Self/non-self discrimination and the problem of keeping T cells alive

Burnet appreciated the requirement for self/non-self discrimination and presciently postulated elimination of auto-aggressive cells during early life. He could not have known that, for T cells, a limited degree of autoreactivity is beneficial for the immune system. Here, we review evidence that recognition of self-components keeps T cells alive and regulates self-tolerance.     

T cell recognition of bovine ribonuclease. Self/non-self discrimination at the level of binding to the I-Ak molecule

Bovine RNase A specific T-cell hybridomas were generated to study the recognition of foreign Ag by T lymphocytes. One hybrid, TS12, was shown to recognize RNase in association with I-Ak. This hybridoma required bovine RNase to be processed before recognition. The immunogenic determinant on the RNase molecule recognized by TS12 was localized to the tryptic fragment RNase(40-61). All of the stimulatory ability of this determinant was shown to be contained within the synthetic 14mer RNase(43-56). When this segment of bovine RNase was compared with the self murine sequence, only one amino acid difference was found, a substitution of a proline residue at position 50 for a serine residue. This substitution completely abolishes binding to the I-Ak molecule, as shown by both functional and direct binding assays. This finding shows that self/non-self discrimination not only occurs at the level of the T cell, but also can be caused by an inability of the self peptide to associate with a class II molecule.     

Implications of self/non-self discrimination for spatial patterning of clonal plants

Many clonal plants are characterised by tussock growth forms, but the mechanisms that account for their formation and maintenance are still vague. Here we examine the possible effects of the recently identified phenomenon of self/non-self discrimination on the spatial distribution and patterning of ramets, tussocks and clones in stands of clonal plants. Spatially explicit ramet-based simulation modeling of growth and competition have shown that compact tussocks can be generated as a transient phenomenon that typically disappears at equilibrium. We introduced self/non-self discrimination into a spatial model by decreasing competition between neighbouring ramets on the same clonal fragment. The results demonstrate that self/non-self discrimination can have significant effects on clonal growth and architecture with a clear tendency to generate long-lasting and self-sustaining clumps. Interestingly, this effect was qualitatively independent of other architectural and growth attributes of the plants, making it a candidate mechanism of stable clumped growth forms observed in many clonal plants and communities. Furthermore, the introduction of self/non-self discrimination shifted competition from the level of ramets to that of clonal fragments, which in turns strongly increased genet extinction rates. Our results stress the need for greater attention to the rather neglected scaling up of physiological and morphogenetical controls to the population and community levels.     

Self/non-self Discrimination in Basal Metazoa: Genetics of Allorecognition in the Hydroid Hydractinia

Colonial basal metazoans often encounter members of their ownspecies as they grow on hard substrata, with the encounterstypically resulting in either fusion of close relatives or rejectionbetween unrelated colonies. These allorecognition responsesplay a critical role in maintaining the genetic and physiologicalintegrity of the colony. Allorecognition responses in basalmetazoans are controlled by highly variable genetic systems.The molecular nature of such systems, however, remains to bedetermined. Current efforts to identify the genes and moleculescontrolling allorecognition in basal metazoans have followedtwo pathways: identification of molecules differentially expressedin incompatible interactions, and positional or map-based cloningof allorecognition genes. Most studies following the first approachhave been performed with marine demosponges, while those followingthe second approach have centered on the cnidarian of the genusHydractinia. Here, I discuss the latter, focusing primarilyon the genetic control of allorecognition responses.     

Self from nonself discrimination in single-celled eukaryotes

A mechanism for self recognition has been proposed to control the mating type interactions in the marine ciliate Euplotes raikovi. The relevant molecules involved in this mechanism are the mating pheromones inherited via high-multiple alleles codominant at the Mendelian locus mat. Four of these mating pheromones have been isolated, purified, and characterized. They are relatively small and acidic proteins (Mr, 11,000-12,000; pI, 3.7-4.0), which are still active at the concentration of approximately 10(-12) molar. Data, yet preliminary, of amino acid sequencing of the purified mating pheromones showed extensive structural homologies and the common presence of the aspartic acid at the amino terminal.     

Self and non-self recognition between gametes of the ascidian,Halocynthia roretzi

Summary The self-sterility ofHalocynthia roretzi from Mutsu Bay, Japan, was examined. This sterility is strict and not a single egg can be fertilized in self-sterile animals. Less than 2% of the animals were self-fertile (with 100% cross-fertility). All heterologous sperm can fertilize all eggs, although there are pairs of individuals in which the coelomocytes recognize each other as self. Eggs deprived of follicle cells cannot be fertilized by either autologous or heterologous spermatozoa. Detached autologous or heterologous follicle cells can reattach to the chorion in calcium-enriched sea water and the reconstituted eggs recover their ability to be fertilized. A mosaic egg can therefore be obtained, which consists of oocyte, test cells and chorion originating from one individual and follicle cells from another. The mosaic egg was used to determine the site of recognition of self and non-self. The results indicate that the recognition resides in the chorion and/or test cells, probably the chorion. The relationship between somatic alloreactivity, previously found in coelomocytes ofH. roretzi, and gamete reactivity is discussed.     

