Helical vs. zigzag coordination polymer: Influence of structural preference of metal-ion coordination geometry

Two new coordination polymers [(L⁶)CoCl₂]_∞ (1) and [(L⁶)CdCl₂]_∞ (2) (L⁶ = α,α′-bis(pyrazolyl)-m-xylene) have been synthesized and characterized by X-ray crystallography. Structural analysis of 1 (space group P2₁) revealed that each Co(II) center is coordinated by two chloride ions and two pyrazole nitrogens from two different L⁶ ligands, giving rise to pseudo-tetrahedral coordination environment around Co(II). For this structure 1D helical polymeric chain running along crystallographic 2₁ axis is observed. While for 2 (space group ), each Cd(II) center is coordinated by two chloride ions, two pyrazole nitrogens from two different L⁶ ligands, and a chloride ion from the adjacent layer. It provides distorted trigonal bipyramidal geometry around Cd(II), which leads to the formation of a 2D zigzag polymer. In continuation of our recent activity on inorganic crystal engineering, from the standpoint of metal-ligand coordination chemistry and C-H?Cl₂M^II hydrogen bonding, in this work we have investigated the potential of coordination tectons1 and 2 in bringing about generality in helix/zigzag network formation, strengthened primarily by C-H?Cl hydrogen-bonding interactions.     

Oxidase studies of some benzimidazole diamide copper(II) complexes

New bis benzimidazole diamide ligands, N,N′-bis(benzimidazolyl-2-methyl)-2,2′-thiadiethanamide (GBTAA), and N,N′-bis(benzimidazolyl-2-methyl)-3,3′-thiadipropanamide (GBTPA) have been synthesised and utilised to prepare copper(II) complexes with inner sphere ligands like Cl⁻ and . One of the ligands, GBTAA, has been structurally characterised, while the other GBTPA is characterised via an unusual tetrabenzoate bridged dicopper polymeric structure wherein the ligand GBTPA bridges the two dicopper benzoate units. The coordination environment about each copper is five coordinate, while τ value is found to be 0.32 indicating a distorted square pyramidal geometry. The copper(II) complexes catalyse the quenching of superoxide radical generated electrochemically.     

New macrocyclic Schiff base complexes incorporating a phenanthroline unit: Part 1; Template synthesis of three cadmium(II) complexes and crystal structure, NMR and ab initio studies

Complexes of three Cd(II)-containing macrocyclic Schiff base complexes containing a phenanthroline ligand (L) of the type [CdLⁿ(Cl)]⁺ (n=2,3,4), have been prepared via [1+1] cyclocondensation of 2,9-dicarboxaldehyde-1,10-phenanthroline and a number of linear triamines via a metal-templated reaction and coordination features have been examined. The ligands, L, are 16-, 17-, and 18-membered pentaaza macrocycles and all the complexes incorporate a 1,10-phenanthroline unit as an integral part of their cyclic structure. The complexes have been characterized by a variety of methods including IR, ¹H, ¹³C, DEPT, COSY(H,H) and HMQC(H,C) NMR studies and MALDI mass spectrometry. The polymeric structure of was determined by X-ray crystallography, which showed that the complex cation consisted of a pentagonal bipyramidally coordinated Cd(II) ion. The seven-coordinated Cd(II) ion is ligated by the five nitrogen atoms of the macrocycle in the equatorial plane and has two bridging chloride ligands in the axial positions resulting in a ribbon of such complex ions. Supporting ab initio HF-MO calculations have been undertaken using the standard 3-21G^∗ and 6-31G^∗ basis sets.     

Synthesis, crystal structure, magnetic and redox properties of copper(II) complexes of N-alkyl(aryl) tBu-salicylaldimines

A series of novel copper(II) complexes, L₂Cu with newly synthesized 3,5--salicylaldimine (or 5--salicylaldimine) ligands derived from 2,4-di-tert-butyl phenol (or 4-tert-butyl phenol) and alkyl (aryl) amines have been prepared and their spectroscopic (IR, UV-Vis, ESI-MS), X-ray, magnetic and redox properties have been investigated. The X-ray crystallography analysis shows that all complexes are monomeric and their copper(II) centers are surrounded by phenolate oxygens and imine nitrogen atoms. Therefore, the coordination sphere around the copper atoms is N₂O₂ as seen in galactose oxidase active site. In addition, the geometric configurations of all complexes are square planar or slightly distorted square planar. The crystal system for all complexes is monoclinic, except for which is orthorhombic. The temperature dependence of magnetic susceptibility of complexes confirms the mononuclear structure of complexes. Oxidation of the Cu(II) complexes yielded the corresponding Cu(II)-phenoxyl radical species during the cyclic voltammetry experiments.     

