The preparation and crystal structure of acetatobis(l-arginine)zinc(II) acetate trihydrate, the first reported X-ray structure of a zinc(II)-arginine complex

The synthesis and X-ray crystal structure of acetatobis(l-arginine)zinc(II) acetate trihydrate, [Zn(OAc)(l-Arg)₂]OAc·3H₂O is reported. In this structure, the first of a zinc(II)-arginine complex to be reported, the geometry around zinc(II) is distorted square-pyramidal containing two trans-N,O chelated l-Arg ligands in the basal plane and the acetato ligand in an axial position. The structure contains a second acetate which is salt-bridged to the δ and ω NH groups of the guanidinium side chain of an arginine ligand and also contains three hydrogen bonded water molecules.     

Mechanism of phosphoryl transfer by hexokinase

Yeast hexokinase was incubated with [γ¹⁸O]-ATP alone or with lyxose. The recovered ATP was found not to have undergone any significant transfer of ¹⁸O from the βγ-bridge to the β-nonbridge position. These results are contrary to mechanisms in which the ATP is reversibly cleaved prior to transfer to give product. During hydrolysis of ATP stimulated by lyxose there was no mixing of the P_i formed with water. When glucose was present positional exchange was observed. However, its rate was consistent with earlier measurements of the partition of the enzyme·products complex between return to substrate and release of products and thus does not signify cleavage of the ATP by mechanisms other than direct phosphoryl transfer to glucose. This agreement indicates that rotational freedom of the βPO₃ of ADP on the enzyme·Glc-6-P·ADP complex is not a limiting factor for scrambling oxygens within the ternary complexes.     

Reactions of seven coordinate complexes. Synthesis, structure, and copper complex of the novel ligand 3-methyltriazolo(1,5-a)6-acetylsemicarbazonepyridine

The reaction of aquachloro(2,6-diacetylpyridinedisemicarbazone)copper(II) with hydrazine hydrate gave the copper complex of 3-methyltriazolo(1,5-a)6-acetylsemicarbazonepyridine. The free ligand was isolated from the copper complex. The X-ray structures of both the copper complex and the free ligand are reported. The copper complex and the free ligand both crystallize in the triclinic space group with 2 molecules per cell. The Cu complex has cell dimensions of a=8.8574(4), b=10.1764(5), c=10.4434(5) Å, α=71.956(1), β=64.913(1), and γ=81.597(1)°. The Cu ion is in a square pyramidal arrangement, with the Cu, the ligand, and a Cl in the plane and a disordered Cl and H₂O in the apical position. The ligand has cell dimensions of a=7.2696(7), b=8.0516(7), c=9.9326(9) Å, α=110.534(2), β=96.730(2), and γ=100.089(2)°. The ligand is planar with a conformation determined by an internal N-H?H hydrogen bond. The role of the Cu ion in the formation of the triazolopyridine is discussed.     

Synthesis, characterization, X-ray molecular structure and catalase-like activity of a non-heme iron complex: Dichloro[N-propanoate-N,N-bis-(2-pyridylmethyl)amine]iron(III)

In this work we present the synthesis and characterization of the complex dichloro[N-propanoate-N,N-bis-(2-pyridylmethyl)amine]iron(III) [Fe^III(PBMPA)Cl₂]. The ligand LiPBMPA was synthesized through the Michael reaction of BMPA with methylacrylate, followed by alkaline hydrolysis. The complex [Fe^III(PBMPA)Cl₂] has been synthesized by the reaction of the ligand with FeCl₃ · H₂O and was mainly characterized by cyclic voltammetry, conductivimetry, and electronic, infrared and Mössbauer spectroscopies, and by X-ray structural analysis, which showed an iron center coordinated by one carboxylate oxygen in a monodentate way, one tertiary amine, two pyridine groups and two chloride ions. It has been proposed that in water the chloride ligands are shifted by the solvent molecules and the species [Fe^III(PBMPA)(H₂O)₂]Cl₂ is predominant. The catalase-like activity of the complex was tested in water, and it proved to be active in the hydrogen peroxide dismutation. Kinetics studies were conducted following the initial rates method. The reaction is first order in relation to both the complex and the hydrogen peroxide. Based on the presence of a lag phase that depends on the initial complex concentration, we propose that the active species that shows in situ catalase-like activity, is a binuclear complex.     

Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase

The three-dimensional structure of a Salmonella enterica hypothetical protein YihS is significantly similar to that of N-acyl-d-glucosamine 2-epimerase (AGE) with respect to a common scaffold, an α₆/α₆-barrel, although the function of YihS remains to be clarified. To identify the function of YihS, Escherichia coli and S. enterica YihS proteins were overexpressed in E. coli, purified, and characterized. Both proteins were found to show no AGE activity but showed cofactor-independent aldose-ketose isomerase activity involved in the interconversion of monosaccharides, mannose, fructose, and glucose, or lyxose and xylulose. In order to clarify the structure/function relationship of YihS, we determined the crystal structure of S. enterica YihS mutant (H248A) in complex with a substrate (d-mannose) at 1.6 Å resolution. This enzyme-substrate complex structure is the first demonstration in the AGE structural family, and it enables us to identify active-site residues and postulate a reaction mechanism for YihS. The substrate, β-d-mannose, fits well in the active site and is specifically recognized by the enzyme. The substrate-binding site of YihS for the mannose C1 and O5 atoms is architecturally similar to those of mutarotases, suggesting that YihS adopts the pyranose ring-opening process by His383 and acidifies the C2 position, forming an aldehyde at the C1 position. In the isomerization step, His248 functions as a base catalyst responsible for transferring the proton from the C2 to C1 positions through a cis-enediol intermediate. On the other hand, in AGE, His248 is thought to abstract and re-adduct the proton at the C2 position of the substrate. These findings provide not only molecular insights into the YihS reaction mechanism but also useful information for the molecular design of novel carbohydrate-active enzymes with the common scaffold, α₆/α₆-barrel.     

Diaquabis(3,6-dioxaheptanoato)copper(II): crystal structure and EPR characteristics

The structure of the title compound has been determined by X-ray diffraction at 190 K. The complex has an all trans configuration with an elongated tetragonally distorted octahedral CuO6 chromophore. The elongated axis corresponding to the trans-Cu–O(ether) bonds. The ligand molecules are bidentate via the carboxyl and the 3-ether O atoms; the 6-ether O atoms are not coordinated and are remote from the Cu centres. The bond lengths to the Cu centres are Cu–O(ether) 2.355 Å, Cu–O(Carboxyl) 1.933 Å and Cu–OH2 1.995 Å.The EPR spectrum of both the powder and frozen solution forms is typical of a rhombic system with a dx2−y21 electronic configuration. There were no significant differences in spectra recorded over the temperature range 77 K to room temperature. These results are discussed in relation to earlier published results on closely related oxa-carboxyl complexes.     

Synthesis, X-ray crystal structure and magnetic study of a dicyanamido bridged 1D chain nickel(II) complex

Reaction of Ni(NO₃)₂ · 6H₂O and sodium dicyanamide (Nadca) yields a 1D infinite chain complex {[Ni(dien)(μ_1,5-dca)(H₂O)](NO₃)}_n (1) (where dien = diethylenetriamine). The coordination environment in complex 1 around the nickel(II) ions is distorted octahedron. Three nitrogen atoms of the ligand diethylenetriamine and an oxygen atom of H₂O molecule constitute the four coordination sites of the basal plane of the octahedron. Of two axial positions of the octahedron, one position is occupied by the nitrogen atom of a μ_1,5-dca anion the remaining coordination site is occupied by a nitrogen atom of another end-to-end bridging dca from an adjacent [Ni(dien)(μ_1,5-dca)(H₂O)] moiety, yielding 1D infinite chains which propagate parallel to crystallographic a-axis. No measurable magnetic interaction was evidenced through variable temperature magnetic susceptibility measurements (4-300 K). However, the magnetic susceptibility of the compound can be explained in terms of single-ion anisotropic model with zero-field splitting for nickel(II) ions.     