Self/nonself perception and recognition mechanisms in plants: a comparison of self-incompatibility and innate immunity

Analyses of emerging concepts indicate that parallels exist between self-incompatibility and pathogen recognition. In the case of surveillance of 'nonself', plant immune responses are triggered either by pattern recognition receptors (PRRs) that detect conserved pathogen-associated molecular patterns (PAMPs) or by resistance (R) proteins recognizing isolate-specific pathogen effectors. PAMP detection is an important component of innate immunity in plants and serves as an early warning system for the presence of potential pathogens and activation of plant defense mechanisms. In the Brassicaceae, the recognition of 'self' and self-incompatibility are components of a receptor-ligand based mechanism that utilizes an S receptor kinase (SRK) to perceive and reject 'self'-pollen. SRK is an S-domain receptor-like kinase (RLK), which in turn is part of the RLK family, some members of which represent PRRs involved in the detection of PAMPs. S-domain RLKs also occur in species that do not exhibit self-incompatibility and are up-regulated in response to wounding, PAMPs and pathogen recognition. Although evolution may have driven expansion of certain RLK families to serve roles in particular physiological processes, this may not exclude these receptor types from functioning in different programs. Recent findings on self/nonself recognition are reviewed and conceptual and mechanistic links between microbial recognition and self-incompatibility are discussed.     

The pollination of Trimenia moorei (Trimeniaceae): floral volatiles,insect/wind pollen vectors and stigmatic self-incompatibility in a basal angiosperm

Trimenia moorei (Oliv.) Philipson is an andromonoecious liane with >0.40 of the total flower buds maturing as bisexual flowers. Male and bisexual flowers are strongly scented with pollen, anther sacs and receptacle scars testing positively for volatile emissions. Scent analyses detect over 20 components. The major fatty acid derivative is 8-heptadecene, and 2-phenylethanol dominates the benzenoids. While hover-flies in the genera Melangyna and Triglyphus contact the stigma with their probosces, the stigma secretes no free-flowing, edible fluids. Copious pollen is the only edible reward consumed by hover-flies (Syprhidae), sawflies (Pergidae) and bees in the families Apidae, Colletidae and Halictidae. All these insects carried pollen of T. moorei on their heads, legs and thoraces and female bees in the genera Apis, Exoneura, Leioproctus and Lasioglossum stored pollen on their hind legs. Pollen traps also indicate that pollen is shed directly into the air, permitting wind pollination. When bisexual flower buds are bagged (isolated from insect foragers) on the liane then subjected to a series of hand-pollination experiments after perianth segments open, the structural analyses of pollen-carpel interactions indicate that T. moorei has a trichome-rich dry-type stigma with an early-acting self-incompatibility (SI) system. Bicellular pollen grains deposited on stigmas belonging to the same plant germinate but fail to penetrate intercellular spaces, while grains deposited following cross-pollination reach the ovule within 24 h. Fluorescence analyses of 76 carpels collected at random from unbagged (open-pollinated) flowers on five plants indicates that at least 64% of carpels are cross-pollinated in situ. Trimenia moorei is the first species within the ANITA group, and second within reilictual-basal angiosperm lineages, to exhibit stigmatic SI in combination with dry-type stigma and bicellular pollen, a condition once considered to be atypical for angiosperms as a whole but now known to be present in numerous taxa.     

Evidence for ovarian self-incompatibility as a cause of self-sterility in the relictual woody angiosperm,Pseudowintera axillaris (Winteraceae)

Species within the genus Pseudowintera exhibit high rates of self-sterility. Self-sterility in the genus has been previously posited-but not confirmed-to be the result of late-acting ovarian self-incompatibility (OSI) functioning within nucellar tissue of the ovule to prevent self pollen tubes from entering the embryo sac. Structural and functional aspects of pollen-carpel interactions and early seed development following cross- and self-pollination were investigated in P. axillaris to determine the site, timing and possible mechanisms of self-sterility. No significant differences were observed between pollen tube growth, ovule penetration and double fertilization following cross- and self-pollination. Pollen tubes exhibited phasic growth in an extracellular matrix composed of proteins and carbohydrates, as well as arabinogalactans/arabinogalactan proteins. A uniform failure in embryo sac development prior to division of the zygote was apparent within 15 d following double fertilization by self gametes. Results indicate that SI mechanisms in P. axillaris do not prevent double fertilization from occurring. Instead, mechanisms of self-sterility affect post-zygotic development of the embryo sac. Although self-sterility may be attributed to inbreeding depression, given the post-zygotic nature of failure in embryo sac development, the possibility of late-acting OSI is discussed.     

