Protons at bio-interfaces

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Organogenesis at the shoot apex: An attempt at modelization

A geometrical model of the emergence of a primordium at the shoot apex in dicotyledons is proposed. It is based on recent fundamental results on plant morphogenesis, i.e.:

1. the emergence is preceded by the reorganization of the microtubules of the cortical cytoskeleton, leading to a new orientation of the synthesis of the cell wall microfibrils;
2. the resulting global stress is related to the general orientation of the cell growth.

So the model sums up the continuous interactions linking the microtubules, the microfibrils and the cell growth axis. This paper tries to answer three questions which are essential from a botanical point of view:

1. Why does the principal stem shift its growth direction after each lateral emergence?
2. Why do the three axes involved in any ramification (namely the old and the new principal stems and the lateral emergence) exhibit a plane configuration whereas this is an essentially three dimensional phenomenon?
3. Does phyllotaxis exclusively depend upon the local emergence of a primordium?

A come and go between the botanical knowledge and the mathematical model leads to an integrated view of the compatibility mechanisms linking the different microtubules and microfibrils networks, without forgetting the apical dome restoration. A geometrical formalism allows a modern redefinition of both the “generating centre” and the “organizing centre” and their field effects.     

An attempt at re-establishing the swallowtail butterfly at Wicken Fen

Abstract.

• 1 Details of a reintroduction of the swallowtail, Papilio machaon, to Wicken Fen are given.
• 2 The introduced population expanded at first, but crashed as a result of the 1976 drought. It then failed to recover and is probably now again extinct on the Fen.
• 3 The changes in the habitat and the status of the butterfly's food plant, Peucedanum palustre, caused by the drying out of the Fen are discussed, and it is concluded that there is no chance of reestablishing the butterfly permanently at Wicken, unless the Fen can be made wetter.

     

Photoinhibition at chilling temperature

The effects of moderate light at chilling temperature on the photosynthesis of unhardened (acclimated to +18° C) and hardened (cold-acclimated) spinach (Spinacea oleracea L.) leaves were studied by means of fluorescence-induction measurements at 20° C and 77K and by determination of quantum yield of O₂ evolution. Exposure to 550 mol photons·m^-2·s^-1 at +4° C induced a strong photoinhibition in the unhardened leaves within a few hours. Photoinhibition manifested by a decline in quantum yield was characterized by an increase in initial fluorescence (F _o) and a decrease in variable fluorescence (F _v) and in the ratio of variable to maximum fluorescence (F _V/F _M), both at 77K and 20° C. The decline in quantum yield was more closely related to the decrease in the F _V/F _M ratio measured at 20° C, as compared with F _V/F _M at 77K. Quenching of the variable fluorescence of photosystem II was accompanied by a decline in photosystem-I fluorescence at 77K, indicating increased thermal de-excitation of pigments as the main consequence of the light treatment. All these changes detected in fluorescence parameters as well as in the quantum yield of O₂ evolution were fully reversible within 1–3 h at a higher temperature in low light. The fast recovery led us to the view that this photoinhibition represents a regulatory mechanism protecting the photosynthetic apparatus from the adverse effects of excess light by increasing thermal energy dissipation. Long-term cold acclimation probably enforces other protective mechanisms, as the hardened leaves were insensitive to the same light treatment that induced strong inhibition of photosynthesis in unhardened leaves.Abbreviations F ₀ initial fluorescence - F _M maximum fluorescence - F _V variable fluorescence (F _M-F ₀ - PFD photon flux density - PS photosystem     

A shot at AIDS

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Eco Days at Marion

Wendy Saul with Alan R. Newman Science Fare: An Illustrated Guide and Catalog of Toys, Books and Activities for Kids New York: Harper &; Row, 1986 295 pp. $27.95 hardcover, $14.95 paper. Reviewed by Lloyd Wolfinbarger, Jr.

George D. Zuidema, ed., and Leon Schlossberg, illus. The Johns Hopkins Atlas of Human Functional Anatomy, 3d ed. Baltimore, Md.: The Johns Hopkins University Press, 1986 125 pp. $25 hardcover, $14.95 paper. Reviewed by Lloyd Wolfinbarger, Jr.

Alvin Silverstein and Virginia B. Silverstein The Story of Your Hand New York: G. P. Putnam's Sons, 1985 76 pp. $9.99 hardcover (library binding). Reviewed by Robert W. Boenig.

