Correlation analysis between arbuscular mycorrhizal fungal community and host plant phylogeny

 为弄清丛枝菌根(arbuscular mycorrhiza, AM)真菌群落随宿主植物演化的变异规律,通过对MaarjAM数据库进行数据挖掘, 根据每个分子虚拟种(virtual taxa, VT)包含的DNA序列不少于5条的标准, 筛选出188种菌根植物。通过分析植物与其根内AM真菌的关系发现: AM真菌的物种丰富度随着寄主植物的分化而增加; 在不同的植物系统类群中, AM真菌的物种丰富度显著不同; 在起源时间较晚的被子植物和裸子植物中, AM真菌的物种丰富度显著高于起源较早的苔类、角苔类和蕨类植物类群, 而与寄生植物共生的AM真菌物种丰富度与早期植物无显著差异; 不同寄主植物进化类群间AM真菌组成差异显著。以上结果表明: AM真菌群落随着寄主植物进化而发生变化。在进化过程中, 寄主植物倾向于选择保留共生效率较高的AM真菌。     

丛枝菌根真菌群落与植物系统发育的相关性分析

为弄清丛枝菌根(arbuscular mycorrhiza, AM)真菌群落随宿主植物演化的变异规律,通过对MaarjAM数据库进行数据挖掘, 根据每个分子虚拟种(virtual taxa, VT)包含的DNA序列不少于5条的标准, 筛选出188种菌根植物。通过分析植物与其根内AM真菌的关系发现: AM真菌的物种丰富度随着寄主植物的分化而增加; 在不同的植物系统类群中, AM真菌的物种丰富度显著不同; 在起源时间较晚的被子植物和裸子植物中, AM真菌的物种丰富度显著高于起源较早的苔类、角苔类和蕨类植物类群, 而与寄生植物共生的AM真菌物种丰富度与早期植物无显著差异; 不同寄主植物进化类群间AM真菌组成差异显著。以上结果表明: AM真菌群落随着寄主植物进化而发生变化。在进化过程中, 寄主植物倾向于选择保留共生效率较高的AM真菌。     

城市菌根真菌多样性、变化机制及功能应用

菌根真菌能够与大多数陆生植物的根系形成菌根共生体,具有改善宿主植物矿质营养、增强抗逆性、改良土壤结构等重要生态功能。城市化过程中气候、土壤、植被、土地利用等因素的改变,对菌根真菌的多样性产生了直接或间接的影响。目前城市菌根真菌的研究多侧重对其空间分布及群落组成的简单描述,缺乏针对城市典型生态现象及生态问题系统性的探讨。分别从城市菌根真菌的多样性变化、影响机制及功能应用等3方面进行了综述,全面揭示城市菌根真菌的研究现状及研究的复杂性,发现当前研究存在多样性评估简单化、研究层次单一化、内在机制现象化及功能应用停滞化等问题,认为今后应建立更为系统、综合、标准的研究体系以深刻而准确地认识与理解城市化对菌根真菌多样性的影响,为城市微生物资源的保存及绿地系统维持提供理论依据。     

中国南方地区松乳菇遗传多样性分析

松乳菇Lactarius deliciosus是一种对松树的生长具有重大意义的外生菌根真菌,具有很高的经济价值,因无法人工培育,过度的人工采摘造成产地生态的严重破坏。比较中国南方3个省9个不同地区的68个松乳菇的rDNA ITS区碱基序列的差异,以期研究各不同群体的ITS单倍体型多样性,不同地区群体之间的遗传关系,以及遗传分化与地理隔离的关系。遗传分析发现,得到的68个松乳菇样品的ITS序列可认定为7种单倍体型,这些单倍体型聚集为2个不同的系统进化群体,表现出两种不同的系统进化方向。7种单倍体型中,两个主     