Synthesis, structures and DNA binding of ternary transition metal complexes M(II)L with the 2,2-bipyridylamine (L = p-HB, M = Co, Ni, Cu and Zn)

New ternary transition metal complexes of formulations [Co(bpa)(p-HB)₂](bpa = 2,2′-bipyridylamine, p-HB = p-hydroxybenzenecarboxylic acid) (1), [Ni(bpa)(p-HB)(H₂O)₂]⁺(NO₃)⁻ · H₂O (2), , [Cu(bpa)(p-HB)Cl] (4) and [Zn(bpa)(p-HB)₂]₂ · 0.5H₂O (5) are prepared, their structural features are characterized by crystal structural studies, and their DNA binding propensity has been evaluated by fluorescence method. The molecular structure of complex 1 shows the six coordinate octahedral geometry with one bpa and two p-HB ligands, complex 2 is the cationic complex and has the six coordinate octahedral structure with one bpa, one p-HB and two aqua ligands, complex 3 is also the cationic complex of octahedral coordination with two bpa and one p-HB ligands, complex 4 is five coordinate distorted square pyramidal with one bpa, one p-HB and chloride ligands and complex 5 has the distorted octahedral coordination with two p-HB and one bpa ligands. In all of the complexes, both bpa and p-HB act as the bidentate N and O-donor ligands, respectively. The intermolecular H-bond networks, together with π-π interaction in their solid state are also described. The complexes show the competitive inhibition of ethidium binding to DNA, and the DNA binding propensity can be reflected as the relative order: 3 > 2 > 1 > 5 > 4, in which the cationic charged Ni(II) complexes 2 and 3 show the most effective inhibition ability.     

The structure of the 11-coordinate barium complex of the pendant-donor macrocycle 1,4,7,10-tetrakis(carbamoylmethyl)-1,4,7,10-tetraazacyclododecane: an analysis of the coordination numbers of barium(II) in its complexes

The crystal structure of [Ba(DOTAM)Cl]₂(ClO₄)₂ · 2.7H₂O, is reported, where DOTAM is 1,4,7,10-tetrakis(carbamoylmethyl)-1,4,7,10-tetraazacyclododecane [triclinic, space group, , a=937.6(2), b=1050.4(2), c=1476.6(3) pm, α=110.41(2), β=97.48(2), γ=97.75(2)°, Z=2, R=0.0423]. The structure consists of a dimer held together by four oxygen atoms bridging between the two Ba atoms. Each Ba is 11-coordinate, coordinated to four nitrogens from the macrocyclic ring, and four oxygens from the four pendant amide groups of DOTAM. In addition, each Ba has a coordinated chloride ion, as well as two bridging amide oxygens from the other member of the dimer. An analysis of the coordination numbers (CN) of Ba(II) complexes is presented. It is found that the CN of Ba(II) complexes ranges from 3 to 12, and is most commonly 9 with unidentate ligands. Higher coordination numbers of 10 and above are promoted by either polydentate ligands of denticity greater than six, or the presence of several ligands such as nitrate or acetate that form four-membered chelate rings. Lower coordination numbers of seven and below are promoted by increasingly large substitutents attached directly to the donor atoms of the ligand.     

A fluorescent ligand rationally designed to be selective for zinc(II) over larger metal ions. The structures of the zinc(II) and cadmium(II) complexes of N,N-bis(2-methylquinoline)-2-(2-aminoethyl)pyridine

