Xylans from the tropical grass Panicum maximum

Two xylans have been isolated from the mature tissues of the tropical grass Panicum maximum—an arabino(4-O-methylglucurono)xylan and an acidic galactoarabinoxylan. Both consist of a main chain of β(1 → 4) linked d-xylopyranosyl residues. The former has average of ca 46 such residues to which are attached ca 7 l-arabinofuranosyl and (ca 2 4-O-methyl-d-glucopyranuronosyl residues at C3 and C2 positions respectively. The acidic galactoarabinoxylan has a $\text{DP}$_n of ca 90 and contains arabinose, galactose, xylose and uronic acid residues in the molar ratio 10:5:22:4. Methylation analysis and periodate oxidation indicated the highly branched nature of this polysaccharide.     

Diterpenoid furans from Pterodon species

Investigation of diterpenoids in four species of Pterodon show varying oxidation patterns on the vinhaticane or vouacapane skeletons.     

Diterpenoid resin acids of Daemonorops draco

Chromatography of a cyclohexane extract of commercial “dragon's blood” resin yielded a fraction containing pimaric, isopimaric, dehydroabietic and abietic acids. A fifth component of the mixture was tentatively identified as sandaracopimaric acid.     

Comparative study of lignins isolated from Alfa grass (Stipa tenacissima L.)

Soda lignin, dioxane lignin and milled lignin were isolated from Alfa grass (Stipatenacissima L.). The physico-chemical characterization of three different lignins: one industrial lignin precipitated from soda spent liquor and two lignin preparations isolated under laboratory conditions from Alfa grass (also know as Esparto grass) was performed. The structures of lignins were studied by three non-destructive (FT-IR, solid state ¹³C NMR and UV/visible spectroscopy) and two destructive (nitrobenzene oxidation and thermogravimetric analysis) methods. Elemental analysis and the methoxyl content determination were performed in order to determine the C₉ formulae for the studied lignins. The total antioxidant capacity of the studied lignins has been determined and compared to commercial antioxidants commonly used in thermoplastic industry.     

AFLPs are incompatible with RAPD and morphological data in Pennisetum purpureum (Napier grass)

Accessions of Pennisetum purpureum in agricultural research centres in sub-Saharan Africa were genotyped using Amplified Fragment Length Polymorphisms (AFLPs) using primer combinations MluI/MseI. Cluster analyses of resulting bands suggested that the samples could be grouped into five large and five small-sized clusters. Principal coordinate analysis revealed two major clusters being well separated, with bulk of the samples forming one, poorly structured cluster. Our analyses failed to reveal the regional groupings found in previous studies using a subset of our sample universe and based on RAPDs as well as morphological and agronomical data. The inability of the AFLP data to clearly demarcate accessions is ascribed to either the presence of high levels of genetic uniformity, or non-optimal primers and/or bad germplasm management practices. The re-registration of all accessions, based on DNA barcoding, is suggested as a means to resolve the lingering problems regarding the identity of accessions.     

Copper tolerance of the biomass crops Elephant grass (Pennisetum purpureum Schumach), Vetiver grass (Vetiveria zizanioides) and the upland reed (Phragmites australis) in soil culture

Pot trials were conducted to study the influence of copper (Cu) on the growth and biomass of Elephant grass (EG, Pennisetum purpureum Schumach), Vetiver grass (VG, Vetiveria zizanioides) and the upland reed (UR, Phragmites australis). Cu toxicity in EG, VG and UR was positively correlated with the total and bioavailable Cu concentrations in the soil. Based on the EC₅₀, dry weights, Cu contents, chlorophyll contents and photosynthesis rates, the Cu tolerance of the three species followed the trend EG > VG > UR. There were no significant differences in the unit calorific values among the different plants, though the total calorific values of EG were higher than those of VG and UR due to its higher biomass. The addition of KH₂PO₄ to the soil decreased the bioavailability of Cu and the Cu uptake by plants. EG could therefore be a good candidate for growth on Cu-contaminated soils, especially those improved by phosphate.     