MISS-Prot: web server for self/non-self discrimination of protein residue networks in parasites; theory and experiments in Fasciola peptides and Anisakis allergens

Infections caused by human parasites (HPs) affect the poorest 500 million people worldwide but chemotherapy has become expensive, toxic, and/or less effective due to drug resistance. On the other hand, many 3D structures in Protein Data Bank (PDB) remain without function annotation. We need theoretical models to quickly predict biologically relevant Parasite Self Proteins (PSP), which are expressed differentially in a given parasite and are dissimilar to proteins expressed in other parasites and have a high probability to become new vaccines (unique sequence) or drug targets (unique 3D structure). We present herein a model for PSPs in eight different HPs (Ascaris, Entamoeba, Fasciola, Giardia, Leishmania, Plasmodium, Trypanosoma, and Toxoplasma) with 90% accuracy for 15?341 training and validation cases. The model combines protein residue networks, Markov Chain Models (MCM) and Artificial Neural Networks (ANN). The input parameters are the spectral moments of the Markov transition matrix for electrostatic interactions associated with the protein residue complex network calculated with the MARCH-INSIDE software. We implemented this model in a new web-server called MISS-Prot (MARCH-INSIDE Scores for Self-Proteins). MISS-Prot was programmed using PHP/HTML/Python and MARCH-INSIDE routines and is freely available at: . This server is easy to use by non-experts in Bioinformatics who can carry out automatic online upload and prediction with 3D structures deposited at PDB (mode 1). We can also study outcomes of Peptide Mass Fingerprinting (PMFs) and MS/MS for query proteins with unknown 3D structures (mode 2). We illustrated the use of MISS-Prot in experimental and/or theoretical studies of peptides from Fasciola hepatica cathepsin proteases or present on 10 Anisakis simplex allergens (Ani s 1 to Ani s 10). In doing so, we combined electrophoresis (1DE), MALDI-TOF Mass Spectroscopy, and MASCOT to seek sequences, Molecular Mechanics + Molecular Dynamics (MM/MD) to generate 3D structures and MISS-Prot to predict PSP scores. MISS-Prot also allows the prediction of PSP proteins in 16 additional species including parasite hosts, fungi pathogens, disease transmission vectors, and biotechnologically relevant organisms.     

Evaluating self-incompatibility in Chrysanthemum

Summary The impact of ovule number on seed set calculations for self-incompatible (SI) species was investigated. Diploid Chrysanthemum was chosen for this study because accurate counts of the potential number of ovules could be made. Individuals in populations of C. carinatum, C. coronarium, C. c. subsp. spatiosum, and C. segetum were crossed in complete diallels. All species exhibited similar results. Therefore, only the diallel data from C. coronarium subsp. spatiosum were presented. The seed set data with and without ovule counts were processed by SIGMAS, a computer program designed to analyze SI data. Incorporation of the actual number of ovules into seed set diallels provided the most realistic representation of values for self-incompatibility studies. Data derived from equations excluding ovule counts might lead to inaccurate genetic interpretations. Ovule counts were significant between and within genotypes for self (disc and ray florets), but not cross (ray florets only) pollinations. The disc florets in self-pollinations were found to be responsible for increasing the variability in ovule number. The statistics indicate that the disc and ray florets composed two distinct populations. At the diploid level with a single daisy flower type, the disc floret numbers were variable, whereas ray florets were relatively static. This was not the case with polyploid chrysanthemums, where both ovule populations were dynamic and interactive. The conservative nature of percent pseudo-self-compatibility (%PSC) deems it necessary to obtain an accurate measure of female fertility. Values for this could be obtained using a bulk pollination or a tester with unmatched S alleles.Scientific Journal Series paper no. 15,880 of the Minnesota Agricultural Experiment Station.     

Late-acting self-incompatibility in angiosperms

In most self-incompatible (SI) plants, pollen tube growth in self-pollinated flowers is inhibited on the stigma or in the style. SI systems that operate in the ovary have been assumed to be extremely rare. Evidence from many plant species is presented to show that the SI barriers in the ovary, described here as late-acting SI systems, are quite common. The late-acting SI systems are divided into four categories: (1) ovarian inhibition of incompatible pollen tubes before the ovule is reached; (2) prefertilization inhibition in the ovule; (3) post-zygotic rejection of the embryo, and (4) ovular inhibition for which the cytological details have not been established. Whether or not post-zygotic incompatibility systems can be distinguished from inbreeding depression depends upon the assumptions underlying the genetic models of self-incompatibility. However, four approaches are outlined that could distinguish between active uniform rejections that are presumably evolved responses to inbreeding depression and the passive, variable failures that are commonly understood to be expressions of typical inbreeding depression. Possible advantages of late-acting SI include an extended period of time over which pollen genotypes may be evaluated by the maternal parent and greater flexibility in the choice of male parents. Due to a paucity of data regarding the genetics and physiology of lateacting SI systems, little can be said at this time about the possible diversity of such systems of their evolutionary relationships with classical gametophytic and sporophytic SI. An hypothesis for the operation of post-zygotic SI is described whereby maternal resources to developing embryos are terminated if the embryo (and/or endosperm) fall below a threshold level of heterosis. This hypothesis is a modification of one first proposed by Westoby and Rice in 1982 to explain variable maternal resource allocation to developing embryos.     