Intramolecular hydrogen bonding: synthesis and crystal structure of nickel(II) and copper(II) complexes of a tetradentate amine oxime

In the reaction of the tetradentate ligand 3,3′-(1,4- butanediyldiamino) bis (3-methyl-2-butanone)-dioxime (BnAO) with nickel(II) and copper(II), the monomeric [Ni(BnAO-H)]I·H₂O and a mixed monomer/dimer salt [Cu(BnAO-H)H₂O]₂[(Cu(BnAO-H))₂](ClO₄)₄, respectively, are formed, and all complexes have an intramolecular hydrogen bond between cis oxime groups. The OHO bonds give the characteristic infrared absorptions as well as the downfield proton-NMR signal (Ni complex). [Ni(BnAO-H)]I·H₂O crystallizes in space group P2₁/a with a=13.511(2), b=10.599(2), c=14.096(2) Å, β=97.52°, Z=4 and D_c=1.623 g/cm³. The structure was solved by Patterson and Fourier methods and refined by full-matrix least-squares techniques to a final R of 0.021 for 2124 reflections with I 2σ(I). The nickel(II) atom in the complex has slightly distorted square planar geometry with an intramolecular O···O contact of 2.417(7) Å. The copper(II) complex crystallizes in space group P2₁/c with a =13.425(2), b=21.446(3), c=14.349(4) Å, β= 104.4(5)°, Z=8 (monomers) and D_c=1.485 g/cm³. The final R value for this complex was 0.053 for 3033 reflections with I 2σ(I). This structure contains a monomeric [Cu(BnAO-H)H₂O]⁺ ion and a dimeric [(Cu(BnAO-H))₂]²⁺ ion, having intramolecular O···O hydrogen bonds of 2.421(5) and 2.531(5) Å, respectively. The copper(II) ions have square-pyramidal coordination with the axial positions occupied by an oxygen of the water of hydration in the monomer and by an oxime oxygen atom in the dimer. A center of symmetry relates the two halves of the dimer. The copper atom in each case is out of the plane of the four nitrogen atoms toward the axial site. The copper(II) complex is unusual in that the crystal contains both a monomer and a dimer.     

Synthesis,characterization and crystal structure of 2-dimethylacetal-4-chloro-6-formylphenol and aquabis(2-dimethylacetal-4-chloro-6-formylphenolato)dioxouranium(VI)

The ligand 2-dimethylacetal-4-chloro-6-formylphenol, H(ALAC), prepared by boiling 2,6-diformyl-4-chlorophenol, H(DIAL), in methanol, was reacted with uranyl acetate to obtain the complex [UO₂(ALAC)₂(H₂O)]. The ligand and the uranyl complex were characterized by X-ray crystallography, infrared, ¹H NMR and electronic spectroscopy. Thermogravimetric and mass spectrometry data are also reported. In acid media H(ALAC) transforms easily into H(DIAL). H(ALAC) is monoclinic, P2₁/n, with a=13.951(5), b=7.902(5), c=9.465(5) Å, β= 91.33(3)°. The structure was refined to R=3.9%, based on 1657 observed reflexions. [UO₂(ALAC)₂(H₂O)] is tetragonal, P4₃2₁2, with a=11.147(5) and c=19.150(4) Å. The structure was refined to R=4.0%, based on 2938 observed reflexions. Four ligand oxygens and one water molecule are equatorially bonded to the uranyl group in this compound. Uranium and water oxygen lie in special positions on a crystallographic twofold axis so that the two halves of this molecule are symmetrically related. Selected bond distances for [UO₂(ALAC)₂(H₂O)] are: UO (charged) 2.28(2) Å, UO (neutral) 2.45(2) Å, UO (uranyl) 1.77(2) Å, UO (water) 2.44(4) Å.     

Synthesis, crystal structure and esterification of a novel iron(III) 18-metallacrown-6 complex

The trianionic heptadentate ligand, (Z)-3-(5′-chlorosalicylhydrazinocarbonyl) propenoic acid, has been synthesized and reacted with FeCl₃·6H₂O, to produce the complex [Fe^III₆(C₁₂H₈N₂O₅Cl)₆(H₂O)₄(CH₃OH)₂]·8H₂O·4CH₃OH. In the self-assembly process the ligand was esterified and transferred into (Z)-methyl 3-(5′-chlorosalicylhydrazinocarbonyl) propenoate. In the crystal structure, the neutral Fe(III) complex contain a 18-membered metallacrown ring consisting of six Fe(III) and six trianionic ligands. The 18-membered metallacrown ring is formed by the succession of six structural moieties of the type [Fe(III)-N-N]. Due to the meridional coordination of the ligands to the Fe³⁺ ions, the ligands enforce the stereochemistry of the Fe³⁺ ions as a propeller configuration with alternating Λ/Δ forms. The metallacrown can be treated with SnCl₂ or Zn powder to obtain purified ester.     

