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1.
In this study, conformational behavior, structural, and vibrational characterization of the carboxy terminal dipeptide of β-endorphin (glycy-l-glutamine, glycyl-glutamine, beta-endorphin30-31), which is an inhibitory neuropeptide synthesized from beta-endorphin1-31 in brain stem regions, has been investigated. The theoretically possible stable conformers were searched by means of molecular mechanics method to determine their energetically preferred conformations. The 360 different conformations were calculated with the φ, Ψ, χ dihedral angles using the Ramachandran maps. The most stable conformation of the title molecule is characterized by the extended backbone shape (e) in the BR conformational range with ?.78 kcal/mol energy. The cis- and trans-dimeric forms of the dipeptide were also formed and energetically preferred conformations of dimers were investigated. The experimental methods (FT-IR, micro-Raman spectroscopies) coupled with quantum chemical calculations based on density functional theory (DFT) have been used to identify the geometrical, energetic, and vibrational characteristics of the dipeptide. The assignment of the vibrational spectra was performed based on the potential energy distribution of the vibrational modes. To investigate the electronic properties, such as nonlinear optical properties, the electric dipole moment, the mean polarizability, the mean first hyperpolarizability, and HOMO–LUMO energy gaps were computed using the DFT with the B3LYP/6-31++G(d,p) basis set combination. The second-order interaction energies were derived from natural bonding orbital analysis. The focus of this study is to determine possible stable conformation on inhibitory neuropeptide and to investigate molecular geometry, molecular vibrations of monomeric and dimeric forms, and hydrogen bonding interactions of glycy-l-glutamine dipeptide.  相似文献   

2.
The conformational properties of the protected seven-residue C-terminal fragment the lipopeptaibol antibiotic Trichogin A IV (Boc-Gly-Gly-Leu-Aib-Gly-Ile-Leu-OMe) has been examined in CDCl3 and (CD3)2SO by 1H-nmr. Evidence for a multiple β-turn conformation [type I′ at Gly(1)-Gly(2), type II at Leu(3)-Aib(4), and a type I′ at Aib(4)-Gly(5)] suggests that Leu(3) has preferred an extended or semiextended conformation over a helical conformation in CDCl3. This structure is thus in contrast to earlier observations of seven-residue peptides containing a single central Aib preferring helical conformations in both solution and crystalline slates. A structural transition to a frayed right-handed helix is absented in (CD3)2SO. These results suggest that nonhelical conformations may be important in Gly-rich peptides containing Aib. Further, the presence of amino acids with contradictory influences on backbone conformational freedom can lead to well-defined conformational transitions even in small peptides. © 1995 John Wiley & Sons, Inc.  相似文献   

3.
Kotev MI  Ivanov PM 《Chirality》2008,20(3-4):400-410
The conformations of the 16-membered macrolide antibiotic leucomycin-V (1) were studied with molecular mechanics. Leucomycin-V contains a conjugated pi-electron fragment and necessitates special treatment with the MM3(pi) modeling protocol. Comparison was made with results from the standard MM3 scheme. The CONFLEX conformational search procedure was used for finding low-energy conformations. The computed data are indicative for the existence of mainly one conformation of the macro-ring of 1 and minor participation of several others. Intramolecular hydrogen bonds play important roles for the preferred geometry of the macro-ring and the conformations of the side chains. The most probable macro-ring conformation of 1 is very similar to the preferred conformation of another 16-ring macrolide antibiotic, tylosin. The same order of conformational preference for 1 was estimated with the MM3 and the MM3(pi) methods. Surprisingly, when changing the chirality of the C(9) macro-ring atom of 1, the two methods produced different order of conformational preferences for the 9-epi form (2), as well as enhanced population of several clusters of conformations.  相似文献   

4.
Lettuce seeds were soaked in a 3H-thymidine solution and autoradiogramof sections of these seeds, fixed prior to and after germination(root protrusion), were prepared. Labeled nuclei in intact,punctured, as well as broken seeds began to appear approximatelyat the time of root protrusion. In the nuclei of the radicle,the beginning of 3H-thymidine incorporation precedes the divisionof nuclei by one to two hours, and all the dividing cells incorporate3H-thymidine before their first division. Occasional dividingcells in the epidermis of the hypocotyl were not found to be3H-labeled. In intact seeds, the nuclei observed in the coneof the plumule showed radioactivity approximately 3–4hr after germination, while in punctured and broken seeds the3H-incorporation occurred some hours earlier. (Received December 3, 1962; )  相似文献   

