与PRRSV nsp11互作的宿主细胞蛋白鉴定及生物信息学分析

【目的】研究猪繁殖与呼吸综合征病毒(Porcine reproductive and respiratory syndrome virus,PRRSV)nsp11与宿主细胞蛋白之间的相互作用,对于揭示nsp11在病毒复制过程中发挥的功能至关重要。【方法】在病毒感染细胞的基础上,利用nsp11的单克隆抗体,采用免疫沉淀结合串联质谱的方法,筛选与PRRSV nsp11相互作用的宿主细胞蛋白,并对所筛选出的宿主细胞蛋白进行了GO注释、COG注释和KEGG代谢通路注释;选取筛选出的宿主细胞蛋白IRAK1,利用免疫共沉淀技术和激光共聚焦技术鉴定其与nsp11之间的相互作用。【结果】与空白对照组相比,病毒感染组中出现3条差异带;经质谱分析共筛选得到了201个与nsp11相互作用的宿主细胞蛋白,分别与蛋白质代谢、细胞信号通路转导以及病原致病性等密切相关;在生物信息学分析的基础上,实验验证了nsp11确与宿主细胞蛋白IRAK1进行相互作用。【结论】鉴定出与PRRSV nsp11相互作用的宿主细胞蛋白,生物信息学分析显示它们在病毒的复制和致病过程中发挥重要作用。研究结果为探究nsp11的生物学功能指明了方向,也为研究宿主细胞蛋白与病毒蛋白间的相互作用及其调控病毒复制和致病性的分子机制奠定了基础。     

PIASx结构与功能的研究进展

PIAS（protein inhibitor of activated STAT）蛋白家族能够与许多蛋白质发生相互作用,其中大部分为转录因子。PIASx是4个组成成员中的一种,其包括两个亚型。PIASx通过与不同种类的蛋白相互作用,影响它们的活性和功能。PIASx蛋白的调控机制主要有两种：一种是通过其自身所具有的SUMO（smallubiquitin-related modifiers）E3连接酶活性,促进对一些转录因子、转录辅因子的SUMO化修饰,从而调控它们的转录活性;另一种是作为构架蛋白,通过与雄激素受体的作用参与雄激素介导的基因转录调节。PIAS蛋白的上述两种作用机制并不是完全互相排斥的,这体现了PIASx蛋白功能的特异性和复杂性。     

蛋白质SUMO化修饰及其调控

SUMO化修饰是一种由SUMO特异性的活化酶(E1)、结合酶(E2)和连接酶(E3)共同催化完成的类泛素化修饰。同时,它又是一个动态且可逆的过程,介导去SUMO化的则是SUMO特异性蛋白酶(SENP)家族。SUMO化修饰的靶蛋白存在于细胞的各个部位,通过loss of function和gain of function机制,SUMO化修饰可调控蛋白质的活性与功能。SENPs介导的去SUMO化是决定靶蛋白SUMO化修饰水平的主要因素之一,同时SENPs也是调节蛋白SUMO化修饰的一个主要环节,因此SENPs在调控靶蛋白所参与的信号通路中发挥着重要作用。     

miR-34b调控肠道病毒71型在人横纹肌肉瘤细胞中的复制及机制

【背景】研究发现microRNAs(miRNAs)可以参与调控病毒在宿主细胞内感染和复制的过程。【目的】研究miR-34b对肠道病毒71型(Enterovirus71,EV71)在宿主细胞内的复制及其可能机制。【方法】在人横纹肌肉瘤(Rhabdomyosarcoma,RD)细胞中转染miR-34b mimics和Inhibitor,通过Western blot和Real-time PCR实验检验EV71病毒的复制和表达情况。随后利用双荧光素酶报告系统验证miR-34b与潜在靶点eIF4E的相互作用,并检测miR-34b对RD细胞中eIF4E mRNA表达水平的影响。【结果】miR-34b可以促进病毒在RD细胞中的复制和表达,而miR-34b抑制剂有抑制病毒复制的作用,细胞内miR-34b可以通过作用于靶基因eIF4E调控EV71在宿主细胞中的复制过程。【结论】揭示了miR-34b在EV71病毒复制过程中的调控作用及机制,研究EV71病毒与宿主miRNAs的相互作用机制为进一步阐明EV71病毒感染与复制机理奠定了基础。     

类泛素化修饰蛋白SUMO1的表达纯化及抗体制备

SUMO是近年发现的类泛素化修饰蛋白,可通过异肽键共价连接到靶蛋白上,影响靶蛋白的细胞内定位、稳定性及与其它生物大分子的相互作用. 为研究蛋白质的SUMO化修饰,本文表达并利用亲和层析的方法纯化了重组的人SUMO1,制备了兔抗hSUMO1的多克隆抗体. 经ELISA和免疫印迹检测,获得了灵敏度高、特异性好的抗体,可用于SUMO化修饰靶蛋白的鉴定及SUMO化修饰的生物学功能研究.     

