Benefits and challenges of maintaining national plant pest lists: an analysis of agricultural pests in Bhutan

Developing and maintaining national plant pest lists helps fulfil international obligations for trading countries, and also provides a foundation for national biosecurity systems. However, if done, lists and analyses are rarely made publically available. We compiled a national plant pest list for Bhutan, a relatively small but agriculturally diverse country for which plant protection is a recent discipline. We treated this pest list as a case study to test the benefits and challenges of maintaining such lists. Six hundred and forty‐five pest species were recorded across 64 different crops. Of those, only 17.0% were listed for Bhutan in the widely used CABI Crop Protection Compendium. Most species (86.4%) were first recorded during the initial discovery phase (1985–88) of a long‐running European Community funded aid programme. Regular taxonomic changes means keeping pest lists up to date requires both effort and expertise (27.0% of the 407 species identified by 1988 have since undergone name changes). Confidence in taxonomic identifications reduced drastically as access to international expertise decreased, from about 69.1% of species being identified with high confidence prior to 1988 to 8.1% afterwards. Many recent records lacked reference material, and voucher specimens for older material are mostly located internationally, making any revision challenging. Of the best represented taxa, greatest taxonomic uncertainty was for nematodes and viruses. Similar patterns were evident for the 112 damaging pest species, defined as those that at least occasionally and locally cause significant losses or require management actions within Bhutan. Of the damaging pests identified to species, all but one was also recorded in India, Bhutan's most important trading partner, and only 16 were restricted to Asia. New damaging pests continue to be recorded, but only five species may represent new incursions since 1988. National pest lists are critical, but to be of greatest value they need to capture taxonomic uncertainty, and focus on pests of greatest significance. For most countries, the development, maintenance and use of a national plant pest list will require ongoing regional and global cooperation to overcome taxonomic impediments, and to maximise the benefits of such lists in terms of facilitating trade and guiding domestic biosecurity activities.     

The role of taxonomy in species conservation

Taxonomy and species conservation are often assumed to be completely interdependent activities. However, a shortage of taxonomic information and skills, and confusion over where the limits to 'species' should be set, both cause problems for conservationists. There is no simple solution because species lists used for conservation planning (e.g. threatened species, species richness estimates, species covered by legislation) are often also used to determine which units should be the focus of conservation actions; this despite the fact that the two processes have such different goals and information needs. Species conservation needs two kinds of taxonomic solution: (i) a set of practical rules to standardize the species units included on lists; and (ii) an approach to the units chosen for conservation recovery planning which recognizes the dynamic nature of natural systems and the differences from the units in listing processes that result. These solutions are well within our grasp but require a new kind of collaboration among conservation biologists, taxonomists and legislators, as well as an increased resource of taxonomists with relevant and high-quality skills.     

A review of the ticks (Acari: Ixodida) of Turkey: species diversity, hosts and geographical distribution

Ticks are important ectoparasites, causing a variety of serious infectious diseases in humans and domestic animals. There is very limited taxonomic information about the tick species of Turkey in the literature, even though Turkey has very suitable climate and vegetation for ticks. In the current study, species diversity, hosts and geographical distribution of the ticks present in Turkey are reviewed based on taxonomic data in the literature from 1915 to 2011 and our recent observations. The names of tick species are arranged according to the most recent check lists. The taxonomic records in the literature and our studies on actual tick samples indicated that the tick fauna of Turkey consists of 46 species; 38 species from Ixodidae and 8 species from Argasidae.     

