‘Steps’ to Agency: Gregory Bateson,Perception, and Biosemantics

Gregory Bateson was welcomed into Biosemiotics as one of its precursors along with C. S. Peirce and Jacob von Uexküll He certainly endorsed Peirce pragmatic concern with learning as an essential characteristic of mammalian life, and also endorsed von Uexküll’s notion that the fundamental unit of animate existence is organism plus econiche. But he was at odds both with the subjectivism and with the cognitivism that connects Peirce to von Uexküll. Bateson rests his case on information theory which, he believes replaces many metaphysical notions that were the background to Peirce and von Uexküll’s approaches to ‘meaning.’ His idea of cybernetic ‘feedback’ in information circuits or networks yields a new understanding of recursiveness. Yet biofeedback in mammalian interaction had to be wrestled away from technical cybernetics and its thermodynamic rules about information, for the latter payed no attention to ‘meaning’ (“Bioentropy” section). Of the contrasts between Peirce and Bateson, the most significant is that Bateson regards ‘difference’ as primary to perception, while Peirce is concerned with continuity as primary from perception to cognition. This contrast is at the heart of Bateson’s Korzybski Lecture (see “On the Title of ‘Steps’” section), and shows how ‘difference’ in Learning develops orders and levels (see “Memory and Learning” section) leading to different categories of learning. With regard to perception, Bateson argues that the processes of perception do not bind perception to conscious awareness in any exclusive sense. Further, patterns of perception are not bounded by the skin for they include all external pathways along which information can travel. This recursive activity develops ‘agency’ (“Perception and Consciousness” section). We are ourselves interact with living mental ‘things’ but interactions with animate ‘creatura,’ is not the same as the objective interactions we purse in measuring inanimate material ‘things’ (pleroma) (“How Bioentropy Informs Bateson’s Notions of Pleroma and Creatura ” section). The grasping of context in communicative interaction, for example, is unique to creatura (“Context in Recursive Communication” section). Recognition of ‘difference’ occurs through communicative interactions and is meta-physical (without dimension). The pattern of interaction is the ‘thing,’ and ostensive aspects of communication are contextual, inclusive of all ‘external’ aspects vital for interpretation of ‘signals’ between initiators and responders to messages. Towards the end of his life, Bateson’s concerns with non-human conditions of ‘meaning’ and ‘mind’ in nature, resulted in his dropping several of the Peirce’s conditions of semiosis, as he looks at ‘meaning’ without language. He rests his method the propositional order of Peirce’s abduction rather than the latter’s full array of abduction, induction and deduction. Bateson is supported by the Biosemantics of Ruth Millikan, this paper will argue, who also believes that the derivation of meaning in animals through natural signs requires the stripping away of any ‘meaning rationalism’ (“Meaning Rationalism” section). Together they provide joint conclusions about as sign use in the ecosystems of creatura (“Conclusion” section).     

Roles of nitrogen and phosphorus in growth responses and toxin production (using LC-MS/MS) of tropical <Emphasis Type="Italic">Microcystis ichthyoblabe</Emphasis> and <Emphasis Type="Italic">M. flos-aquae</Emphasis>

In experiments investigating nutrient effects on tropical Microcystis, increasing nitrogen and phosphorus concentrations were found to have a significant positive effect on maximum cell yields of two strains of Microcystis ichthyoblabe (from Lower Peirce and Tengeh Reservoirs) and one strain of Microcystis flos-aquae isolated (Lower Peirce Reservoir) from Singapore. However, only increasing nitrogen concentration had a positive effect on growth rates of M. ichthyoblabe and M. flos-aquae from Lower Peirce Reservoir. MC-RR and MC-LR were produced by all three strains with MC-RR being the dominant variant. Phosphorus played an important role in MC production with increases in phosphorus from medium to high concentrations leading to decreases in MC-RR cell quotas for all three strains at the two highest nitrogen levels tested. The different growth and toxin production responses between M. ichthyoblabe strains could be due to location-specific differences.     