SUMO在转录中的抑制作用

许多调控基因转录的重要蛋白质能被SUMO (small ubiquitin-related modifier)化修饰,这些蛋白质包括转录因子,转录辅助因子和染色质修饰酶.SUMO化修饰对底物蛋白的活性产生影响,在大多数情况下,与转录活性的抑制有关.最近,对SUMO化调控转录的机制有了新的认识,认为SUMO化的一个重要作用是促进转录因子与转录抑制因子之间的相互作用.另一方面,已经发现转录共抑制因子HDAC (组蛋白去乙酰化酶)可以作为SUMO化的底物、效应因子和调控因子,说明乙酰化和SUMO化之间复杂的相互作用对基因转录调控起着非常重要的作用.     

SUMO化修饰系统及其在肿瘤发展中的作用

小泛素相关修饰物(small ubiquitin-related modifier,SUMO)修饰是一种动态可逆的蛋白质翻译后修饰方式,SUMO蛋白可以共价结合到靶蛋白上。目前,在哺乳动物中,已经鉴定出4种不同的SUMO蛋白亚型,分别是SUMO-1、SUMO-2、SUMO-3和SUMO-4。SUMO化修饰对靶蛋白的功能具有重要的调节作用,如蛋白质的稳定性、亚细胞定位、信号转导、基因转录调控等。最新的研究表明,SUMO化修饰与肿瘤的发生、发展密切相关,但具体的机制还不清楚。该文就SUMO化修饰在肿瘤发展过程中作用机制的最新研究进展作一综述。     

PIAS1 enhances SUMO-1 modification and the transactivation activity of the major immediate-early IE2 protein of human cytomegalovirus

The protein inhibitor of activated STAT1 (PIAS1), known to be a small ubiquitin-like modifier (SUMO) E3 ligase, was found to interact with the human cytomegalovirus IE2 protein. We found that the sumoylation of IE2 was markedly enhanced by wild-type PIAS1 but not by a mutant containing a Cys to Ser substitution at position 351 (C351S) within the RING finger-like domain. In target reporter gene assays, wild-type PIAS1, but not the C351S mutant, enhanced the IE2-mediated transactivations of viral polymerase promoter and cellular cyclin E promoter and this augmentation required the intact sumoylation sites of IE2. Our results suggest that PIAS1 acts as a SUMO E3 ligase toward IE2 and that it may regulate the transactivation function of IE2. To our knowledge, IE2 is the first viral target found to be regulated by a SUMO E3 ligase.     

MiR-506 inhibits PRRSV replication in MARC-145 cells via CD151

Porcine reproductive and respiratory syndrome (PRRS) is one of the most economically important diseases of swine, which is caused by PRRS virus (PRRSV). CD151, one of PRRSV entry mediators, determines the cell susceptibility for PRRSV. Emerging evidence indicates that the host microRNAs (miRNAs) play key roles in modulating virus infection and viral pathogenesis. In the present study, targeting porcine CD151 miRNAs were identified, and their function during PRRSV infection in MARC-145 cells was further verified. We found that miR-506 could directly target porcine CD151 3′-UTR mRNA by luciferase reporter assay. Overexpression of miR-506 significantly decreased CD151 expression at both mRNA and protein levels. Furthermore, overexpression of miR-506 reduced cellular PRRSV replication and virus release in MARC-145 cells. Our results suggested that miR-506 could inhibit PRRSV replication by directly targeting PRRSV receptor of CD151 in MARC-145 cells. However, the molecular mechanisms of miR-506 and its function in vivo need further investigation.     