Langdon Winner The Whale and the Reactor: A Search for Limits in an Age of High Technology Chicago: The University of Chicago Press, 1986 178 pp. $17.50 hardcover. Reviewed by George G. Mallinson.

British Museum Dinosaurs and Their Living Relatives, 2nd edition New York: Cambridge University Press, 1986 72 pp. $24.95 hardcover. Reviewed by George R. Zug.     

Week-end bias at observatories

Capsule Although subject to human disturbance Turtle Doves do nest successfully in these olive and orange orchards.

Aim To investigate the breeding ecology of Turtle Doves in a man‐made agricultural habitat in central Morocco.

Methods Turtle Dove nests were monitored in orange and olive orchards over three years (2006, 2007 and 2008). Nest abundance, nest location, egg‐laying chronology, clutch size, nest survival rates and breeding success were determined and compared between orchard types.

Results The Moroccan population of Turtle Doves start breeding earlier than European populations. Clutch size, nest survival rates and breeding success were similar in orange and olive orchards. Nest location differed between orange and olive trees. Nest densities were 16 nests/ha in olive orchards and 45 nests/ha in orange orchards. Nest success rate averaged 48%. Daily nest survival rates did not vary according to orchard types, year and date. In the two orchards, no nest position variables were significant predictors of nesting success.

Conclusion Although highly frequented by people, fruit orchards seem to be suitable breeding habitats for Turtle Doves in this region.     

Autophosphorylation at serine 1981 stabilizes ATM at DNA damage sites

Ataxia telangiectasia mutated (ATM) plays a critical role in the cellular response to DNA damage. In response to DNA double-strand breaks (DSBs), ATM is autophosphorylated at serine 1981. Although this autophosphorylation is widely considered a sign of ATM activation, it is still not clear if autophosphorylation is required for ATM functions including localization to DSBs and activation of ATM kinase activity. In this study, we show that localization of ATM to DSBs is differentially regulated with the initial localization requiring the MRE11–RAD50–NBS1 complex and sustained retention requiring autophosphorylation of ATM at serine 1981. Autophosphorylated ATM interacts with MDC1 and the latter is required for the prolonged association of ATM to DSBs. Ablation of ATM autophosphorylation or knock-down of MDC1 protein affects the ability of ATM to phosphorylate downstream substrates and confer radioresistance. Together, these data suggest that autophosphorylation at serine 1981 stabilizes ATM at the sites of DSBs, and this is required for a proper DNA damage response.     

To be at the right place at the right time

Diagnosing Alzheimer's disease through MRI neuroimaging biomarkers has been used as a complementary marker for traditional clinical markers to improve diagnostic accuracy and also help in developing new pharmacotherapeutic trials. It has been revealed that longitudinal analysis of the whole brain atrophy has the power of discriminating Alzheimer's disease and elderly normal controls. In this work, effect of involving intermediate atrophy rates and impact of using uncorrelated principal components of these features instead of original ones on discriminating normal controls and Alzheimer's disease subjects, is inspected. In fact, linear discriminative analysis of atrophy rates is used to classify subjects into Alzheimer's disease and controls. Leave-one-out cross-validation has been adopted to evaluate the generalization rate of the classifier along with its memorization. Results show that incorporating uncorrelated version of intermediate features leads to the same memorization performance as the original ones but higher generalization rate. As a conclusion, it is revealed that in a longitudinal study, using intermediate MRI scans and transferring them to an uncorrelated feature space can improve diagnostic accuracy.     

Diversity at hydrothermal vents

Aim To describe patterns of hydrothermal vent community diversity and dispersion at the intersegment scale (> 100 km). Location The area discussed is an approximately 170 km portion of the Juan de Fuca Ridge, a mid‐ocean ridge in the north‐east Pacific Ocean. Methods Samples of benthic invertebrates from hydrothermal vents on three segments of the Juan de Fuca are examined for community characteristics such as diversity, abundance and distribution. Results Species richness (55 species) and evenness are low. If the macrofauna only are considered, species richness is about 30% lower than when meiofauna are also considered. The geometric series describes the species‐abundance distribution. The relationship between vent species’ distribution and abundance is significantly positive (r² = 0.818; P < 0.001). Alpha diversity is lower in patchy habitat than continuous habitat and gamma diversity is similar for both habitat types. Beta diversity is higher in patchy habitat. Local diversity is linearly related to regional diversity. Main conclusions Species richness is comparable to other highly disturbed systems. The geometric series species abundance model implies some degree of niche pre‐emption in the vent community and is consistent with the suggestion that the geometric series distribution can be found in species‐poor environments that experience harsh conditions and are structured by relatively few environmental factors. Species distribution and abundance are highly correlated. The regional species pool affects local vent diversity. Vent diversity studies should be conducted on at least the ridge scale.     

