in the face of ecosystem change.     

Trophic amplification of climate warming

Ecosystems can alternate suddenly between contrasting persistent states due to internal processes or external drivers. It is important to understand the mechanisms by which these shifts occur, especially in exploited ecosystems. There have been several abrupt marine ecosystem shifts attributed either to fishing, recent climate change or a combination of these two drivers. We show that temperature has been an important driver of the trophodynamics of the North Sea, a heavily fished marine ecosystem, for nearly 50 years and that a recent pronounced change in temperature established a new ecosystem dynamic regime through a series of internal mechanisms. Using an end-to-end ecosystem approach that included primary producers, primary, secondary and tertiary consumers, and detritivores, we found that temperature modified the relationships among species through nonlinearities in the ecosystem involving ecological thresholds and trophic amplifications. Trophic amplification provides an alternative mechanism to positive feedback to drive an ecosystem towards a new dynamic regime, which in this case favours jellyfish in the plankton and decapods and detritivores in the benthos. Although overfishing is often held responsible for marine ecosystem degeneration, temperature can clearly bring about similar effects. Our results are relevant to ecosystem-based fisheries management (EBFM), seen as the way forward to manage exploited marine ecosystems.     

From Rhetoric to Reality: Using Specific Environmental Concerns to Identify Critical Sustainability Issues

Natural resource managers, environmental interest groups, and public agencies are interested in appropriate, identifiable, and measurable indicators of sustainability. At the same time, public agencies, including natural resource management agencies, are attempting to identify research and management priorities that address major environmental concerns at local and broad scales. The Identify the Specifics approach, described here, uses local (ecodistrict or smaller) ecological/biological “experts' ” knowledge to identify and prioritize the local natural resources of concern (commonly species), associated management practices and ecosystems to form a concern matrix. Local ecological/biological concerns form the environmental base of a broader-scale (ecoregion/ecozone) concern matrix. This matrix identifies similarities and differences among local matrices and appropriate components for promotion to broader scales. Scale-specific matrices identify appropriate local, regional, and broader-scale indicators to monitor and assess, and provide public agencies with direction for documenting effects of management and identifying where research is needed. This approach can provide industries, public agencies, environmental interest groups, and governments with ecosystem-based, prioritized information for balancing social, economic, and ecological concerns on public and private lands. Received 22 July 1997; accepted 7 January 1998.     

Illusions and realities of the ecosystem approach to the study and management of marine and oceanic biological resources

The scientific and applied problem of the ecosystem approach to the management of marine biological resources arose during the last quarter of the 20th century as a component of the Rational Nature Use Concept. This occurred mostly because the existing fishery rules and concepts of the optimum yield theory, which were introduced in the practice of fishery regulations, have proven to be insufficiently effective to conserve biological resources and provide stability of the fishery resource base. The ecosystem approach to biological-resource management implies a change of the autecological studies of commercial stock units (populations) and the managerial single-species models for the sustainable-sized management, taking the impacts of the fishery on marine ecosystems into account, as well as those of marine ecosystems on the fishery. At present, the ecosystem-based biological-resource management includes a complex of ecological topics and issues, such as biodiversity conservation, effect of climate changes, sustainability of stocks and communities, interspecies relationships, multi-species fishery, conservation of rare species, protection of especially important water bodies and landscapes, biotope degradation, anti-pollution measures, invasive species, ranching aquaculture, genetic diversity, etc. The main current problem, besides insufficient knowledge of many of these issues, is how to practically integrate such a large number of parameters into the management system. Thus, the complicated and long-term problem of ecosystem management of marine biological resources should be solved step-by-step, following the progress in the technical capabilities and concepts of natural processes. As well, certain better-studied elements of the ecosystem approach should be implemented first in the practice of management, while taking the regional specifics into account.     

Landfast ice: a major driver of reproductive success in a polar seabird

In a fast-changing world, polar ecosystems are threatened by climate variability. Understanding the roles of fine-scale processes, and linear and nonlinear effects of climate factors on the demography of polar species is crucial for anticipating the future state of these fragile ecosystems. While the effects of sea ice on polar marine top predators are increasingly being studied, little is known about the impacts of landfast ice (LFI) on this species community. Based on a unique 39-year time series of satellite imagery and in situ meteorological conditions and on the world''s longest dataset of emperor penguin (Aptenodytes forsteri) breeding parameters, we studied the effects of fine-scale variability of LFI and weather conditions on this species'' reproductive success. We found that longer distances to the LFI edge (i.e. foraging areas) negatively affected the overall breeding success but also the fledging success. Climate window analyses suggested that chick mortality was particularly sensitive to LFI variability between August and November. Snowfall in May also affected hatching success. Given the sensitivity of LFI to storms and changes in wind direction, important future repercussions on the breeding habitat of emperor penguins are to be expected in the context of climate change.     