Interaction between geminivirus replication protein and the SUMO-conjugating enzyme is required for viral infection

Geminiviruses are small DNA viruses that replicate in nuclei of infected plant cells by using plant DNA polymerases. These viruses encode a protein designated AL1, Rep, or AC1 that is essential for viral replication. AL1 is an oligomeric protein that binds to double-stranded DNA, catalyzes the cleavage and ligation of single-stranded DNA, and induces the accumulation of host replication machinery. It also interacts with several host proteins, including the cell cycle regulator retinoblastoma-related protein (RBR), the DNA replication protein PCNA (proliferating cellular nuclear antigen), and the sumoylation enzyme that conjugates SUMO to target proteins (SUMO-conjugating enzyme [SCE1]). The SCE1-binding motif was mapped by deletion to a region encompassing AL1 amino acids 85 to 114. Alanine mutagenesis of lysine residues in the binding region either reduced or eliminated the interaction with SCE1, but no defects were observed for other AL1 functions, such as oligomerization, DNA binding, DNA cleavage, and interaction with AL3 or RBR. The lysine mutations reduced or abolished virus infectivity in plants and viral DNA accumulation in transient-replication assays, suggesting that the AL1-SCE1 interaction is required for viral DNA replication. Ectopic AL1 expression did not result in broad changes in the sumoylation pattern of plant cells, but specific changes were detected, indicating that AL1 modifies the sumoylation state of selected host proteins. These results established the importance of AL1-SCE1 interactions during geminivirus infection of plants and suggested that AL1 alters the sumoylation of selected host factors to create an environment suitable for viral infection.     

The Human Cytomegalovirus DNA Polymerase Processivity Factor UL44 Is Modified by SUMO in a DNA-Dependent Manner

During the replication of human cytomegalovirus (HCMV) genome, the viral DNA polymerase subunit UL44 plays a key role, as by binding both DNA and the polymerase catalytic subunit it confers processivity to the holoenzyme. However, several lines of evidence suggest that UL44 might have additional roles during virus life cycle. To shed light on this, we searched for cellular partners of UL44 by yeast two-hybrid screenings. Intriguingly, we discovered the interaction of UL44 with Ubc9, an enzyme involved in the covalent conjugation of SUMO (Small Ubiquitin-related MOdifier) to cellular and viral proteins. We found that UL44 can be extensively sumoylated not only in a cell-free system and in transfected cells, but also in HCMV-infected cells, in which about 50% of the protein resulted to be modified at late times post-infection, when viral genome replication is accomplished. Mass spectrometry studies revealed that UL44 possesses multiple SUMO target sites, located throughout the protein. Remarkably, we observed that binding of UL44 to DNA greatly stimulates its sumoylation both in vitro and in vivo. In addition, we showed that overexpression of SUMO alters the intranuclear distribution of UL44 in HCMV-infected cells, and enhances both virus production and DNA replication, arguing for an important role for sumoylation in HCMV life cycle and UL44 function(s). These data report for the first time the sumoylation of a viral processivity factor and show that there is a functional interplay between the HCMV UL44 protein and the cellular sumoylation system.     

Exostosin glycosyltransferase 1 reduces porcine reproductive and respiratory syndrome virus infection through proteasomal degradation of nsp3 and nsp5

Porcine reproductive and respiratory syndrome virus (PRRSV) continues to be a serious threat to the swine industry worldwide. Exostosin glycosyltransferase 1 (EXT1), an enzyme involved in the biosynthesis of heparin sulfate, has also been reported to be a host factor essential for a wide variety of pathogens. However, the role of EXT1 in PRRSV infection remains uncharted. Here, we identified that PRRSV infection caused an increase of EXT1 expression. EXT1 knockdown promoted virus infection, whereas its overexpression inhibited virus infection, suggesting an inhibitory function of EXT1 to PRRSV infection. We found that EXT1 had no effects on the attachment, internalization, or release of PRRSV but did restrict viral RNA replication. EXT1 was determined to interact with viral nonstructural protein 3 (nsp3) and nsp5 via its N-terminal cytoplasmic tail and to enhance K48-linked polyubiquitination of these two nsps to promote their degradation. Furthermore, the C-terminal glycosyltransferase activity domain of EXT1 was necessary for nsp3 and nsp5 degradation. We also found that EXT2, a EXT1 homolog, interacted with EXT1 and inhibited PRRSV infection. Similarly, EXT1 effectively restricted porcine epidemic diarrhea virus and porcine enteric alphacoronavirus infection in Vero cells. Taken together, this study reveals that EXT1 may serve as a broad-spectrum host restriction factor and suggests a molecular basis for the potential development of therapeutics against PRRSV infection.