Rainfall seasonality determines annual/perennial grass balance in vegetation of Mediterranean Iberian

Much recent attention has been focused on the invasion and dominance of annual grass species in areas thought to have been historically dominated by perennial life forms. Explanations of this phenomenon in the literature have focused on two mechanisms favoring annuals: ruderal strategy associated with disturbance, and stress escaping associated with dry sites or deserts. Here I present evidence from vegetation surveys at 50 sites across a 1,200 km band of the Iberian Peninsula—a source region for many invasive annuals—showing that relative annual versus perennial grass composition is not well correlated with degree of disturbance or average annual precipitation. However, annual dominance is strongly and significantly linked to the seasonality of precipitation, in particular the relative intensity of summer drought. Disturbance was significantly associated with annual grass dominance in Iberia, but with much less explanatory power than summer drought intensity. Slope, aspect, and soil parent material were not significantly correlated with annual versus perennial grass dominance. These results suggest that subtle differences in rainfall seasonality largely drive grass composition in herbaceous Mediterranean vegetation. Furthermore, the patterns of annual grass invasion observed in the world’s other Mediterranean climate regions may be associated with similar climatic drivers.     

Antigenic cross-reactivity between Schistosoma mansoni and pollen allergens from the birch tree (Betula verrucosa) and Timothy grass (Phleum pratense): involvement of shared glycan epitopes and implications for the hygiene hypothesis

Previous studies have shown that schistosome infection can protect against allergic symptoms, but the underlying mechanisms are still not fully understood. Here we have shown that rabbit IgG antibodies raised against Schistosoma mansoni soluble egg antigens (SmSEA) are cross-reactive with a wide array of molecules in Timothy grass pollen (TGP) and birch tree pollen (BTP). Five of the cross-reactive pollen molecules (two from TGP and three from BTP) were selected randomly and identified by tandem mass spectrometric (TMS) analysis to be, respectively, the TGP allergens Phl p 1 and Phl p 5b, and BTP glutathione S-transferase (GST), and the BTP allergens Bet v 1 and Bet v 6.0102. Rabbit anti-SmSEA IgG antibodies that cross-reacted with each of the five allergens were found to be reactive with three major S. mansoni egg antigens, IPSE/alpha-1, omega-1 and kappa-5. Pairwise alignment of the amino acid sequences of each of the five TMS-identified pollen allergens with each of the three egg antigens revealed a low level of amino acid sequence identity. Further experiments indicated that the schistosome antigen/allergen cross-reactivity was mostly due to similar glycans present in helminths and plants, but not in mammals: so called cross-reactive carbohydrate determinants (CCDs). Previously, CCDs have been implicated in the cross-reactivity between many plants and invertebrates. Furthermore, pollen-induced anti-CCD IgGs have been found in sera of patients undergoing allergen-specific immunotherapy (SIT) and implicated in the treatment of the allergy. Thus, our finding provides not only possible explanations for the allergy-protective effect of helminth/schistosome infections as explained by the hygiene hypothesis, but also a potential starting point for improved SIT.     

Social behaviour of juvenile red sea urchins, Strongylocentrotus franciscanus (Agassiz)

This study examined social behaviour of juvenile red sea urchins, Strongylocentrotus franciscanus (Agassiz). At four coastal locations in British Columbia, Canada, distributions of juvenile sea urchins were examined in relation to adults. One-third of all juveniles were found underneath an adult “spine canopy”, another third outside the spine canopy but close to an adult, and the remainder were found apart from adults. Juveniles associated with adults were contagiously distributed with each other. In the laboratory, juveniles chose adults over other target locations. They selected adults in particular locations over others, and in one case showed selection among adults; but they did not select between fed and non-fed adults, nor between adults that had been “protective” and “non-protective” of juveniles in the field. In time-lapse film studies, starved juveniles showed little change in social behaviour when food was introduced, but showed a dramatic change in behaviour when predators were active. We suggest that juvenile red sea urchins are found under the spine canopies of adults as a result of juvenile behaviour; and that this interaction functions to protect juveniles from predation. The strong gregarious nature of juveniles among themselves may have evolved in a different selective situation as a defence against predation and to ensure reproductive success.     

Assessment of turtle grass (Thalassia testudinum ex Banks Konig) community structure in a UNESCO Biosphere Reserve

Tropical turtle grass beds (Thalassia testudinum) were investigated in an UNESCO Biosphere Reserve in St. Johns Island, United States Virgin Islands. Four coastal bays were studied to assess floral characteristics, benthic invertebrate density and secondary production. These bays varied with respect to oceanic exposure and anthropogenic stresses. Results indicate that Coral Bay Harbor, the most anthropogenetically impacted site, had the highest T. testudinum biomass, but the lowest floral diversity. Its faunal community was dominated by small polychaetes with significantly lower secondary production. The most protected site (Hurricane Hole) maintained the highest floral and faunal species richness, faunal density, faunal diversity, and secondary production. The other two bays, Great Lameshur and Little Lameshur, demonstrated intermediate plant biomass and species richness, faunal density and secondary production. Each of these bays, however, had high oceanic exposure due to their orientation which also demonstrated a sediment size shift to larger particles compared to the other sites. One unique finding was a significant increase in the shoot:root ratio in Little Lameshur where green turtle (Chelonia mydas) grazing was frequently observed, suggesting a potential top-down structuring force in this bay.     