Ecological Risk Assessment of China's Freshwater Ecosystems Applying the Relative Risk Model: Toward an Ecosystem-Based Water Management in China

The relative risk model (RRM) was applied to evaluate the ecological risk characterization of the freshwater ecosystems in China, from both overall and region-specific levels. Ten large-scale river basins (further broken into 15 risk regions) in China were chosen as the study objects; 10 sources, two habitats, and seven endpoints were identified as risk components. The results reveal the status of ecosystem conditions, key ecological risk issues, and the spatial heterogeneity of the freshwater ecosystems in China. The policy implications for the ecosystem-based water management contained in the results are discussed. The results obtained in this article provide a deeper understanding of the ecological risk characterization of the freshwater ecosystems in China, and aid in promoting the applications of the RRM as the tool for ecosystem-based water management.     

Parasites: Small Players with Crucial Roles in the Ecological Theater

Effective management of our natural resources requires an understanding of ecosystem structure and function; effectively, an ecosystem-based approach to management. Parasites occur, albeit cryptically, in almost all ecosystems, yet they are usually neglected in studies on populations and communties of organisms. Parasites can have pronounced or subtle effects on hosts affecting host behavior, growth, fecundity, and mortality. Furthermore, parasites may regulate host population dynamics and influence community structure. Many parasites have complex life cycles and depend for transmission on the presence of a variety of invertebrate and vertebrate intermediate hosts. Often transmission involves predator–prey interactions. Thus, parasites reflect the hosts position in the food web and are indicative of changes in ecosystem structure and function. Parasites can provide information on population structure, evolutionary hypotheses, environmental stressors, trophic interactions, biodiversity, and climatic conditions. I use examples from diverse freshwater and marine systems to demonstrate that parasites should be incorporated into research and monitoring programs to maximize information gathered in ecosystem-based studies and resource management.Supplementary Tables 3, 4, 5, 6 and additional references for this article are available for viewing by subscribers only at     

面向生态系统服务的森林生态系统经营:现状、挑战与展望

森林生态系统是地球陆地生态系统的主体,它具有很高的生物生产力和生物量以及丰富的生物多样性,对全球生态系统和人类经济社会发展起着至关重要和无可替代的作用。伴随着人口的不断增长和经济社会的迅猛发展,对森林资源和森林生态系统服务的需求不断高涨,而且人类对森林资源价值的认识也发生了很大程度的改变。推进森林资源可持续经营,增加森林总量、提高森林质量、增强生态功能,已成为中国林业可持续发展乃至推进中国生态文明建设和建设美丽中国的战略任务。本文全面综述了森林生态系统经营发展历程,分析了森林生态系统经营的现状和存在问题,在此基础上,提出整合基于生态系统管理与满足现代人类福祉对森林多重需求的新的森林生态系统经营理念,面向生态系统服务的森林生态系统经营理念是未来的发展趋势。森林经营发展战略表现为:1)从单纯的森林面积数量扩张,转变到提高单位面积的森林生产力和森林质量;2)从单一追求木材生产逐步转变为多目标经营,将森林林产品单一的经营目标转变为广泛的生态、经济和社会等多目标经营;3)森林经营重点从林分水平转变为森林景观的经营,强调森林景观的时空异质性和动态变化,权衡和协同多种生态系统的服务功能,倡导森林景观的多样性和连通性,提高森林与其它土地利用模式镶嵌构成的复合景观的可持续性和稳定性,增强森林生态系统对气候变化影响的适应能力;4)森林生态系统经营将从依赖传统经验的主观决策转变为信息化、数字化和智能化的决策,发展森林生态系统经营决策支持系统和森林景观恢复与空间经营规划系统。     

Changes and drivers of zooplankton diversity patterns in the middle reach of Yangtze River floodplain lakes,China

Anthropogenic habitat alteration interferes the natural aquatic habitats and the system''s hydrodynamics in the Yangtze River floodplain lakes, resulting in a serious decline in freshwater biodiversity. Zooplankton communities possess major position in freshwater ecosystems, which play essential parts in maintaining biological balance of freshwater habitats. Knowledge of processes and mechanisms for affecting variations in abundance, biomass, and diversity of zooplankton is important for maintaining biological balance of freshwater ecosystems. Here, we analyzed that the temporal and spatial changes in the structure of zooplankton community and their temporal and spatial variations respond to changes in environmental factors in the middle reach of Yangtze River floodplain lakes. The results showed that zooplankton samples were classified into 128 species, and Rotifera was the most common taxa. Significant seasonal differences were found among the abundance and diversity of zooplankton. Similarly, we also found significant seasonal differences among the biomass of zooplankton functional groups. The spatial turnover component was the main contributor to the β diversity pattern, which indicated that study areas should establish habitat restoration areas to restore regional biodiversity. The NMDS plot showed that the structure of zooplankton community exhibited significant seasonal changes, where the community structure was correlated with pH, water temperature, water depth, salinity, total nitrogen, chlorophyll‐a, and total phosphorus based on RDA. This study highlights that it is very important to ensure the floodplain ecosystem''s original state of functionality for maintaining the regional diversity of the ecosystem as a whole.     