Substrate specificity of a recombinant d‐lyxose isomerase from Serratia proteamaculans that produces d‐lyxose and d‐mannose

Aims: Characterization of substrate specificity of a d ‐lyxose isomerase from Serratia proteamaculans and application of the enzyme in the production of d ‐lyxose and d ‐mannose. Methods and Results: The concentrations of monosaccharides were determined using a Bio‐LC system. The activity of the recombinant protein from Ser. proteamaculans was the highest for d ‐lyxose among aldoses, indicating that it is a d‐ lyxose isomerase. The native recombinant enzyme existed as a 54‐kDa dimer, and the maximal activity for d‐ lyxose isomerization was observed at pH 7·5 and 40°C in the presence of 1 mmol l^?1 Mn²⁺. The K_m values for d ‐lyxose, d ‐mannose, d ‐xylulose, and d ‐fructose were 13·3, 32·2, 3·83, and 19·4 mmol l^?1, respectively. In 2 ml of reaction volume at pH 7·5 and 35°C, d ‐lyxose was produced at 35% (w/v) from 50% (w/v) d ‐xylulose by the d‐ lyxose isomerase in 3 h, while d ‐mannose were produced at 10% (w/v) from 50% (w/v) d ‐fructose in 5 h. Conclusions: We identified the putative sugar isomerase from Ser. proteamaculans as a d ‐lyxose isomerase. The enzyme exhibited isomerization activity for aldose substrates with the C2 and C3 hydroxyl groups in the left‐hand configuration. High production rates of d‐ lyxose and d ‐mannose by the enzyme were obtained. Significance and Impact of the Study: A new d‐ lyxose isomerase was found, and this enzyme had higher activity for d ‐lyxose and d ‐mannose than previously reported enzymes. Thus, the enzyme can be applied in industrial production of d ‐lyxose and d ‐mannose.     

Synthesis, structural characterization and electrochemical activity of oxidovanadium(IV/V) complexes of a diprotic ONS chelating ligand

The present work reports the chemistry of a few oxidovanadium(IV) and (V) complexes of the ONS chelating ligand S-benzyl-β-N-(2-hydroxyphenylethylidine) dithiocarbazate (H₂L). Major objective of this work is to arrive at some general conclusions about the influence of binding environment generated by the replacement of an O-donor center by a S-donor point in a ligand (of a similar arrangement of the other O- and N-donor points) on the redox behavior and on the structural features of comparable [VO(OEt)(ONS)] and [VO(OEt)(ONO)] complexes. Synthesis, characterization by various physicochemical techniques (UV-Vis, IR, EPR and elemental analysis), exploration of electrochemical activity of the oxidovanadium(V) complex [V^VO(OEt)L] (1), the mixed ligand complex [V^VO(N-O)L] (3) (where N-O is the mono anion of 8-hydroxyquinoline) and a binuclear complex [V^VO(OEt)L]₂(μ-4,4′-bipy) (2) are reported. Similar studies on of mixed ligand oxidovanadium(IV) complexes of the formula [V^VO(N-N)L] (4,5) (where N-N = 2,2′-bipy and o-phen) are also presented here. The [V^VO(OEt)L] complex is pentacoordinated and distorted square pyramidal, while the [V^IV(N-N)L] complexes are hexacoordinated and octahedral. Structural features of the complex 1 were compared with the corresponding aspects of the previously reported analogous complex [V^VO(OEt)(ONO)] (1′).     