Exploring taxonomic filtering in urban environments

Question: Several mechanisms have been proposed that control the spatio‐temporal pattern of species coexistence. Among others, the species pool hypothesis states that the large‐scale species pool is an important factor in controlling small‐scale species richness through filtering of species that can persist within a species assemblage on the basis of their tolerance of the abiotic environment. Because of the process of environmental filtering, co‐occurring species that experience similar environmental conditions are likely to be more taxonomically similar than ecologically distant species. This is because, due to the conservatism of many species traits during evolutionary diversification, the ability of species to colonize the same ecological space is thought to depend at least partially on their taxonomic similarity. The question for this study is: Under the assumption of trait conservatism, does environmental filtering lead to nonrandom species assemblages with respect to their taxonomic structure? Methods: The significance of taxonomic filtering in regulating species coexistence is tested using data from 15 local species assemblages from the urban flora of Rome (Italy). To find out whether the taxonomic structure of the selected’ local’ species assemblages was significantly different from random, we used a Monte Carlo simulation in which for each local species assemblage, the actual taxonomic diversity was compared to the taxonomic diversity of 1000 virtual species lists of the same size extracted at random from a larger ‘regional’ species pool. Results: We found that in most cases the local species assemblages have a higher degree of taxonomic similarity than would be expected by chance showing a phenomenon of ‘species condensation’ in a small number of higher‐level taxa. Conclusions: Our observations support the species pool hypothesis and imply that environmental filtering is an important mechanism in shaping the taxonomic structure of species assemblages. Therefore, the incorporation of taxonomic diversity into landscape and community ecology may be beneficial for a better understanding of the processes that regulate species coexistence.     

An Approach to Interpretation of Lists of Insects Using Digitised Biological Information about The Species

Predicted species lists are generated from regional species pools, coupled to codified habitat, microhabitat and biological trait data for the species. At site level, habitat association data are used to tailor the predicted list to site conditions and comparison between predicted and observed species lists is used to explore elements of site quality and site management options involving microhabitat and trait data for the species in the process. It is pointed out that this approach makes possible the interpretation of insect species lists by non-specialist site managers. At larger geographic scales, attributes of regional lists are identified. Throughout, the approach is considered in the context of its potential to contribute to resolution of issues relating to maintenance of biodiversity in Europe and the taxonomic group employed is the Syrphidae (Diptera).     

Conservation to the rescue of taxonomy

Biodiversity studies and conservation measures depend on good and up-to-date taxonomic data. General faunistic lists are the result of long periods of sampling. How many species on a global list are actually living in an area can only be answered by updating inventories. The progressive disappearance of taxonomic specialists and the undervaluation of their work is not only unjustified, but could lead to specialists from other disciplines working with meaningless data.     

Implications of poor taxonomy in conservation

Red Lists are legal instruments that guide decisions within the context of conservation. Such lists can indicate the most appropriate conservation actions, leading to choices of priority areas for conservation, or create alternatives to ensure the preservation of threatened species. However, if Red Lists are effective tools in the conservation of threatened species, then it is important that we have guaranteed the quality of taxonomic delimitation of these taxa. Here we discuss a case of taxonomic confusion, emphasizing the implications of misidentification in Red Lists. To avoid mistakes in species conservation, we advocate that a minimum level of taxonomic knowledge is needed to ensure success in preserving target species. Therefore, complementarity of taxonomy and conservation guarantee stronger conservation actions.     

The pitfall-trap of species conservation priority setting

To elucidate the factors underlying species conservation priority setting, we analysed the relationships among species’ structural complexity, scientific attention, threatened species listing, and conservation investments at different organisational levels, including global, European, national, and sub-national. Although the literature often highlights the need to consider criteria other than extinction risk status, our results show that an excessive use of Red lists still persists in the setting of conservation priorities. We found that organismal complexity, available scientific information, and species listing combine together to create a positive feed-back loop, in which more complex organisms have a larger proportion of threatened species in the Red lists and legal lists. This bias promotes research that is devoted to understanding conservation problems as well as more funds invested to solve them. We propose that a sort of pitfall-trap is currently constraining the species conservation priority setting, in which few species, mainly threatened and better-known species, tend to receive most of the funds and policy attention. To counteract this pitfall-trap, we highlight the need to increase scientific effort on lower taxa and expand Red lists to assess lesser-known taxonomic groups as well as the need to use other criteria for species conservation prioritisation.     