近海海洋生态连通性研究进展

生态连通性是空间生态学和保护生物学的重要概念和研究手段。国外越来越多的研究表明,开展近海海洋生态连通性研究对促进海洋生态系统保护和修复具有十分重要的现实意义。阐述了近海海洋生态连通性的概念与机制,回顾了目前近海海洋连通性的研究进展并分析了存在的问题,总结了近海海洋生态连通性研究的框架和具体方法,最后提出我国开展近海海洋生态连通性研究的建议,以期对今后国内开展海洋生态连通性相关研究工作有所启示。     

基于生态系统方法的大海洋生态系管理

大海洋生态系是指海洋中具有独特海洋学和生态学特征的一个较大的区域,其自然特性要求采用基于生态系统的方法对其进行管理.一系列的国际条约和章程均明确或间接支持采用基于生态系统方法管理大海洋生态系,实现海洋资源的可持续利用.实践方面,加拿大、澳大利亚、美国等采用了基于生态系统方法对其海洋进行管理,全球环境基金会等国际组织实施了一些基于生态系统方法的大海洋生态系项目,加勒比共同体等区域组织建立了旨在实现其渔业可持续发展的区域渔业机制.而基于生态系统方法的大海洋生态系管理能否最终成功实施,不仅是一个科学和法律问题,而且在很大程度上也是一个政治问题,依赖于相关国 家的政治意愿与相互合作的程度.     

Identifying Thresholds for Ecosystem-Based Management

Background

One of the greatest obstacles to moving ecosystem-based management (EBM) from concept to practice is the lack of a systematic approach to defining ecosystem-level decision criteria, or reference points that trigger management action.

Methodology/Principal Findings

To assist resource managers and policymakers in developing EBM decision criteria, we introduce a quantitative, transferable method for identifying utility thresholds. A utility threshold is the level of human-induced pressure (e.g., pollution) at which small changes produce substantial improvements toward the EBM goal of protecting an ecosystem''s structural (e.g., diversity) and functional (e.g., resilience) attributes. The analytical approach is based on the detection of nonlinearities in relationships between ecosystem attributes and pressures. We illustrate the method with a hypothetical case study of (1) fishing and (2) nearshore habitat pressure using an empirically-validated marine ecosystem model for British Columbia, Canada, and derive numerical threshold values in terms of the density of two empirically-tractable indicator groups, sablefish and jellyfish. We also describe how to incorporate uncertainty into the estimation of utility thresholds and highlight their value in the context of understanding EBM trade-offs.

Conclusions/Significance

For any policy scenario, an understanding of utility thresholds provides insight into the amount and type of management intervention required to make significant progress toward improved ecosystem structure and function. The approach outlined in this paper can be applied in the context of single or multiple human-induced pressures, to any marine, freshwater, or terrestrial ecosystem, and should facilitate more effective management.     

Cryptic female choice favours sperm from major histocompatibility complex-dissimilar males

Cryptic female choice may enable polyandrous females to avoid inbreeding or bias offspring variability at key loci after mating. However, the role of these genetic benefits in cryptic female choice remains poorly understood. Female red junglefowl, Gallus gallus, bias sperm use in favour of unrelated males. Here, we experimentally investigate whether this bias is driven by relatedness per se, or by similarity at the major histocompatibility complex (MHC), genes central to vertebrate acquired immunity, where polymorphism is critical to an individual''s ability to combat pathogens. Through experimentally controlled natural matings, we confirm that selection against related males'' sperm occurs within the female reproductive tract but demonstrate that this is more accurately predicted by MHC similarity: controlling for relatedness per se, more sperm reached the eggs when partners were MHC-dissimilar. Importantly, this effect appeared largely owing to similarity at a single MHC locus (class I minor). Further, the effect of MHC similarity was lost following artificial insemination, suggesting that male phenotypic cues might be required for females to select sperm differentially. These results indicate that postmating mechanisms that reduce inbreeding may do so as a consequence of more specific strategies of cryptic female choice promoting MHC diversity in offspring.