Iron(III) induced 2-phenyl imidazolidine ring hydrolysis of a new binucleating Schiff base ligand: X-ray structure of the mononuclear Fe(NNO)2 end product

The reaction of triethylenetetramine, salicylaldehyde and benzaldehyde in 1:2:1 mole ratio in methanol at room temperature affords a novel μ-bis(tridentate) ligand H₂L′ through the formation of an imidazolidine ring within the parent hexadentate precursor in a two step reaction. The ligand H₂L′ reacts with Fe(ClO₄)₂ · 6H₂O in aqueous methanol in the presence of triethylamine to form the mononuclear [Fe^IIIL](ClO₄) complex, (where L²⁻ is the anion of the parent hexadentate H₂saltrien ligand) after the cleavage of the imidazolidine ring. The mononuclear complex has a structure with an N₄O₂ donor atom set of the hexadentate ligand forming a distorted octahedral coordination geometry around the metal atom as established from a crystal structure determination. The Fe-N(imine) distances are 1.934(10) and 1.948(9) Å, Fe-N(amine) distances are 2.062(8) and 2.076(9) Å and Fe-O(phenol) distances are 1.864(8) and 1.872(7) Å. The terminal oxygen donor atoms occupy cis positions and the remaining four nitrogen atoms (two cis amine and two trans imine) complete the coordination sphere. The mononuclear complex has a magnetic moment 1.89 μ_B corresponding to the low-spin 3d⁵ configuration. The UV-Vis spectrum of the end product, after the imidazolidine ring hydrolysis, is different from the spectrum of the initial reaction mixture containing the μ-bis(tridentate) ligand H₂L′.     

Copper(II) assisted hydrolysis of 2,4,6-tris(pyrazol-1-yl)-1,3,5-triazine. Crystal and molecular structure of catena-[CuL(H2O)Cl]n (L = 2,4-dione-1,3,5-(1H)-triazin-1-amido)

This article describes the partial hydrolysis of the multidentate ligand 2,4,6-tris(pyrazol-1-yl)-1,3,5-triazine in the presence of copper(II), to give the anionic ligand 2,4-dione-1,3,5-(1H)-triazin-1-amido, which was isolated as the cupric complex catena-[CuL(H₂O)Cl]_n, where L is the amido ligand. No other hydrolysis products were isolated or identified.The complex defines a zigzag 1D covalent chain, along the b cell axis, through apical copper-oxygen bonds (Cu-N-C-O···Cu bridges).     

Synthesis, crystal structure and electroluminescent properties of a Schiff base zinc complex

A new complex of zinc with a Schiff base, zinc(N,N′-bis(salicylidene)-3, 6-dioxa-1, 8-diaminooctane monohydrate) (ZnBSO · H₂O), was synthesized and characterized by means of elemental analyses, IR spectra and DTA-TG. Its structure was determined by X-ray single crystal analysis. It was demonstrated that the zinc atom is coordinated by the two oxygen atoms in phenolate and two nitrogen atoms in imine of the ligand in a slightly distorted tetrahedral geometry, while the two oxygen atoms from the oxa-alkyl chain are not coordinated to Zn(II) atom. The energy levels of the HOMO, LUMO and the electrochemical band gap were determined by cyclic voltammeter. The electroluminescent devices with the complex as the emitter showed bright blue emission with a peak at 450 nm, which is same as the fluorescence of the complex in both solution and solid states.     

Preparation and crystal structure of bis(acetato)(trans-1,2-diaminocyclohexane)platinum(II)

The structure of the complex [Pt(trans-1,2-di- aminocyclohexane) (acetate)₂]·H₂O has been determined by X-ray diffraction. This racemic compound is orthorhombic, space group Aba2, a = 20.813(9), b = 7.926(5), c = 17.296(8) Å, Z = 8. The structure was refined on 1214 nonzero Cu Kα reflections to R = 0.028. The square planar environment of Pt includes the amino groups of the diamine in cis positions and oxygens from two monodentate acetates. The PtN and PtO distances average 2.00(3) and 2.02(3) Å, respectively. The bite of the diamine ligand imposes a NPtN angle of 85(1)°, whereas the small OPtO angle of 85(1)° probably results from packing effects. The average plane through the puckered cyclohexyl ring makes an angle of 19° with the PtN₂O₂ plane. The molecules are stacked by pairs along the b axis. The two molecules of each pair are 180° apart about the stacking axis, and form altogether four NH···O hydrogen bonds.     