New species of avian Hepatozoon (Apicomplexa: Haemogregarinidae) and a re-description of Hepatozoon neophrontis (Todd & Wohlbach, 1912) Wenyon, 1926

Seven new species of avian Hepatozoon, H. lanis, H. malacotinus, H. numidis, H. pittae, H. estrildus, H. sylvae and H. zosteropis, respectively, are described from the Laniinae, Malaconotinae, Numidinae, Pittidae, Poephilinae, Sylviinae and Zosteropidae. Hepatozoon adiei Hoare, 1924 is synonymised with Hepatozoon neophrontis (Todd &; Wolbach, 1912) Wenyon, 1926 from the Accipitridae and H. neophrontis re-described. Four species of Hepatozoon described by de Beaurepaire Aragão from Brazil are reviewed and Hepatozoon tanagrae (de Beaurepaire Aragão, 1911) Hoare, 1924 is synonymised with H. rhamphocoeli (de Beaurepaire Aragão, 1911) Hoare 1924 and H. brachyspizae (de Beaurepaire Aragão) Hoare, 1924 with H. paroariae (de Beaurepaire Aragão, 1911) Hoare, 1924. Illustrations and measurements for Hepatozoon albatrossi Peirce &; Prince, 1980, H. atticorae (de Beaurepaire Aragão, 1911) Hoare, 1924 and H. parus Bennett &; Peirce, 1989 are also presented to complete the review of the known avian species. The value of some potential morphological characteristics for distinguishing species of Hepatozoon is discussed.     

Plato and Peirce on Likeness and Semblance

In his well-known essay, ??What Is a Sign???(CP 2.281, 285) Peirce uses ??likeness?? and ??resemblance?? interchangeably in his definition of icon. The synonymity of the two words has rarely, if ever, been questioned. Curiously, a locus classicus of the pair, at least in F. M. Cornford??s English translation, can be found in a late dialogue of Plato, namely, the Sophist. In this dialogue on the myth and truth of the sophists?? profession, the mysterious ??stranger??, who is most likely Socrates?? persona, makes the famous distinction between eikon (likeness) and phantasma (semblance) (236a,b). For all his broad knowledge in ancient philosophy, Peirce never mentioned this parallel; nor has any Peircean scholar identified it. There seems to be little problem with eikon as likeness, but phantasma may give rise to a puzzle which this paper will attempt to solve. Plato uses two pairs of words: what eikon is to phantasma is eikastikén (the making of likeness [235d]) to phantastikén (semblance making [236c]). In other words, icons come into being because of the act of icon-making, which is none other than indexicality. Witness what Peirce says about the relationship between photographs and the objects they represent: ??But this resemblance is due to the photographs having been produced under such circumstances that they were physically forced to correspond point by point to nature.?? (Ibid.) Thus the iconicity which links the representamen (sign) and its object is made possible not only by an interpretant, but also by idexisation. Their possible etymological and epistemological links aside, the Peircean example of photographing and the Platonic discussion of painting and sculpturing in the Sophist, clearly show the physio-pragmatic aspect of iconicity. The paper will therefore reread the Peircean iconicity by closely analysing this relatively obscure Platonic text, and by so doing restore to the text its hidden semiotic dimension.     

Postnatal development in Andersen's leaf-nosed bat Hipposideros pomona: flight, wing shape, and wing bone lengths

Postnatal changes in flight development, wing shape and wing bone lengths of 56 marked neonate Hipposideros pomona were investigated under natural conditions in southwest China. Flight experiments showed that pups began to flutter with a short horizontal displacement at 10 days and first took flight at 19 days, with most achieving sustained flight at 1 month old. Analysis of covariance on wingspan, wing area, and the other seven wing characteristics between ‘pre-flight’ and ‘post-volancy’ periods supports the hypothesis that growth had one ‘pre-flight’ trajectory and a different ‘post-volancy’ trajectory in bats. Wingspan, handwing length and area, armwing length and area, and total wing area increased linearly until the age of first flight, after which the growth rates decreased (all P < 0.001). Wing loading declined linearly until day 19 before ultimately decreasing to adult levels (P < 0.001). Additionally, the relationship of different pairwise combinations of bony components composing span-wise length and chord-wise length was evaluated to test the hypothesis that compensatory growth of wing bones in H. pomona occurred in both ‘pre-flight’ and ‘post-volancy’ periods. The frequency of short-long and long-short pairs was significantly greater than that of short-short, long-long pairs in most pairs of bone elements in adults. The results indicate that a bone ‘shorter than expected’ would be compensated by a bone or bones ‘longer than expected’, suggesting compensatory growth in H. pomona. The pairwise comparisons conducted in adults were also performed in young bats during ‘pre-flight’ and ‘post-volancy’ periods, demonstrating that compensatory growth occurred throughout postnatal ontogeny.     