Molecular phylogenies in angiosperm evolution

We have cloned and sequenced cDNAs for the glyceraldehyde-3-phosphate dehydrogenase of glycolysis, gapC, from a bryophyte, a gymnosperm, and three angiosperms. Phylogenetic analyses are presented for these data in the context of other gapC sequences and in parallel with published nucleotide sequences for the chloroplast encoded gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase (rbcL). Relative-rate tests were performed for these genes in order to assess variation in substitution rate for coding regions, along individual plant lineages studied. The results of both gene analyses suggest that the deepest dichotomy within the angiosperms separates not magnoliids from remaining angiosperms, but monocotyledons from dicotyledons, in sharp contrast to prediction from the Euanthial theory for angiosperm evolution. Furthermore, these chloroplast and nuclear sequence data taken together suggest that the separation of monocotyledonous and dicotyledonous lineages took place in late Carboniferous times [approximately 300 Myr before the present (Mybp)]. This date would exceed but be compatible with the late-Triassic (approximately 220 Mybp) occurrence of fossil reproductive structures of the primitive angiosperm Sanmiguelia lewisii.      

S-RNase-based self-incompatibility in Petunia inflata

Background

For the Solanaceae-type self-incompatibility, also possessed by Rosaceae and Plantaginaceae, the specificity of self/non-self interactions between pollen and pistil is controlled by two polymorphic genes at the S-locus: the S-locus F-box gene (SLF or SFB) controls pollen specificity and the S-RNase gene controls pistil specificity.

Scope

This review focuses on the work from the authors'' laboratory using Petunia inflata (Solanaceae) as a model. Here, recent results on the identification and functional studies of S-RNase and SLF are summarized and a protein-degradation model is proposed to explain the biochemical mechanism for specific rejection of self-pollen tubes by the pistil.

Conclusions

The protein-degradation model invokes specific degradation of non-self S-RNases in the pollen tube mediated by an SLF, and can explain compatible versus incompatible pollination and the phenomenon of competitive interaction, where SI breaks down in pollen carrying two different S-alleles. In Solanaceae, Plantaginaceae and subfamily Maloideae of Rosaceae, there also exist multiple S-locus-linked SLF/SFB-like genes that potentially function as the pollen S-gene. To date, only three such genes, all in P. inflata, have been examined, and they do not function as the pollen S-gene in the S-genotype backgrounds tested. Interestingly, subfamily Prunoideae of Rosaceae appears to possess only a single SLF/SFB gene, and competitive interaction, observed in Solanaceae, Plantaginaceae and subfamily Maloideae, has not been observed. Thus, although the cytotoxic function of S-RNase is an integral part of SI in Solanaceae, Plantaginaceae and Rosaceae, the function of SLF/SFB may have diverged. This highlights the complexity of the S-RNase-based SI mechanism. The review concludes by discussing some key experiments that will further advance our understanding of this self/non-self discrimination mechanism.     

Multi-allelic self-incompatibility polymorphisms in plants

The multi-allelic self-incompatibility polymorphisms in angiosperms have long interested geneticists and population geneticists, but the limits of classical genetic resolution were reached many years ago. In recent years, new progress has been made by molecular genetic approaches. Intriguing similarities to and differences from the fungal systems are emerging. The polymorphism at these loci is now known to be even more baroque than appeared from classical genetic studies. Alleles differ so much at the level of both the DNA and protein sequence that they would be difficult to recognise as products of the same locus, were it not for the presence of certain conserved regions. Despite the successes of the recent work, the locus responsible for the specificity of the incompatibility reaction in pollen, and the mechanism of self-incompatibility, remain elusive.     

Fluctuations in heteromorphic self-incompatibility systems

Summary The genetic determination of heterostyly is briefly reviewed and experimental data are presented on the inheritance of tristyly in Oxalis compressa. It is shown that the model appropriate to Lythrum salicaria, of two diallelic loci, is inadequate to explain segregation patterns found in O. compressa, especially the reversal of dominance of the short phenotype. An extended model having an additional allele at the short locus, and a separate modifier gene, is presented and its deterministic genotype frequency dynamics examined numerically. It is shown that fixation of these extra genes or alleles is unlikely. Problems of testing the extended model are considered.