A new tricarbonyl fac-[M(acac)(isc)(CO)3] complex (M = Re, Tc) with acetylacetonate (acac) and isocyanide (isc) in a 2+1 combination

The synthesis and characterization of the neutral 2+1 mixed ligand complex fac-Re(CO)₃(acac)(isc) (4) with acetylacetonate (acac) as the bidentate ligand and an isocyanide (the isocyanocyclohexane, isc) as the monodentate ligand is described. The synthesis of 4 proceeds through the intermediate formation of the fac-Re(acac)(H₂O)(CO)₃ precursor complex 2. Complex 4 was characterized by elemental analysis, spectroscopic methods, and X-ray crystallography showing a distorted octahedral arrangement of the ligands around Re. At technetium-99m level, the corresponding fac-^99mTc(acac)(isc)(CO)₃ complex 5 was obtained in high yield by reacting the fac-^99mTc(acac)(H₂O)(CO)₃ precursor complex 3 with isocyanocyclohexane and its structure was established by chromatographic comparison with the prototypic rhenium complex using high performance liquid chromatography.     

The formation of a Cu(II)-amikacin complex and its biological activity and uses. Indirect estimation of amikacin by atomic absorption spectroscopy (AAS)

The [Cu(amikacin)(H₂O)₃] complex was prepared and characterized by elemental analysis, TGA and spectroscopic techniques (viz. IR, electronic and EPR spectra). The spectral results obtained indicate distorted octahedral geometry around the Cu(II) ion. The orbital reduction factors K∥ and K⊥ have been calculated. Amikacin can be estimated indirectly by atomic absorption spectroscopy using carbonate as an auxiliary ligand. The complex shows biological activity towards six organisms. Amikacin is biologically active towards Sarcina lutea, whereas the Cu(II)-amikacin complex is biologically inactive.     

Steric and counterion effects on the structure of dipicolylamine nickel complexes

Four nickel complexes each containing an R-2,2′-dipicolylamine ligand species (RDPA; R = benzyl, isopropyl, or tert-butyl) were synthesized and structurally characterized. In the absence of an interfering coordinating counterion, BzDPA and iPrDPA form 1:2 nickel:ligand complexes, with two facial ligands completing an pseudooctahedral nickel(II) coordination environment. In contrast, the sterically hindered tBuDPA ligand instead forms 1:1 metal:ligand complexes, even in the absence of associating counterions. Two novel tBuDPA nickel complexes with different counterions are described: nickel(II) chloride gives rise to an unusual 2Ni-3Cl dimer complex, while nickel(II) nitrate affords a 1:1 nickel:ligand complex which crystallizes with both fac and mer conformations in the same unit cell.     

Study on potential antitumor mechanism of a novel Schiff base copper(II) complex: synthesis, crystal structure, DNA binding, cytotoxicity and apoptosis induction activity

A new cytotoxic copper(II) complex with Schiff base ligand [Cu^II(5-Cl-pap)(OAc)(H₂O)]·2H₂O (1) (5-Cl-pap = N-2-pyridiylmethylidene-2-hydroxy-5-chloro-phenylamine), was synthesized and structurally characterized by X-ray diffraction. Single-crystal analysis revealed that the copper atom shows a 4 + 1 pyramidal coordination, a water oxygen appears in the apical position, and three of the basal positions are occupied by the NNO tridentate ligand and the fourth by an acetate oxygen. The interaction of Schiff base copper(II) complex 1 with DNA was investigated by UV-visible spectra, fluorescence spectra and agarose gel electrophoresis. The apparent binding constant (K_app) value of 6.40 × 10⁵ M^− 1 for 1 with DNA suggests moderate intercalative binding mode. This copper(II) complex displayed efficient oxidative cleavage of supercoiled DNA, which might indicate that the underlying mechanism involve hydroxyl radical, singlet oxygen-like species, and hydrogen peroxide as reactive oxygen species. In addition, our present work showed the antitumor effect of 1 on cell cycle and apoptosis. Flow cytometric analysis revealed that HeLa cells were arrested in the S phase after treatment with 1. Fluorescence microscopic observation indicated that complex 1 can induce apoptosis of HeLa cells, whose process was mediated by intrinsic mitochondrial apoptotic pathway owing to the activation of caspase-9 and caspase-3.