Autopoiesis, Life, Mind and Cognition: Bases for a Proper Naturalistic Continuity

The strong version of the life-mind continuity thesis claims that mind can be understood as an enriched version of the same functional and organizational properties of life. Contrary to this view, in this paper I argue that mental phenomena offer distinctive properties, such as intentionality or representational content, that have no counterpart in the phenomenon of life, and that must be explained by appealing to a different level of functional and organizational principles. As a strategy, and following Maturana’s autopoietic theory of cognition, I introduce a conceptual distinction between mind and cognition. I argue that cognition corresponds to the natural behaviour that every living being exhibits in the realization of its existence, and that, viewed in that way, cognition is a dynamic process of structural coupling that, unlike mental phenomena, involves no representational contents. On the basis of this distinction, I try to show that while life suffices for cognition, it does not suffice for mind. That is, that the strong continuity is not between life and mind but between life and cognition.     

Dynamic Scaling in the Growth of a Non-Branching Plant,Cardiocrinum cordatum

We investigated whole-plant leaf area in relation to ontogenetic variation in leaf-size for a forest perennial herb, Cardiocrinum cordatum. The 200-fold ontogenetic variability in C. cordatum leaf area followed a power-law dependence on total leaf number, a measure of developmental stage. When we normalized for plant size, the function describing the size of single leaves along the stem was similar among different-sized plants, implying that the different-sized canopies observed at different times in the growth trajectory were fundamentally similar to each other. We conclude that the growth trajectory of a population of C. cordatum plant leaves obeyed a dynamic scaling law, the first reported for a growth trajectory at the whole-plant level.     

On the Diversity of Environmental Signs: a Typological Approach

Environmental signs as physically manifested signs that we and other animals perceive and interpret in the natural environment are seldom focused on in contemporary semiotics. The aim of the present paper is to highlight the diversity of environmental signs and to propose a typology for analysing them. Combining ecosemiotics and the pragmatist semiotics of C. Peirce and C. Morris, the proposed typology draws its criteria from the properties of the object and the representamen of the sign, and of their relationships. The analysis distinguishes eight basic types of environmental signs and provides examples of these from the natural environment. The typology also integrates existing concepts of environmental affordances, ecofields, phonetic syntax, sign fields, ecological codes, meta-signs and others. In addition to basic types of environmental signs, compound environmental signs are discussed with three types of these distinguished: (1) environmental meta-signs; (2) ecological codes; and (3) environmental-cultural hybrid signs. Further study of compound environmental signs could lead to reconceptualising relations between linguistic and pre-linguistic semiosis.     

An overview on the natural enemies of Rhynchophorus palm weevils,with focus on R. ferrugineus

Rhynchophorus palm weevils are large insects belonging to the family Dryophthoridae. All Rhynchophorus species are polyphagous and have a similar life history but some are major pests because of the serious economic damage they cause, in particular to several species of the family Arecaceae. Here we review the natural enemies of Rhynchophorus species in both their native and introduced regions of the world, to assess the possibility of biological control of this taxon. Moreover, particular attention is paid to the well-studied and harmful species Rhynchophorus ferrugineus, about which more information is available, and to its natural enemies in the Mediterranean region, because the impact of this pest in this recently colonized area is particularly remarkable and also the recent trend in species management is looking for indigenous natural enemies.More than 50 natural enemies have been reported to attack Rhynchophorus species, even if most of them are associated to R. ferrugineus (Olivier), highlighting the lack of information on the other species of the genus. Pros and cons of all the biological control agents are then discussed: among the considered organisms, fungi are noteworthy to be considered for inclusion in integrated pest management programs.Overall, our overview underlines the need to increase knowledge on natural enemies of all the species of the genus Rhynchophorus, to isolate more virulent strains and to determine the optimum conditions for the actions of the biocontrol agents.     

Le psychothérapeute psychanalyste « à <Emphasis Type="Italic">l’école de la phénoménologie</Emphasis> »

The mixing of psychoanalysis and phenomenology fosters the development of psychotherapy, psychoanalysis drawing on phenomenology to offer a method of studying and understanding the human being; this creates a genuine form of “anthropology”. Phenomenology’s contributions to psychoanalysis revolve around the three notions of épochè, the understanding of others and transference. On the one hand, épochè (a suspension of natural states of mind, obviousness and knowledge; an eidetic reduction; and an opening to the world and others) ensures better comprehension (“to take with yourself”) of others and their existential projects. On the other hand, épochè prevents falling into the transference and countertransference traps and sets the distance necessary for the hermeneutic act, that is, the interpretation of what is no longer there, what is absent, yet said and indicated by language in psychoanalytic therapy. Through its humanist, anthropological perspective and its overall understanding of the human being, phenomenology leads the way to rethinking clinical psychotherapy to create a more unified discipline.     