不同喀斯特小生境中土壤丛枝菌根真菌的遗传多样性

为探明西南喀斯特地区小生境土壤中丛枝菌根真菌(AMF)的遗传多样性特征, 利用巢式PCR和变性梯度凝胶电泳相结合的分子生物学方法, 对茂兰3种植被类型下的小生境(石缝、石沟、土面) AMF遗传多样性进行了研究。结果发现: 各类小生境都含有丰富的AMF遗传多样性, 灌木林土面的多样性指数和物种丰富度最高, 为4.06和68; 次生林石缝的最低, 为3.16和29, 所研究的9个小生境多样性指数和物种丰富度的平均值分别高达3.67和48, 高于同类研究在其他地区的结果, 这可能主要与喀斯特生态系统复杂的结构和较高的植物多样性有关; 聚类分析显示各类小生境间的AMF群落结构差异显著, 相似性指数最高仅为0.45, 说明小生境所带来的空间异质性对AMF的遗传多样性产生了显著影响; 基因测序显示球囊霉属(Glomus)极有可能是喀斯特地区AMF的优势菌属, 在以后筛选喀斯特地区的高效生态恢复菌种时可重点考虑球囊霉属的一些菌种。     

接种不同AM真菌对滇重楼幼苗功能基因表达的影响

为探究接种不同外源性从枝菌根(Arbuscular mycorrhizae,AM)真菌对滇重楼幼苗基因表达的影响,本研究以灭菌土壤为生长基质,将滇重楼(Paris polyphylla var. yunnanensis)新鲜种子与28种AM真菌于室温盆栽条件下共培养,采用实时荧光定量PCR的方法检测鲨烯环氧酶基因(Squalene epoxidase,SE)、共生受体类似激酶基因(Symbiosis-receptor-like kinase,SYMRK)、产生钙离子振荡的通道蛋白基因(Doesn’t making fections 1,DMI1)、钙/钙调依赖性蛋白激酶基因(Calcium/calmodulin-dependent protein kinase,CCa MK)4个功能基因在滇重楼幼苗的差异表达情况。结果表明:28株AM菌株可不同程度的影响SE、SYMRK、DMI1、CCa MK 4个功能基因的表达,其中薄壁两性囊霉(Ambisporaleptoticha,Ale)和崔氏原囊霉(Archaeospora trappei,Atr)可以显著增加4个功能基因的表达量。隐类球囊霉(Paraglo-mus occultum,Po)和透明盾巨孢囊霉(Scutellospora pellucida,Spe)可以增加SE、SYMRK的表达,细凹无梗囊霉(Acau-lospora scrobiculata,Asc),亮色盾巨孢囊霉(Racocetra fulgida,Rfu),哥伦比亚内养囊霉(Entrophospora colombiana,Ec),明球囊霉(Rhizophagus clarus,Rcl),根内球囊霉(Rhizophagus intraradices,Rin)可以增加DMI1的表达。综上所述,接种的28株AM真菌菌株中Ale和Atr能显著的提高4种功能基因的表达,结合前期与滇重楼无菌播种幼苗进行共生培养分析AM真菌对种子萌发及幼苗化学成分的影响,推测这两株菌可望能作为培育滇重楼菌根化苗的理想菌株,人工接种AM真菌可为保护和提高滇重楼开辟了一条新的途径。     

丛枝菌根共生关系的信号机制研究进展

在植物与微生物的共生体中,最广泛的互惠共生体就是丛枝菌根.真菌在植物根系形成菌根后,菌丝通过根的皮层细胞获取植物提供的碳源,同时将矿物营养和水从土壤转运到皮层细胞,这种共生过程的研究在生物多样性的保护、陆生植物的起源与演化、退化生态系统的修复与重建以及农业、林业和园艺业的应用具有重要的意义.近年来丛枝菌根真菌与植物根系建立共生关系的信号传导途径和作用机制备受关注,也取得了突破性的进展.本文对丛枝菌根真菌与植物根系在共生关系形成、营养交换以及防御方面的分子信号和细胞方面的研究进展进行综述,并对发展前景作以展望.     

Molecular approaches to understanding mycorrhizal symbioses

Molecular analyses of plant–microbe interactions have become common place in the last two decades. Although there are philosophical considerations about the application of a reductionist approach to some areas of research, the collaborative interface (e.g. molecular ecology) can provide specialised insight to the generalist, whilst adding broader relevance to the research of the specialist. However, the expense of this discipline has tended to restrict research to work on model host–microbe interactions. Molecular techniques were embraced early on by a few pioneers from the field of mycorrhizal research. Despite some high profile research, the number of molecular mycorrhizal publications has only recently begun to escalate. However the extent of literature now has exceeded the capacity for a comprehensive short review. In this paper we will briefly discuss the use of model species for molecular research and explore the range of questions that are being addressed using molecular techniques, whilst minimising use of specific jargon, to maximise the usefulness of this review to a non specialist audience. Our primary focus is on arbuscular mycorrhizal symbiosis, to complement the papers by Tagu et al., Podila et al. and Chalot et al. (all this volume), who have addressed aspects of research on ectomycorrhizal symbioses. Here we include specific citations from research groups around the world, along with reference to more detailed reviews, to provide a taste of the current excitement in this fundamental and rapidly evolving research field.     