Taxonomic and geographic bias in the genetic study of helminth parasites

The use of genetic information is now fundamental in parasite taxonomy and systematics, for resolving parasite phylogenies, discovering cryptic species, and elucidating patterns of gene flow among parasite populations. The accumulation of available gene sequences per geographical area or per parasite taxonomic group is likely proportional to species richness, but not without some biases. Certain areas and certain taxonomic groups receive more research effort than others, possibly causing a deficit in the relative number of parasite species being characterized genetically in some areas or taxonomic groups. Here, we use data on the number of parasite records per country or helminth family from the London Natural History Museum host-parasite database, and matching data on the number of gene sequences available from the National Center for Biotechnology Information (NCBI) GenBank database, to determine how available gene sequences scale with species richness across countries or parasitic helminth families. Our quantitative analysis identified countries/regions of the world and helminth families that have received the most effort in genetic research. More importantly, it allowed us to generate lists (based on residuals from the statistical model) of the 20 countries/regions and the 20 helminth families with the largest deficit in available gene sequences relative to their helminth species richness. We propose these lists as useful guides toward future allocation of effort to maximise advances in parasite biodiscovery, systematics and population structure.     

A comparative analysis of global, national, and state red lists for threatened amphibians in Brazil

The knowledge about the conservation status of species is an important data for conservation biology. Therefore, threatened species lists are a powerful tool for conservation planning and prioritization. Our objective is to compare the global, the national and state red lists of amphibians in Brazil. Threatened species were categorized according to their listing in one or several of these lists. We analyzed for true inconsistencies across lists in order to evaluate practical consequences of such incongruences on amphibian conservation in Brazil. We recorded a total of 61 threatened amphibian species in Brazil (across all red lists). Only one species, Phrynomedusa fimbriata, was listed as Extinct (both in IUCN, Brazil and S?o Paulo lists). A total of eleven endemic species are listed as threatened by the global red list, but do not appear in Brazil’s national red list, which represent an inconsistence among these lists. Besides that, the threat category of Thoropa lutzi and Thoropa petropolitana, two endemic species, differ among both lists, which also represents a problem between both lists. These mismatches may be due to several reasons such as different interpretation of the criteria; different methodologies used; different data availability on species; differences in the dates of assessments processes; the assessors’ attitudes to uncertainty; outdated red lists. Harmonization among red lists permits a better picture of threatened amphibian diversity across scales and to develop global, national and state plans to complement conservation actions in order to maximize the chance of success of these initiatives.     

昆虫病原线虫资源概况和分类技术进展

昆虫病原线虫是具有重要潜在应用价值的害虫生物防治资源,主要包括斯氏线虫科（Steinernematidae）的斯氏线虫属Steinernema与新斯氏线虫属Neosteinernema线虫和异小杆线虫科（Heterorhabditidae）的异小杆线虫属Heterorhabditis线虫。近10年来,分子生物学方法与传统的形态学方法相结合应用到线虫的鉴定与分类,昆虫病原线虫的分类进入稳定与发展时期,越来越多的新种或品系被发现及应用于生物防治。目前已描述的昆虫病原线虫种类达65种,其中斯氏线虫属52种,新斯氏线虫属1种,异小杆线虫属12种。本文整理列出了迄今报道的昆虫病原线虫种类及其来源,并综述了昆虫病原线虫分类现状以及鉴定与分类方法上的研究进展,重点阐述了分子生物学技术在昆虫病原线虫鉴定与分类的应用状况。     