5.
The internodal cell of Chara australis was made tonoplast-freeby internal perfusion with a medium containing a Ca2+-chelatorEGTA and the net H+ efflux across the plasma membrane was estimatedeither by titration of the external medium or by measuring thechange in pH in the external medium. The amount of H+ effluxwas high in the presence of internal ATP and low in its absence.The ATP-dependent net H+ efflux was about 40 nmoles/m2/sec.This amount is smaller than that estimated for the pump currenton the basis of electrical data obtained earlier (3). This discrepancyis discussed. (Received June 18, 1980; )  相似文献   

6.
Compartmental analyses of intact roots of barley (Hordeum vulgareL. cv. Klondike) plants, grown with different levels of NO3(up to 1·0 mol m–3) in the external media, wereundertaken using 13NO3. Two additional treatments, namelysodium dodecyl sulphate (SDS) or brief exposure to high temperature,designed to investigate the identity of the three NO3compartments revealed by compartmental analyses, provided supportfor the identification of the latter as corresponding to superficialsolution, apoplasm, and cytoplasm. Half-lives for exchange ofthese compartments, 3 s, 30 s, and 7 mm, were unaffected bythe level of NO3 provided during growth. Independentestimates of 13NO3 fluxes obtained by direct methodsagreed well with values of fluxes calculated from the compartmentalanalyses. Cytoplasmic [NO3], estimated from the compartmental analyses,were in the range from 1–37 mol m–3, and increasedwith increasing [NO3] of the medium. Such values forcytoplasmic [NO3] are inconsistent with an earlier proposal(Siddiqi, Glass, Ruth, and Rufty, 1990; Glass, Siddiqi, Ruth,and Rufty, 1990) of passive NO3 uptake in the concentrationrange above 10 mol m–3. A model, based upon localizeddistribution of nitrate reductase activity in epidermal cells,is proposed in which the proposed passive low affinity NO uptakeat high external [NO3] is restricted to epidermal cells. During loading periods with 13NO3, significant amountsof 13N were translocated to the shoot. Two pools of 13N, onebeing the root symplasm, appear to participate in the transferof labelled N to the shoot. Key words: Barley, compartmentation, nitrate, nitrate reductase, 13N  相似文献   

7.
Parallel folding pathways in the SH3 domain protein   总被引:2,自引:0,他引:2  
The transition-state ensemble (TSE) is the set of protein conformations with an equal probability to fold or unfold. Its characterization is crucial for an understanding of the folding process. We determined the TSE of the src-SH3 domain protein by using extensive molecular dynamics simulations of the Go model and computing the folding probability of a generated set of TSE candidate conformations. We found that the TSE possesses a well-defined hydrophobic core with variable enveloping structures resulting from the superposition of three parallel folding pathways. The most preferred pathway agrees with the experimentally determined TSE, while the two least preferred pathways differ significantly. The knowledge of the different pathways allows us to design the interactions between amino acids that guide the protein to fold through the least preferred pathway. This particular design is akin to a circular permutation of the protein. The finding motivates the hypothesis that the different experimentally observed TSEs in homologous proteins and circular permutants may represent potentially available pathways to the wild-type protein.  相似文献   

8.
The preferred conformations of N-acetyl-N′-methyl amides of some dialkylglycines have been determined by empirical conformational-energy calculations; minimum-energy conformations were located by minimizing the energy with respect to all the dihedral angles of the molecules. The conformational space of these compounds is sterically restricted, and low-energy conformations are found only in the regions of fully extended and helical structures. Increasing the bulkiness of the substituents on the Cα, the fully extended conformation becomes gradually more stable than the helical structure preferred in the cases of dimethylglycine. This trend is, however, strongly dependent on the bond angles between the substituents on the Cα atom: In particular, helical structures are favored by standard values (111°) of the N-Cα-C′ angle, while fully extended conformations are favored by smaller values of the same angle, as experimentally observed, for instance, in the case of α,α-di-n-propylglycine.  相似文献   