西藏高原不同海拔区域丛枝菌根真菌群落的变化

为了进一步了解丛枝菌根(AM)真菌群落对不同海拔环境的响应,基于孢子形态学鉴定,研究了西藏高原不同海拔区域主要草本植物AM真菌的群落特征、菌根侵染及其变化.结果表明: 藏东南低海拔区(2200~3400 m)、藏中中海拔区(3400~3900 m)和藏北高海拔区(4300~5300 m)的AM真菌分别为11属31种、11属20种和6属14种.随着海拔上升,孢子密度(r=0.978,P<0.01)、物种丰度(r=0.462,P>0.05)均趋提高,优势种、特有种比例大幅增加,Shannon指数(r=-0.945,P<0.01)极显著下降.不同海拔区之间AM真菌群落Sorensen相似性系数(0.526~0.592)较为接近,仅在总体上随海拔差异扩大略趋下降;藏东南低海拔区、藏北高海拔区菌根侵染率无显著差异,但均显著低于藏中中海拔区.各海拔区内,不同海拔梯度对AM真菌群落、根系侵染亦具显著影响,但影响程度、影响趋势因整体海拔环境不同而异.说明西藏高原AM真菌群落趋于生境选择,受控于海拔所主导的水热环境及土壤环境.     

AM真菌物种多样性:生态功能、影响因素及维持机制

AM真菌物种多样性是土壤生态系统生物多样性的重要组分之一。尽管对AM真菌多样性已有多年研究,但是,已有研究绝大多数仅停留在对AM真菌群落种属解析层面上,对AM真菌物种多样性生态功能及维持机制方面的认识较浅。从生态功能、影响因素及维持机制3个方面系统地综述了近年来AM真菌多样性领域的研究进展。认为AM真菌多样性对植物群落生产力的调控机制及结合理论与实践解析AM真菌多样性维持机制是该领域未来的重点研究方向。     

入侵植物与丛枝菌根真菌的相互作用

入侵植物的入侵改变了入侵地生物群落的结构,导致生物多样性的丧失.丛枝菌根真菌(AMF)作为陆地生态系统中土壤微生物普遍的组成部分,它的种类和组成能够影响入侵植物的生长表现.这种真菌与寄主(入侵植物)特殊的关系也暗示了AMF能够影响入侵植物的入侵.反之,入侵植物的入侵同样也会影响AMF的群落结构和功能.本文在简要总结我国入侵植物种类及其危害的基础上,着重探讨了AMF与入侵植物入侵之间的关系,即AMF对入侵植物入侵过程中的作用、入侵植物入侵后如何影响AMF以及两者之间的相互作用机制.     

Symbiotic soil fungi enhance ecosystem resilience to climate change

Substantial amounts of nutrients are lost from soils through leaching. These losses can be environmentally damaging, causing groundwater eutrophication and also comprise an economic burden in terms of lost agricultural production. More intense precipitation events caused by climate change will likely aggravate this problem. So far it is unresolved to which extent soil biota can make ecosystems more resilient to climate change and reduce nutrient leaching losses when rainfall intensity increases. In this study, we focused on arbuscular mycorrhizal (AM) fungi, common soil fungi that form symbiotic associations with most land plants and which increase plant nutrient uptake. We hypothesized that AM fungi mitigate nutrient losses following intensive precipitation events (higher amount of precipitation and rain events frequency). To test this, we manipulated the presence of AM fungi in model grassland communities subjected to two rainfall scenarios: moderate and high rainfall intensity. The total amount of nutrients lost through leaching increased substantially with higher rainfall intensity. The presence of AM fungi reduced phosphorus losses by 50% under both rainfall scenarios and nitrogen losses by 40% under high rainfall intensity. Thus, the presence of AM fungi enhanced the nutrient interception ability of soils, and AM fungi reduced the nutrient leaching risk when rainfall intensity increases. These findings are especially relevant in areas with high rainfall intensity (e.g., such as the tropics) and for ecosystems that will experience increased rainfall due to climate change. Overall, this work demonstrates that soil biota such as AM fungi can enhance ecosystem resilience and reduce the negative impact of increased precipitation on nutrient losses.     