The metal ion coordinating properties of the ligands N,N-bis(2-methylquinoline)-2-(2-aminoethyl)pyridine (DQPEA) and N,N-bis(2-methylquinoline)-2-(2-aminomethyl)pyridine (DQPMA) are presented. DQPEA and DQPMA differ only in that DQPEA forms six-membered chelate rings that involve the pyridyl group, whereas DQPMA forms analogous five-membered chelate rings.These two ligands illustrate the application of a ligand design principle, which states that increase of chelate ring size in a ligand will result in increase in selectivity for smaller relative to larger metal ions. The formation constants (log K₁) of DQPEA and DQPMA with Ni(II), Cu(II), Zn(II), Cd(II) and Pb(II) are reported. As expected from the applied ligand design principle, small metal ions such as Ni(II) and Zn(II) show increases in log K₁ with DQPEA (six-membered chelate ring) relative to DQPMA (five-membered chelate ring), while large metal ions such as Cd(II) and Pb(II) show decreases in log K₁ when the chelate ring increases in size. In order to further understand the steric origin of the destabilization of complexes of metal ions of differing sizes by the six-membered chelate ring of DQPEA, the structures of [Zn(DQPEA)H₂O](ClO₄)₂ (1) [triclinic, , a = 9.2906(10), b = 10.3943(10), c = 17.3880(18) Å, α = 82.748(7)°, β = 88.519(7)°, γ = 66.957(6)°, Z = 4, R = 0.073] and [Cd(DQPEA)(NO₃)₂] (2) [monoclinic, C2/c, a = 22.160(3), b = 15.9444(18), c = 16.6962(18) Å, β = 119.780(3)°, Z = 8, R = 0.0425] are reported. The Zn in (1) is five-coordinate, with a water molecule completing the coordination sphere. The Cd(II) in (2) is six-coordinate, with two unidentate nitrates coordinated to the Cd. It is found that the bonds to the quinaldine nitrogens in the DQPEA complexes are considerably stretched as compared to those of analogous TPyA (tri(pyridylmethyl)amine) complexes, which effect is attributed to the greater steric crowding in the DQPEA complexes. The structures are analyzed for indications of the origins of the destabilization of the complex of the large Cd(II) ion relative to the smaller Zn(II) ion. A possible cause is the greater distortion of the six-membered chelate ring in (2) than in (1), as evidenced by torsion angles that are further away from the ideal values in (2) than in (1). Fluorescence properties of the DQPMA and DQPEA complexes of Zn(II) and Cd(II) are reported. It is found that the DQPEA complex of Zn(II) has increased fluorescence intensity compared to the DQPMA complex, while for the Cd(II) complex the opposite is found. This is related to the greater strain in the six-membered chelate ring of the Cd(II) DQPEA complex as compared to the Zn(II) complex, with resulting poorer overlap in the Cd-N bond, and hence greater ability to quench the fluorescence in the Cd(II) complex.     

Transition metal complexes with pyrazole based ligands, part 18: new binuclear Cu(I), Cu(II) and Co(II) complexes with 3,5-dimethyl-1-thiocarboxamide pyrazole: synthesis, structural and magnetic studies

Three new binuclear metal complexes of the formulas (L = 3,5-dimethyl-1-thiocarboxamide pyrazole) have been synthesized and characterized by chemical analysis, FT-IR spectroscopy, solution conductivity, solid state magnetic measurements and X-ray single crystal and variable temperature powder diffraction. Complex 1 forms doubly chloro-bridged dimers, with Cu(II) in distorted trigonal bipyramidal coordination with the apical positions occupied by chlorine atoms. Magnetic measurements indicate an antiferromagnetic interaction between the Cu(II) centres in the dimer, with the singlet-triplet exchange parameter of J = −19.40 cm⁻¹. Complex 2 forms doubly sulfur-bridged dimers, with Cu(I) in distorted tetrahedral coordination with apical positions occupied by bromine atoms. Complex 3 is a cobalt analogue of 1. It contains dinuclear units formed by five-coordinate high-spin Co(II) in a distorted trigonal bipyramidal environment. The magnetisation of 3 shows no significant departure from Curie-Weiss behaviour between room temperature and 5 K. All crystal structures are stabilized by two-dimensional hydrogen bonding networks between the carboxamide nitrogen donors and the terminal halide acceptors.     

Coordination behaviour of ferrocenylthiosemicarbazone in a novel hetero trinuclear nickel(II) complex: Synthesis, spectral, electrochemistry and X-ray crystallography

The coordination behaviour of ferrocenylthiosemicarbazone was investigated in a trinuclear [Ni(Fctsc)₂] complex. The structure of the complex has been studied by X-ray crystallography. The complex crystallizes in rhombohedral space group with six molecules per unit cell has the dimensions of a = 28.8042(2) Å, b = 28.8042(2) Å and c = 19.5131(3) Å, α = 90°, β = 90°, γ = 120°. The electronic communication between the metal centers has been studied by cyclic voltammetry.     

Synthesis and structural investigation of vanadocene(IV) complexes of non-linear pseudohalides

Two series of vanadocene complexes of the type (Cp′ = η⁵-C₅H₅, η⁵-C₅H₄Me; X = dicyanamide, tricyanomethanide, dicyanonitrosomethanide) were prepared by the reaction of appropriate vanadocene dichloride complex with alkali salt of non-linear pseudohalide. The bonding mode of pseudohalide ligands was determined by spectroscopic measurements and X-ray diffraction analyses.     