9.
Intestinal neutral NaCl absorption, which is made up ofbrush-border (BB)Na+/H+exchange linked to BBCl/HCO3exchange, is up- and downregulated as part of digestion and diarrhealdiseases. Glucocorticoids stimulate ileal NaCl absorption and BBNa+/H+exchange. Intestinal BB contains twoNa+/H+exchanger isoforms, NHE2 and NHE3, but their relative roles in rabbitileal BBNa+/H+exchange has not been determined. A technique to separate the contribution of NHE2 and NHE3 to ileal BBNa+/H+exchange activity was standardized by using an amiloride-related compound, HOE-694. Under basal conditions, both NHE2 and NHE3 contribute ~50% to ilealNa+/H+exchange. Glucocorticoids (methylprednisolone) increase BBNa+/H+exchange (2.5 times) but increase only ileal NHE3 activity (4.1 times),without an effect on NHE2 activity. Thus ileal BBNa+/H+exchange in animals treated with glucocorticoids is 69% via NHE3. Aquantitative Western analysis for NHE3 was developed, using as aninternal standard a fusion protein of the COOH-terminal 85 amino acidsof NHE3 and maltose binding protein. Glucocorticoid treatment increasedthe amount of BB NHE3. The quantitative Western analysis showed thatNHE3 makes up 0.018% of ileal BB protein in control rabbits and0.042% (2.3 times as much) in methylprednisolone-treated rabbits.Methylprednisolone treatment did not alter the amount of ileal BB NHE2protein. NHE3 turnover number was estimated to be 458 cycles/s underbasal conditions and 708 cycles/s in glucocorticoid-treated ileum. Thusmethylprednisolone stimulates ileal BBNa+/H+exchange activity only by an effect on NHE3 and not on NHE2; it does soprimarily by increasing the amount of BB NHE3, although it alsoincreases the NHE3 turnover number.

  相似文献   

10.
Solvents play a stabilising role with the more stable conformations obtained in polar solvents than in vacuo. We investigate to what extent the structural propensities of the pentacyclo-undecane (PCU) cage polypeptide chain of the type Ac-3Aib-Cage-3Aib-NHMe are influenced in implicit water and in explicit solvents: methanol (MEOH), dimethyl sulphoxide (DMSO) and TIP3P water. The sampling of the α-helical conformations of the PCU cage polypeptide was investigated using the in-house modified PARM94 force-field parameters. Analysis of 50 ns molecular dynamics (MD) simulations revealed a tendency of the PCU cage polypeptide to assume bent structures, especially in polar solvents. The choice of solvents was designed to relate the simulations to physiological conditions. The individual amino-isobutyric acid residues predominantly sampled the right-handed and left-handed 310-helical conformations, indicating that the helical conformations are preferred in all four environments (in vacuo, MEOH, water and DMSO). Additionally, the 100 ns replica exchange MD (REMD) simulations of the PCU cage polypeptide in implicit water revealed more conformational variety present than in explicit solvents, and is more consistent with previous theoretical studies on the PCU cage residue. The present theoretical results may help in rationalising experimental results on these PCU cage polypeptides, and definitely show the importance of a dynamical approach for a correct interpretation and prediction of the conformational behaviour of the PCU cage molecules in different environments.  相似文献   

11.
The potential energy calculations on the sugar-phosphate unit for different puckerings of the sugar are reported in this paper. The results obtained here essentially confirm our earlier predictions made by using criteria of contact distances (hard-sphere potential) and are also supported by observed conformation in crystal structures. The minimum energy conformations of the sugar phosphate unit, along with the preferred orientations of the base with respect to the sugar given in the previous paper, determine the probable conformations of the monomer unit of a polynucleotide (or nucleic acid) chain.  相似文献   

12.
Summary The recent development of three-dimensional NMR spectroscopy has alleviated the problem of overlap of resonances. However, also for the 3D experiments resonance assignment strategies have usually relied upon knowledge about spin systems, combined with information about short (sequential) distances. For doubly (15N/13C)-labelled molecules, a novel assignment strategy has been developed. In this paper we address the possibilities of an assignment strategy for proteins, based solely upon the use of NOE data. For this, the 3D NOE-NOE experiment seems most suitable. Therefore, we have made a theoretical evaluation of double NOE transfer pathways in 28 protein crystal structures. We identify 95 connectivities which are most likely to be observed as cross peaks in a 3D NOE-NOE spectrum of a protein. Given the occurrence of one of these 95 connectivities, we evaluate the chances of occurrence for the others. Analysis of these conditional probabilities allowed the construction of five patterns of related, highly correlated cross peaks which resemble the conventional idea of spin systems to some extent and may provide a basis for assignment and secondary structure analysis from 3D NOE-NOE data alone.Dedicated to the memory of Professor V.F. Bystrov  相似文献   