Abstracts of Papers Read at the Winter Meeting at the University of Liverpool

Previous investigations with planktonic cyanobacteria have suggested that these organisms do not form new gas vesicles in the dark. This study, on Microcystis sp., confirmed that cells that had been preincubated at low photon irradiances (< 15 μmol m^-2 s^-1) formed negligible amounts of gas vesicles in the dark. Significant gas vesicle formation occurred, however, in cells preincubated continuously at higher irradiances, and particularly within the range 65 to 105 μmol m^-2 s^-1. The results suggest that gas vesicle formation in the dark is dependent on the prior accumulation of energy reserves. The amount of gas vesicles formed in continuous light was linearly related to irradiance over the range 0 to 20 μmol m^-2 s^-1, and reached a maximum at only 30 μmol m^-2 s^-1 that was over five times the amount formed at higher irradiances. This suggests that the rate of gas vesicle formation, regulated directly in response to irradiance, has a role in the light-mediated buoyancy regulation of this cyanobacterium.     

Interallelic Complementation at the sh Locus in Maize at the Enzyme Level

EMS-induced sh mutants and their heterozygotes were examined for the enzyme, sucrose synthetase, which has previously been shown to be coded by the Sh locus. Complementing heterozygotes have a wild-type phenotype, but show no hybrid protein band after starch gel electrophoresis. The existence of a heteromeric complex, however, is inferred from the two-fold elevation in sucrose cleavage activity in the complementing heterozygotes as compared to the mutant homozygotes. The observations on complementation described here are unique, as the elevation in the activity of this reversible enzyme is noticed only in one direction (viz, sucrose cleavage) of the reaction and not the other (sucrose synthesis).     

Proteins at atomic resolution

Experimental advances in data collection, including bright sources, cryogenic cooling and two-dimensional detectors, have made it tractable to record data to beyond 1.2 Å for several proteins, yielding high-accuracy models and fine details of structure. For small metalloproteins, atomic-resolution data have enabled ab initio solution of the phase problem.     

Biomolecules at phase boundaries

Experimental and theoretical studies of biomolecules at water surfaces and metal surfaces are presented. We studied lecithin molecules (monolayers) and phospholipase A₂ at a water surface with molecular dynamics (MD) simulations. Results were compared with those obtained for a pure water surface. We also studied amino acids at a TiO₂ surface with thermal desorption spectroscopy in the presence and absence of water.     

Moms at Work and Dads at Home: Children's Evaluations of Parental Roles

Children's evaluations of two parental roles, working outside the home, and staying home to take care of children, were assessed in second (M = 7.13 years, SD = .39) and fifth grade (M = 10.42, SD = .57) students (N = 121). Children viewed it as acceptable for both mothers and fathers to work full-time, and used personal choice and social conventional reasons as justifications. In contrast, children found it less acceptable for fathers to stay at home than for mothers to stay at home, and they used gender stereotypes about domestic roles as justifications. With age, children were more flexible in their reasoning and used fewer stereotypes in their evaluations; children from traditional family structures used more stereotypic expectations than did children from non-traditional ones. Overall, children's interpretations of competence in a caretaker role was highly contingent on the gender of the parent.     