In situ stalk growth rates in tropical western Atlantic sea lilies (Echinodermata: Crinoidea)

Despite their greater familiarity as fossils, stalked crinoids, or sea lilies, remain important components of hard-substrate assemblages at bathyal depths in both tropical western Atlantic and Pacific regions. To determine stalk growth rates, specimens collected along the western margin of Little Bahama Bank using the submersibles Johnson Sea Link I and II were measured, tagged with color-coded cable ties, returned to the sea floor either to the site at which they were collected or to different habitats or depths, and recovered several months to over a year later. This paper examines stalk growth rates in Neocrinus decorus, Cenocrinus asterius, and the subspecies of Endoxocrinus parrae (E. parrae parrae, E. parrae prionodes and E. parrae carolinae) and their variations relative to depth and current flow. Studies were carried out at three different depth sites: 249 m, 372-435 m and 540-576 m. N. decorus produces substantially more stalk per year than any subspecies of E. parrae or C. asterius (10-17 cm y^− 1 versus no more than 3.6 cm y^− 1) but contributes no more than twice as much skeletal volume to the sediment because of its more slender stalk. To examine environmental control of growth, E. parrae parrae was transplanted beyond its local depth range to the habitat at which deeper-dwelling E. parrae prionodes occurs (572 m). E. parrae parrae grew at 0.6 ± 0.4 cm y^− 1 (n = 6) here, significantly more slowly than in 404 m and more slowly than E. parrae prionodes (2.1 ± 0.6 cm y^− 1; n = 4), supporting the hypothesis that these two morphs exhibit distinct growth strategies. Growth rates for E. parrae parrae and N. decorus do not differ significantly between adjacent high and lower current-velocity habitats at the same depth, although both exhibit significantly shorter stalk lengths and crown elevations on raised topography apparently subject to stronger flow.     

Responses of the sea catfish Ariopsis felis to chemical defenses from the sea hare Aplysia californica

Ink secretion of sea hares (Aplysia spp.), which is a mixture of co-released ink from the ink gland and opaline from the opaline gland, protects sea hares from predatory invertebrates through diverse mechanisms. These include both aversive or deterrent compounds and also high concentrations of amino acids that stimulate the predators' chemical senses and divert the attack through phagomimicry or sensory disruption. The aim of the present study was to examine if sea hares also defend themselves from predatory vertebrates by interacting with their chemical senses. We used sea catfish, Ariopsis felis, in behavioral and electrophysiological experiments. Behavioral tests on sea catfish show that ink is aversive: when ink is added to palatable food items (noodles with food flavoring), the noodles are no longer eaten, and when ink is added to noodles without food flavoring, the noodles are avoided more than unflavored noodles. Behavioral tests also show that opaline and the amino acid components of either opaline or ink are appetitive. Electrophysiological recordings of chemosensory neuronal activity in the olfactory epithelium and maxillary barbels show that the olfactory and gustatory systems of sea catfish are highly stimulated by ink and opaline, and that the amino acid components of ink and opaline significantly contribute to these responses. Compounds generated by the activity of escapin, an L-amino acid oxidase in the secretion, are moderately stimulatory to both olfactory and gustatory systems. Taken together, our results support the idea that sea hares are chemically defended from predatory sea catfish largely through unpalatable chemical deterrents in ink, but possibly also through amino acids stimulating olfactory and gustatory systems and thus functioning through phagomimicry or sensory disruption.     

Multiple components in ink of the sea hare Aplysia californica are aversive to the sea anemone Anthopleura sola