Natural selection and fitness entropy in a density-regulated population

The entropy H(p_o,p*) of a population with the initial allele frequency p_o given the equilibrium polymorphic frequency p* has been proposed as a measure of natural selection. In the present paper, we have extended this concept to include a particular aspect of density-dependent selection. We compared size trajectory of a population initially at genetic equilibrium, N(t), with the size trajectories of populations not initially at p*,N(t), but which do eventually converge to a common equilibrium allele frequency and equilibrium density, N*. The following experimentally testable hyopthesis was established. The total area defined by the difference between the trajectories of N(t) and N(t) as they converge to N* is directly proportional to the fitness entropy when population size is transformed using the density-dependent fitness value. Two properties of this relationship were noted. First, it is independent of the magnitude of natural selection and, secondly, it does not depend upon the initial population density as long as the equilibrium and nonequilibrium populations have the same initial numbers. This hypothesis was evaluated with experimental data on the flour beetle Tribolium castaneum.     

Mind and matter as asymptotically disjoint,inequivalent representations with broken time-reversal symmetry

Many philosophical and scientific discussions of topics of mind-matter research make implicit assumptions, in various guises, about the distinction between mind and matter. Currently predominant positions are based on either reduction or emergence, providing either monistic or dualistic scenarios. A more-involved framework of thinking, which can be traced back to Spinoza and Leibniz, combines the two scenarios, dualistic (with mind and matter separated) and monistic (with mind and matter unseparated), in one single picture. Based on such a picture, the transition from a domain with mind and matter unseparated to separate mental and material domains can be viewed as a result of a general kind of symmetry breaking, which can be described formally in terms of inequivalent representations. The possibility of whether this symmetry breaking might be connected to the emergence of temporal directions from temporally non-directed or even non-temporal levels of reality will be discussed. Correlations between mental and material aspects of reality could then be imagined as remnants of such primordial levels. Different conceivable types of inequivalent representations would lead to correlations with different characteristics.     

Profit (p)-Index: The Degree to Which Authors Profit from Co-Authors

Current metrics for estimating a scientist’s academic performance treat the author’s publications as if these were solely attributable to the author. However, this approach ignores the substantive contributions of co-authors, leading to misjudgments about the individual’s own scientific merits and consequently to misallocation of funding resources and academic positions. This problem is becoming the more urgent in the biomedical field where the number of collaborations is growing rapidly, making it increasingly harder to support the best scientists. Therefore, here we introduce a simple harmonic weighing algorithm for correcting citations and citation-based metrics such as the h-index for co-authorships. This weighing algorithm can account for both the nvumber of co-authors and the sequence of authors on a paper. We then derive a measure called the ‘profit (p)-index’, which estimates the contribution of co-authors to the work of a given author. By using samples of researchers from a renowned Dutch University hospital, Spinoza Prize laureates (the most prestigious Dutch science award), and Nobel Prize laureates in Physiology or Medicine, we show that the contribution of co-authors to the work of a particular author is generally substantial (i.e., about 80%) and that researchers’ relative rankings change materially when adjusted for the contributions of co-authors. Interestingly, although the top University hospital researchers had the highest h-indices, this appeared to be due to their significantly higher p-indices. Importantly, the ranking completely reversed when using the profit adjusted h-indices, with the Nobel laureates having the highest, the Spinoza Prize laureates having an intermediate, and the top University hospital researchers having the lowest profit adjusted h-indices, respectively, suggesting that exceptional researchers are characterized by a relatively high degree of scientific independency/originality. The concepts and methods introduced here may thus provide a more fair impression of a scientist’s autonomous academic performance.     

Hypopulvins,novel peptaibiotics from the polyporicolous fungus Hypocrea pulvinata, are produced during infection of its natural hosts

In order to investigate the significance of antibiotics for the producing organism(s) in the natural habitat, we screened specimens of the polyporicolous fungus Hypocrea pulvinata growing on its natural hosts Piptoporus betulinus and Fomitopsis pinicola. Results showed that a particular group of nonribosomally biosynthesised antibiotic polypeptides, the peptaibiotics, which contain the nonproteinogenic marker amino acid α-aminoisobutyric acid (Aib), was produced in the natural habitat by the fungicolous producer and, consequently, released into the host. Using liquid chromatography coupled to electrospray high-resolution mass spectrometry we detected especially 19-, but also 11-, 18-, and 20-residue peptaibiotics in the five infected specimens analysed. Structures of peptaibiotics found were confirmed by analysing the peptaibiome of pure agar cultures obtained by single-ascospore isolation from the specimens. The 19-residue peptaibols were determined as deletion sequences of the trichosporins B lacking the Aib residue in position 6. Notably, 26 of the 28 peptaibiotics sequenced were novel; therefore the name ‘hypopulvins’ was introduced. Considering not only the ubiquity of both the two host species but also the highly specific association between H. pulvinata and P. betulinus/F. pinicola, and the abundance of this fungicolous species in north temperate regions of the world, a decisive role for the peptaibiotics detected in this study is predicted, which may act as mediators of the complex interactions between the basidiomycetous host and its fungicolous ascomycete ‘partner’. Structural analogies of the hypopulvins, particularly with other 18-, 19-, and 20-residue peptaibiotics, suggest that the hypopulvins are forming transmembrane ion channels and could thus support the hypothesis of a parasitic lifestyle of the fungicolous producer.     