Hosts as habitats: faunal similarity of phytophagous insects between host plants

1. Published lists on the phytophages recorded on 86 cabbage plant species (Brassicaceae) and 30 thistle species (Cynaroideae) were used to investigate patterns in the faunal similarity of phytophages. This was done by calculating the Jaccard index and a standardised index of similarity between pairs of host species using presence/absence data. 2. The faunal similarity measured as Jaccard indices indicated that pairs of cabbage hosts share on average 36% of phytophagous species whereas pairs of thistle hosts share only 10%. 3. The faunal similarity between two host species increased with the taxonomic affinity of hosts. This increase was more pronounced in thistles than in cabbage plants. 4. Irrespective of the taxonomic affinity of hosts, in the cabbage plants the faunal similarity of endophages was lower than in ectophages. In contrast, in the thistles faunal similarity differed only between endophages and ectophages for hosts of the same genera. 5. Differences in the patterns of faunal similarity between the two host taxa may be due to idiosyncratic characteristics of the plant taxa, e.g. the unique chemical properties of the cabbage plants and the resource‐rich flower heads of thistles.     

The 'species problem' and testing macroevolutionary hypotheses

Species lists change for a variety of reasons, including new information and preferences for different species concepts. Uncertainty over species numbers is potentially damaging to tests of proposed correlates of species richness, particularly if taxonomic changes are biased toward some clades over others. We investigate the effects of this error and bias by testing the same suite of macroevolutionary hypotheses in seven different arrangements of primate taxonomy. This is the first time that the effects of the ‘species problem’ have been systematically investigated in this way. Primates are an excellent model system for examining the effects of taxonomic uncertainty: species numbers have doubled in the past two decades, with the fastest growth in the Neotropics. We found that different variables were significantly associated with species richness in each taxonomic arrangement. However, there were no significant differences among taxonomies in the regression slopes for any predictor variable. We found no tendency for significant correlations to occur in taxonomies with more species, suggesting that the results cannot be explained by a lack of power in the smaller taxonomies. The findings are discussed with reference to the wider implications for testing macroevolutionary hypotheses.     

Observations on Isoetes in Ghana

Three species of Isoetes, I. abyssinica Chiovenda, I. nigritiana A. Br. and I. tenuifolia A. C. Jermy, here described for the first time, are reported from Ghana. All species are found in seasonally saturated or flooded hollows and species lists of associate plants are given for the sites and are discussed in relation to water and soil analyses.
The morphology and anatomy of the sporophylls of all three species are compared, and the taxonomic value of the pseudo-ligule, idioblasts projecting into the four lacunae of the leaf ('internal hairs') and intrastelar canals is evaluated. The first chromosome count for a West African species of Isoetes is reported as 2 n = c . 58.     

A methodological approach to the use of terrestrial invertebrates for the assessment of alluvial wetlands

We review progress toward developing a data-analysis system using invertebrate species lists in wetland evaluation procedures. Species lists for Mollusca, Carabidae (Coleoptera), Empidoidea and Syrphidae (Diptera), derived from samples collected at six stations along a transect established at a site on the floodplain of the River Loire (France) provide the raw data. An initial analysis using a traditional ordination method (Correspondence Analysis) is carried out. A data base was established for the 118 mollusc, carabid and syrphid species recorded, and each species was then treated not as a simple integer, but as an amalgam of digitised attributes deemed responsive to wetland conditions, in a correspondence analysis on instrumental variables. Despite the generalized nature of the attributes as defined for this example, the approach demonstrates a marked increase in interpretability of the output of analysis, in respect of the relation between the species and the floodplain environment. It also highlights the value of use of data pertaining to more than one taxonomic group and of selecting these taxonomic groups on the basis of complementarity of their bioindicator potential.Corresponding Editor: J.T.A. Verhoeven     

Two new species of <Emphasis Type="Italic">Zercon</Emphasis> (Acari: Zerconidae) from Turkey

Two new species of zerconid mites, Zercon uludagicus sp. n. and Z. huseyini sp. n., from Turkey are described and illustrated. The similarities and differences between the species are discussed. The lists of the taxonomic diagnostic key to adults of Zercon species known from Turkey are also given.