Diversity of arbuscular mycorrhizal fungi along a sand dune stabilization gradient: A case study at Praia da Joaquina, Ilha de Santa Catarina, South Brazil

Species diversity of arbuscular mycorrhizal fungi (AMF) was assessed along a dune stabilization gradient (embryonic dune, foredune and fixed dune) at Praia da Joaquina, Ilha de Santa Catarina. The dunes were chosen as a case study to assess whether diversity and mycorrhizal inoculum potential (MIP) increase along the gradient. Ten soil samples were collected from each stage and pooled, and then six 100-g soil sub-samples were taken to identify and enumerate spores. Twelve AMF species were detected, and all three families in Glomales were represented. Gigasporaceae species dominated the embryonic dune, while Glomaceae species dominated the fixed dune. Total spore numbers and richness increased as the dunes became more stabilized. However, indices of Margalef, Simpson and Shannon reached maximal values at different stages, suggesting that species abundance was different among stages. In both embryonic and fixed dunes, species abundance data fit the broken stick model, while in the foredune the log series model best described the data. The MIP followed spore numbers and increased along the gradient, suggesting that spores are important in initiating root colonization in this system. Relationships between edaphic factors and functional roles of Glomales families as determinants of AMF distribution are discussed. This document was subjected to peer and administrative reviews of the U.S. EPA at the National Health and Environmental Effects Research Laboratory, Western Ecology Division, and was approved for publication. Mention of trade names or commercial products in this paper does not constitute endorsement or recommendation of use.     

The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions

As obligate symbionts of most land plants, arbuscular mycorrhizal fungi (AMF) have a crucial role in ecosystems, but to date, in the absence of genomic data, their adaptive biology remains elusive. In addition, endobacteria are found in their cytoplasm, the role of which is unknown. In order to investigate the function of the Gram-negative Candidatus Glomeribacter gigasporarum, an endobacterium of the AMF Gigaspora margarita, we sequenced its genome, leading to an ∼1.72-Mb assembly. Phylogenetic analyses placed Ca. G. gigasporarum in the Burkholderiaceae whereas metabolic network analyses clustered it with insect endobacteria. This positioning of Ca. G. gigasporarum among different bacterial classes reveals that it has undergone convergent evolution to adapt itself to intracellular lifestyle. The genome annotation of this mycorrhizal-fungal endobacterium has revealed an unexpected genetic mosaic where typical determinants of symbiotic, pathogenic and free-living bacteria are integrated in a reduced genome. Ca. G. gigasporarum is an aerobic microbe that depends on its host for carbon, phosphorus and nitrogen supply; it also expresses type II and type III secretion systems and synthesizes vitamin B12, antibiotics- and toxin-resistance molecules, which may contribute to the fungal host''s ecological fitness. Ca. G. gigasporarum has an extreme dependence on its host for nutrients and energy, whereas the fungal host is itself an obligate biotroph that relies on a photosynthetic plant. Our work represents the first step towards unraveling a complex network of interphylum interactions, which is expected to have a previously unrecognized ecological impact.     

丛枝菌根真菌对大气CO2浓度升高和增温响应研究进展

全球变化深刻影响着陆地生态系统生物多样性及生态功能。丛枝菌根(AM)真菌可与绝大多数陆生植物根系形成互惠共生体,在协助宿主养分吸收、促进植物生长、维持植物多样性等方面发挥着重要作用。本文主要分析了大气CO₂浓度升高(eCO₂)和增温对森林和草地生态系统AM真菌群落组成及其功能的影响。eCO₂主要通过影响宿主植物、土壤碳(C)输入等方式间接影响AM真菌,可增加AM真菌的多度和活性,影响AM真菌的多样性与群落组成。增温可直接或间接地(通过宿主植物和土壤途径)影响AM真菌,显著改变森林土壤AM真菌的群落组成,但对草地土壤AM真菌群落组成的影响尚无定论。我们提出了当前研究中存在的主要问题及未来应重点关注的内容。本文旨在明晰AM真菌对eCO₂和增温的响应和适应,增进对AM真菌介导的土壤生态功能的认识,为利用AM真菌缓解全球变化、增强土壤功能的韧性和全球变化的生态系统适应性提供依据。