Too much natural history, or too little?

A number of commentators have recently expressed concern about the fate of both natural history and naturalists in the modern world. In this essay I examine those concerns from a historical perspective. From this standpoint, I conclude that natural history is alive and well, but its future critically depends upon conceptual infusions from adjacent disciplines. Naturalists are proliferating rather than dying out. Copyright 2003 Published by Elsevier Ltd on behalf of The Association for the Study of Animal Behaviour.       

Biosurfactants,bioemulsifiers and exopolysaccharides from marine microorganisms

Marine biosphere offers wealthy flora and fauna, which represents a vast natural resource of imperative functional commercial grade products. Among the various bioactive compounds, biosurfactant (BS)/bioemulsifiers (BE) are attracting major interest and attention due to their structural and functional diversity. The versatile properties of surface active molecules find numerous applications in various industries. Marine microorganisms such as Acinetobacter, Arthrobacter, Pseudomonas, Halomonas, Myroides, Corynebacteria, Bacillus, Alteromonas sp. have been studied for production of BS/BE and exopolysaccharides (EPS). Due to the enormity of marine biosphere, most of the marine microbial world remains unexplored. The discovery of potent BS/BE producing marine microorganism would enhance the use of environmental biodegradable surface active molecule and hopefully reduce total dependence or number of new application oriented towards the chemical synthetic surfactant industry. Our present review gives comprehensive information on BS/BE which has been reported to be produced by marine microorganisms and their possible potential future applications.     

Antibodies to henipavirus or henipa-like viruses in domestic pigs in Ghana, West Africa

Henipaviruses, Hendra virus (HeV) and Nipah virus (NiV), have Pteropid bats as their known natural reservoirs. Antibodies against henipaviruses have been found in Eidolon helvum, an old world fruit bat species, and henipavirus-like nucleic acid has been detected in faecal samples from E. helvum in Ghana. The initial outbreak of NiV in Malaysia led to over 265 human encephalitis cases, including 105 deaths, with infected pigs acting as amplifier hosts for NiV during the outbreak. We detected non-neutralizing antibodies against viruses of the genus Henipavirus in approximately 5% of pig sera (N = 97) tested in Ghana, but not in a small sample of other domestic species sampled under a E. helvum roost. Although we did not detect neutralizing antibody, our results suggest prior exposure of the Ghana pig population to henipavirus(es). Because a wide diversity of henipavirus-like nucleic acid sequences have been found in Ghanaian E. helvum, we hypothesise that these pigs might have been infected by henipavirus(es) sufficiently divergent enough from HeVor NiV to produce cross-reactive, but not cross-neutralizing antibodies to HeV or NiV.     

The Palaeoenvironmental Impact of Prehistoric Settlement and Proto-Historic Urbanism: Tracing the Emergence of the Oppidum of Corent,Auvergne, France

Early human societies and their interactions with the natural world have been extensively explored in palaeoenvironmental studies across Central and Western Europe. Yet, despite an extensive body of scholarship, there is little consideration of the environmental impacts of proto-historic urbanisation. Typically palaeoenvironmental studies of Bronze and Iron Age societies discuss human impact in terms of woodland clearance, landscape openness and evidence for agriculture. Although these features are clearly key indicators of human settlement, and characterise Neolithic and early to Middle Bronze Age impacts at Corent, they do not appear to represent defining features of a protohistoric urban environment. The Late Iron Age Gallic Oppidum of Corent is remarkable for the paucity of evidence for agriculture and strong representation of apophytes associated with disturbance. Increased floristic diversity – a phenomenon also observed in more recent urban environments – was also noted. The same, although somewhat more pronounced, patterns are noted for the Late Bronze Age and hint at the possibility of a nascent urban area. High percentages of pollen from non-native trees such as Platanus, Castanea and Juglans in the late Bronze Age and Gallic period also suggest trade and cultural exchange, notably with the Mediterranean world. Indeed, these findings question the validity of applying Castanea and Juglans as absolute chronological markers of Romanisation. These results clearly indicate the value of local-scale palaeoecological studies and their potential for tracing the phases in the emergence of a proto-historic urban environment.