Crystal engineering of mixed-ligand frameworks: Ligand-directed assembly and structural diversity

Four new coordination networks based on dipyridyl linkages 2,6-(N,N′-di(4-pyridyl)amino)pyridine (dpap) or 1,3-bis(4-pyridyl)propane (bpp) and different dicarboxylates have been synthesized and structurally characterized. Using dpap to react with two different dicarboxylates, maleic acid (H₂mal) and 4,4′-sulfonyldibenzoate (H₂sdba), respectively, two different two-dimensional (2D) coordination polymers of Cd(II), [Cd(dpap)(mal)]_n (1) and {[Cd(dpap)(sdba)] · 2H₂O}_n (2) were obtained. Compound 1 features a 42-membered bimetallic macrocyclic structural motif which is extended by mal groups to form a 2D network. In the case of 2, two different layers can be achieved depending on the conformation of sdba. The layer has a (8²10) net topology with Cd as nodes and dpap, sdba bridges as the connectors. The overall structure of {[Mn(dpap)(sdba)] · 1.5H₂O}_n (3) similar to that of 2 despite the presence of different metal ions. When dpap was replaced by bpp to react with Co(NO₃)₂ · 6H₂O, another 1D coordination polymer, {[Co(bpp)(H₂O)₄] · sdba}_n(4) was constructed. The 1D chains join sdba to make an overall 3D supramolecular architecture by hydrogen-bonding interactions ( (22), (12)). The Cd coordination polymers exhibit strong solid-state luminescence emission at room temperature. Thermal stability of these crystalline materials has been explored by thermogravimetric analysis of mass loss.     

Multinuclear nuclear magnetic resonance and X-ray crystallographic investigation of some mixed ligand alkylisocyanide platinum(II) complexes

Single crystal X-ray diffraction structure determination of tetra-n-butylammonium tricyanomethylisocyanideplatinate(II) (1) show that the complex does not feature stacking of the anions or significant Pt-Pt orbital interactions. The cis-dicyanobismethylisocyanideplatinum(II) (2) and cis-dicyanobisethylisocyanideplatinum(II) (3) complexes do crystallize with the platinum atoms collinear with one another but with a Pt-Pt separation distance on the order of 3.5 Å, which is too great for significant orbital overlap. In each of the complexes studied, the Pt-CNR bond lengths of the isocyanides are shorter than the Pt-CN bond lengths of the cyanide ligands. Additionally, each of these complexes have Pt-CNR bond distances marginally shorter than in the parent complex, [Pt(CNR)₄][BF₄]₂ (5). The shortened Pt-CNR distances in the mixed complexes are consistent with the isocyanide ligand being a stronger π-acid than the cyanide ligand, resulting in a preferred cis configuration of the mixed ligand complexes. In solution, the NMR spectra of these complexes are unusual because they display ¹⁹⁵Pt-¹⁴N and ¹H-¹⁴N coupling with high resolution. The NMR parameters of these complexes are compared with those of and (R = CH₃ or C₂H₅).     

Sonochemical syntheses and characterization of a new nano-structured one-dimensional lead(II) coordination polymer with 4,4,4-trifluoro-1-phenyl-1,3-butandione

A new nano-sized lead(II) one-dimensional coordination polymer with Pb?F interactions, [Pb(μ-TFPB)₂]_n (1) [TFPB⁻ = 4,4,4-trifluoro-1-phenyl-1,3-butandionate], has been synthesized and characterized by SEM, X-ray powder diffraction, IR spectroscopy and elemental analyses. The single-crystal X-ray data of compound 1 show that the Pb(II) atoms have a hemidirected coordination sphere with an environment of PbO₆F₂. The presence of a stereo-chemically active lone pair of the lead atom is apparently the reason that the neighboring bridging bond relative to gap of coordination sphere are so long. Therefore arrangement of “TFPB⁻” ligands suggests a gap or hole in coordination geometry around the lead(II) ions. PbO nanoparticles were obtained by calcination of the nano-sized compound 1 at 600 °C.     

In situ spectroelectrochemical investigation of Pt(II/IV) oxidation in aqueous solution using X-ray absorption spectroscopy

The oxidation from to in HCl aq. was studied in situ by combining electrochemistry with XAFS spectroscopy. During the oxidation of , isosbestic points were observed in Pt L_III and L_II XANES spectra as a function of time, indicating that the Pt(II/IV) redox equilibrium is the only reaction in the system. The Pt L_III and L_II X-ray absorption edge energies of the initial Pt^IICl₄²⁻ are 11562.9 and 13271.8 eV, respectively, while those of the electrolyzed species are 11564.6 and 13273.7 eV which are identical with those of a reference sample. The coordination of the electrolyzed species was characterized by structural parameters derived from the EXAFS curve fit, and identified to .     