Sea hares of the genus Aplysia rely on an array of behavioral and chemical defenses, including the release of ink and opaline, to protect themselves from predation. While many studies have demonstrated that ink and opaline are repellent to predators, very little is known about which components of these secretions are active against predators. Ink was previously shown to facilitate the escape of Aplysia from predatory anemones (Anthopleura) by eliciting tentacle retraction and/or shriveling, and gastrovascular eversion, but the metabolites mediating this interaction were not identified. We investigated the metabolites in Aplysia californica secretions that were aversive to the anemone Anthopleura sola, as demonstrated by tentacle shriveling and/or retraction. We found that ink elicited tentacle shriveling and/or retraction, while opaline elicited a feeding response. The active components in ink do not appear to be diet-dependent, as ink was aversive regardless of diet (natural seaweed diet vs. Gracilaria ferox). Furthermore, metabolites extracted from G. ferox were not aversive, suggesting that the aversive components are produced by the sea hares. We then examined escapin, a protein in ink with antimicrobial properties. Escapin quickly forms reaction products when mixed with the amino acids l-lysine and l-arginine, which would occur when ink and opaline are released into the sea hare mantle cavity. Neither escapin alone nor escapin mixed with its amino acid substrate l-lysine elicited aversive behaviors either immediately before or 2 min before applying to the tentacles. In addition, escapin mixed with opaline and applied to tentacles after 2 min did not elicit a significant aversive response. Using bioassay-guided fractionation, we attempted to isolate the components in A. californica ink that are aversive to A. sola. We determined that multiple components in ink, including both lipophilic and hydrophilic constituents, elicited aversive responses. We hypothesize that these components may facilitate A. californica's escape from A. sola by eliciting tentacle shriveling and/or retraction, which lead to anemones dropping ensnared sea hares.     

Sesquiterpene hydrocarbons of the liverwort Scapania ornithopodioides

The liverwort, Scapania ornithopodioides, was investigated for sesquiterpene hydrocarbons by utilizing GC and GCIMS and 17 components were identified. Among these, the major component, aromadendrene, and two minor ones, cyclosativene and α-farnesene are reported for the first time as constituents of liverworts. In addition, aromadendrene also occurred in three other Taiwanese liverworts examined.     

Correlation between grass carp (Ctenopharyngodon idella) resistance to grass carp reovirus and the genetic insert-deletion polymorphisms in promoter and intron of RIG-I gene

RIG-I (retinoic acid-inducible gene I) is an essential cytosolic pathogen recognition receptor that binds to a variety of viral RNA or DNA to induce type I interferons. In the present study, insert–deletion polymorphisms in promoter and introns of CiRIG-I (Ctenopharyngodon idella RIG-I) were explored, their associations with resistance/susceptibility to grass carp reovirus (GCRV) were analyzed. To this end, genomic sequence of CiRIG-I gene was obtained, and twenty pairs of primers were prepared for the detection of insert–deletion polymorphisms. Five insert–deletion mutations were found, a 2-bp mutation and an 8-bp mutation existed in the promoter and other three sizes in 74 bp, 146 bp and 53 bp were sited in the intron 8. After a challenge experiment, only the genotype and allele of − 740 insert–deletion mutation in the promoter and allele of 6804 insert–deletion mutation were significantly associated with resistance/susceptibility to GCRV among the five mutations (P < 0.05). To further identify this correlation, another independent challenge test was carried out. The result revealed that the cumulative mortality in ins/ins genotype individuals (43.75%) at − 740 insert–deletion mutation was significantly lower than that in ins/del (72.09%) and del/del (74.19%) genotypes (P < 0.05). Linkage disequilibrium and haplotype analysis showed 6610 insert–deletion mutation and 6804 insert–deletion mutation were linkage disequilibrium. The haplotype ins–ins (6610ins–6804ins) was significantly susceptible to GCRV, and ins–del (6610ins–6804del) was significantly resistant to GCRV (P < 0.05). Those could be potential gene markers for the future molecular selection of strains that are resistant to GCRV.     

Bioremediation of volatile oil hydrocarbons by epiphytic bacteria associated with American grass (Cynodon sp.) and broad bean (Vicia faba) leaves

Fresh leaves of American grass and broad beans grown in pristine soil were naturally colonized with cultivable volatile oil hydrocarbon-utilizing bacteria, whose numbers increased significantly in plants grown in oily soil. According to their 16S rRNA gene sequences those bacteria were affiliated to various species of the genera Rhodococcus and Pseudomonas. Qualitative growth studies revealed that pure cultures of these phyllospheric bacteria could grow successfully on a solid mineral medium containing individual alkanes with chain lengths of C₉ through C₄₀ and the aromatics phenanthrene, naphthalene, and biphenyl as sole sources of carbon and energy. Quantitative measurements showed that the individual pure bacterial isolates degraded between about 20 and 30% of crude oil, n-hexadecane, or phenanthrene in batch culture after a one-week incubation. These results reflect the high hydrocarbon degradation potential of those bacteria. The isolates were diazotrophic (nitrogen fixers), meaning that they were self-dependent in covering their nitrogen requirements. Incubating fresh leaves in closed microcosms containing volatile oil hydrocarbons resulted in up to more than 80% attenuation of these compounds after two weeks. Experimental evidence was provided that the leaf tissues did not contribute to this attenuation, which was exclusively due to the bacterial activity.