13.
The use of chlorate as an analogue for NO3 during nitrateuptake into Chara corallina cells has been investigated. NO3inhibits 36C1O3 influx into Chara over the concentrationrange 0–1000 mmol m–3. Lineweaver-Burke plots ofthe data are characteristic of competitive inhibition by NO–3in the low concentration range (0–300 mmol m–3 ClO3)and apparent KINO3 is 140 mmol m–3 which is of a similarorder of magnitude as apparent KmCIO3- 180 mmol m–3. Athigher substrate concentrations the inhibition by NO3was not characteristic of competitive or uncompetitive inhibition. 36C1O3/NO3 influx was dependent on K+ and Ca2+in the external medium and inhibited by FCCP. NO3 pretreatmentor N starvation increased subsequent 36C1O3/NO3influx into Chara. A comparison between rates of net NO3uptake and 36C1O3/NO3 influx supported the previoushypothesis that NO3 efflux is an important componentin the determination of overall uptake rates. Key words: Nitrate, Chara, 36CIO3  相似文献   

14.
The male gametophores of Microdus brasiliensis become fertileafter 48 d on basal medium. EDDH A increases gametophore numberand percentage of fertile gametophores at lower concentrations(10–8-10–6 mol dm–3), whereas EDTA enhancesboth the responses at all levels (10–8-10–4 moldm–3). Their iron salts increase gametophore number aswell as the number of fertile gametophores, and the latter effectis more striking. The number of antheridia per head also increaseswith Fe-EDTA, and at higher concentrations antheridia are induced4 d earlier. EDTA and Fe-EDTA-stimulated antheridia] formationis associated with a corresponding increase in endogenous iron.Copper content increases only at higher levels of EDTA and Fe-EDTA,and there is no correlation with the antheridial induction response.Salicylic acid increases the number of gametophores and thepercentage of fertile gametophores only at lower concentrations(10–8-10–6 mol dm–3), and ferric citrate doesso at all levels. With salicylic acid, antheridia are induced3 d earlier. The number of gametophores as well as the percentageof fertile gametophores increases with the increase in coppersulphate concentration. Co-addition of EDTA (10–5 moldm–3) and copper sulphate inhibits both the responsesat higher levels. Among the chelating agents tried, Fe-EDTAis most effective in enhancing antheridial production. Key words: EDDHA, EDTA, Salicylic acid  相似文献   

15.
  1. Some properties of the IAA-oxidizing activity of lyophilizedcells of Artkrobacter sp. were examined.
  2. 1. IAA oxidationseems not to be catalysed by peroxidase, polyphenoloxidase,laccase or dehydrogenase, but by an oxidase systemdifferentfrom the one reported earlier.
  3. 2. The optimal pH for the oxidizingsystem is ca. 6.0, and thesystem is comparatively stable atpH 5 to 10.
  4. 3. The optimal substrate (IAA) level is 10–3M.
  5. 4. Activity is inhibited by metal-chelating reagents, suchassodium azide, potassium cyanide, sodium diethyldithiocarbamate,potassium xanthogenate and 8-hydroxyquinoline, and sulfhydrylreagents, such as iodoacetamide, monofluoroacetic acid, p-chloromercuribenzoate,isatin, ß-naphthoquinone and ß-naphthoquinone-4-sulfonate.Hydroxybenzoic acid, sulfosalicylic acid and 2,4-dichlorophenolare also inhibitory.
  6. 5. None of the IAA analogs tested (indole,skatole, 2,3-dihydroxyindole,indole-3-aldehyde, -3-carboxylicacid, -3-propionic acid, -3-lacticacid, -3-butyric acid, 5-hydroxyindole-3-aceticacid and D,L-tryptophan) are oxidized by the cells, and someanalogs (indole-3-carboxylicacid, -3-propionic acid, -3-butyricacid, 5-hydroxyindole-3-aceticacid, naphthalene-acetic acidand 2,4-D) are inhibitory at comparativelyhigh concentrations.
  7. 6. The oxidizing activity is not stimulated by Mn++ and isinhibitedby Co++, Cu++ and Hg++.
  8. 7. The oxidizing activitydisappears completely within 6 hrat 30, but is kept unchangedat least for two weeks at –20.
(Received August 7, 1967; )  相似文献   