Freeze-dried plasma proteins are stable at room temperature for at least 1 year

Thirty human EDTA plasma samples from male and female subjects ranging in age from 24 to 74 years were collected on ice, processed ice cold and stored frozen at ?80 °C, in liquid nitrogen (LN2), or freeze dried and stored at room temperature in a desiccator (FDRT) or freeze dried and stored at ?20 °C for 1 year (FD-20). In a separate experiment, EDTA plasma samples were collected onto ice, processed ice cold and maintained on ice ± protease inhibitors versus incubated at room temperature for up to 96 h. Random and independent sampling by liquid chromatography and tandem mass spectrometry (LC–ESI–MS/MS), as correlated by the MASCOT, OMSSA, X!TANDEM and SEQUEST algorithms, showed that tryptic peptides from complement component 4B (C4B) were rapidly released in plasma at room temperature. Random sampling by LC–ESI–MS/MS showed that peptides from C4B were undetectable on ice, but peptides were cleaved from the mature C4B protein including NGFKSHALQLNNR within as little as 1 h at room temperature. The frequency and intensity of precursors within ± 3 m/z of the C4B peptide NGFKSHALQLNNR was confirmed by automated targeted analysis where the precursors from MS/MS spectra that correlated to the target sequence were analyzed in SQL/R. The C4B preproprotein was processed at the N terminus to release the mature chain that was cleaved on the carboxyl side of the isoprene C2 domain within a polar C terminal sequence of the mature C4B protein, to reveal the thioester reaction site, consistent with LC–ESI–MS/MS and Western blot. Random sampling showed that proteolytic peptides from complement component C4B were rarely observed with long term storage at ? 80 °C in a freezer or in liquid nitrogen (LN2), freeze drying with storage at ? 20 °C (FD-20 °C) or freeze drying and storage at room temperature (FDRT). Plasma samples maintained at room temperature (RT) showed at least 10-fold to 100-fold greater frequency of peptide correlation to C4B and measured peptide intensity compared to samples on ice for up to 72 h or stored at ? 80 °C, LN2, FDRT or FD-20 °C for up to a year.     

Life at the edge

Extremophiles: Microbial Life in Extreme Environments (1998). Koki Horikoshi and William D. Grant (Eds). Wiley-Liss, 311 pp. hardback; ISBN 0 471 02618 2 ($134.50)     

Lethal Thermal Impact at Periphery of Pyroclastic Surges: Evidences at Pompeii

Background

The evaluation of mortality of pyroclastic surges and flows (PDCs) produced by explosive eruptions is a major goal in risk assessment and mitigation, particularly in distal reaches of flows that are often heavily urbanized. Pompeii and the nearby archaeological sites preserve the most complete set of evidence of the 79 AD catastrophic eruption recording its effects on structures and people.

Methodology/Principal Findings

Here we investigate the causes of mortality in PDCs at Pompeii and surroundings on the bases of a multidisciplinary volcanological and bio-anthropological study. Field and laboratory study of the eruption products and victims merged with numerical simulations and experiments indicate that heat was the main cause of death of people, heretofore supposed to have died by ash suffocation. Our results show that exposure to at least 250°C hot surges at a distance of 10 kilometres from the vent was sufficient to cause instant death, even if people were sheltered within buildings. Despite the fact that impact force and exposure time to dusty gas declined toward PDCs periphery up to the survival conditions, lethal temperatures were maintained up to the PDCs extreme depositional limits.

Conclusions/Significance

This evidence indicates that the risk in flow marginal zones could be underestimated by simply assuming that very thin distal deposits, resulting from PDCs with poor total particle load, correspond to negligible effects. Therefore our findings are essential for hazard plans development and for actions aimed to risk mitigation at Vesuvius and other explosive volcanoes.     

Chromatin organization at meiosis

From 1956, when the complex ultrastructure of meiotic chromosomes was discovered, ¹ until 1985, when the isolation of meiotic chromosome cores was reported, knowledge of the molecular structure of the meiotic chromosome was at best a dream. The dissection of meiotic chromosome structures has become a realistic challenge through the arrival of isolated symptonemal complexes (SCs), monoclonal and polyclonal antibodies against SCs, the possibility for screening expression libraries for genes that encode SC proteins, the isolation of SC-associated DNA, and the development of techniques for the in situ recognition of DNA sequences in the context of the meiotic chromosome structure.     

Recollection-Based Retrieval Is Influenced by Contextual Variation at Encoding but Not at Retrieval

In this article, we investigated the effects of variations at encoding and retrieval on recollection. We argue that recollection is more likely to be affected by the processing that information undergoes at encoding than at retrieval. To date, manipulations shown to affect recollection were typically carried out at encoding. Therefore, an open question is whether these same manipulations would also affect recollection when carried out at retrieval, or whether there is an inherent connection between their effects on recollection and the encoding stage. We therefore manipulated, at either encoding or retrieval, fluency of processing (Experiment 1)—typically found not to affect recollection—and the amount of attentional resources available for processing (Experiments 2 and 3)—typically reported to affect recollection. We found that regardless of the type of manipulation, recollection was affected more by manipulations carried out at encoding and was essentially unaffected when these manipulations were carried out at retrieval. These findings suggest an inherent dependency between recollection-based retrieval and the encoding stage. It seems that because recollection is a contextual-based retrieval process, it is determined by the processing information undergoes at encoding—at the time when context is bound with the items—but not at retrieval—when context is only recovered.