Impact of counteranion on the self-assembly of Cd(II)-containing MOFs: Syntheses, structures and photoluminescent properties

Three Cd(II)-containing metal-organic frameworks based on 1,1′-(1,5-pentanediyl)bis-1H-benzimidazole (pbbm), namely, , [CdSO₄(pbbm)₂]_n (2) and [CdI₂(pbbm)]₂ (3) are prepared systematically by using hydrothermal technique to examine the effects of counteranion on the topology of the resultant network. In complexes 1 and 2, pbbm acts as a bidentate ligand to link two Cd atoms to result in two different 1D chain structures. Complex 3 has a dimeric structure in which two Cd(II) cations are bridged by two pbbm ligands. The significant differences of these MOFs indicate that the counteranions have great impact on the assembling and structures of the resultant MOFs. The photoluminescent properties of these new materials have been studied in the solid state at room temperature. Further investigation reveals that their photoluminescent characteristics obtained from experiments accord with the computed parameters.     

Structures and magnetic properties of one-dimensional polymers constructed with copper(II) salts and pyridinecarboxamide-type ligands

Three complexes of the composition {[Cu(μ_1,5-dca)₂(mppca)₂] · H₂O}_n (1), [Cu(μ_1,5-dca)₂(nppca)₂]_n (2) and [Cu(μ-Cl)₂(mppca)₂]_n (3) (dca = dicyanamide, ; mppca = N-(4′-methylphenyl)-4-pyridinecarboxamide; nppca = N-(4′-nitrophenyl)-4-pyridinecarboxamide) have been synthesized and characterized by single crystal X-ray crystallography and magnetic susceptibility studies. Different supramolecular structures of the complexes have been constructed by different non-covalent motifs in the crystalline solids. In complex 1, adjacent copper(II) atoms are connected by double μ_1,5-dca(end-to-end) bridges to form a chain-like structure. The chains are linked by π-π interactions and hydrogen bonds between the ligands and water molecules to form a 3D network. In complex 2, copper(II) atom has a coordination environment similar to 1, but water molecules have not been found. Weak C-H?N hydrogen bonding and π-π interaction yield a 3D supramolecular network which is different from that of complex 1. Complex 3 is a 1D polymeric chain in which Cu(II) ions are bridged by Cl⁻, and only CH/π interactions had been found. Magnetic measurements revealed antiferromagnetic properties of 1, 3 and ferromagnetic behavior of 2.     

Synthesis, structure and bonding of cadmium(II) thiocyanate systems featuring nitrogen based ligands of different denticity

Complexes catena-[di(4-amino-pyridine)di(μ-S,N-thiocyanato)cadmium(II)], , catena-[{(1-pyridine-2-yl-ethylene)-hydrazine}di(μ-S,N-thiocyanato)cadmium(II)], , and di-μ-S,N-thiocyanatobis{(N,N-diethyl-N′-(1-pyridine-2-yl-ethylidene)-ethane-1,2-diamine)(N-thiocyanato)cadmium(II)}, [Cd(NCS)(μ-SCN)(L³)]₂ (3) have been synthesized by reacting cadmium acetate/NH₄SCN with 4-amino-pyridine (L¹), C₅H₄N-C(CH₃)NNH₂ (L²), and C₅H₄N-C(CH₃)N-CH₂-CH₂-N(C₂H₅)₂ (L³), respectively, in methanol. Characterization by single-crystal X-ray crystallography shows that in compounds 1 and 2 the cadmium atoms have a 4N2S-hexa-coordination sphere, exhibiting pseudo-octahedral geometry. The cadmium atoms are bridged by two thiocyanate ions generating 1-D polymeric chains. Compound 3 is a centrosymmetric dimeric complex, with the cadmium atom pseudo octahedrally surrounded by a 5N1S coordination sphere. In compound 1 the crystal packing is controlled mainly by interchain N-H?N and C-H?π interactions between the aminopyridine moieties, whereas in complexes 2 and 3 π-stacking interactions between the pyridyl planes stabilize the interchain or intermolecular packing, respectively. Thiocyanate and pyridylimine chelation to metal center is also scrutinized with EHMO analysis.