16.
The allowed conformations of the μ-receptor-selective cyclic opioid peptide analog were determined using a grid search through the entire conformational space. Energy minimization of the 13-membered ring structure lacking the exocyclic Tyr1 residue and the Phe3 side chain using the molecular mechanics program Maximin resulted in only four low-energy conformations. These four ring structures served as templates for a further energy minimization study with the Tyr1 residue and Phe3 side chain added to the molecule. The results indicated that the Tyr1 and Phe3 side chains enjoy considerable orientational freedom, but nevertheless, only a limited number of low-energy side-chain configurations were found. The obtained low-energy conformers are discussed in relation to various proposed models of the bioactive conformation of enkephalins and morphiceptin.  相似文献   

17.
Three distinct mechanisms of HCO3- secretion in rat distal colon   总被引:1,自引:0,他引:1  
HCO3 secretion has long been recognized in the mammalian colon, but it has not been well characterized. Although most studies of colonic HCO3 secretion have revealed evidence of lumen Cl dependence, suggesting a role for apical membrane Cl/HCO3 exchange, direct examination of HCO3 secretion in isolated crypt from rat distal colon did not identify Cl-dependent HCO3 secretion but did reveal cAMP-induced, Cl-independent HCO3 secretion. Studies were therefore initiated to determine the characteristics of HCO3 secretion in isolated colonic mucosa to identify HCO3 secretion in both surface and crypt cells. HCO3 secretion was measured in rat distal colonic mucosa stripped of muscular and serosal layers by using a pH stat technique. Basal HCO3 secretion (5.6 ± 0.03 µeq·h–1·cm–2) was abolished by removal of either lumen Cl or bath HCO3; this Cl-dependent HCO3 secretion was also inhibited by 100 µM DIDS (0.5 ± 0.03 µeq·h–1·cm–2) but not by 5-nitro-3-(3-phenylpropyl-amino)benzoic acid (NPPB), a Cl channel blocker. 8-Bromo-cAMP induced Cl-independent HCO3 secretion (and also inhibited Cl-dependent HCO3 secretion), which was inhibited by NPPB and by glibenclamide, a CFTR blocker, but not by DIDS. Isobutyrate, a poorly metabolized short-chain fatty acid (SCFA), also induced a Cl-independent, DIDS-insensitive, saturable HCO3 secretion that was not inhibited by NPPB. Three distinct HCO3 secretory mechanisms were identified: 1) Cl-dependent secretion associated with apical membrane Cl/HCO3 exchange, 2) cAMP-induced secretion that was a result of an apical membrane anion channel, and 3) SCFA-dependent secretion associated with an apical membrane SCFA/HCO3 exchange. chloride/bicarbonate exchange; short-chain fatty acid/bicarbonate exchange; anion channel; pH stat  相似文献   

18.
Tritiated GA1 and four of its synthetic derivatives were studiedin relation to their biological activity, uptake and metabolismby barley aleurone layers. Incubation was done in the presenceand absence of ABA. Tentative identification of some of themetabolites was made by TLC and GLC radiocounting of the metaboliteand its acid hydrolyzed derivative. Only GA1 promoted -amylase synthesis. Uptake ranged from 20to 42%, varying with the derivative. ABA enhanced uptake of[3H]GA1 and [3H]pseudoGA1 and inhibited uptake of [3H]ketoGA1the Wagner-Meerwein rearrangement product of [3H]GA1 Uptakeof [3H]GA1 methyl ester ([3H]GA1-Me) and [3H]dihydroGA1 wasunaffected by ABA. [3H]GA1 was converted to an amphoteric GA1 derivative ([3H]amphoGA1)and [3H]GA1-glycosyl ester. GA1-Me was metabolized to four products,all of them GA1 derivatives, including an apparent amphotericGA1 derivative. DihydroGA1 was quite stable; only one metabolitewas produced in sufficient yield to analyze. This product didnot cochromatograph with either of the expected acid hydrolyzedepimers of [3H]dihydroGA1. [3H]ketoGA1 was readily metabolizedto one product, probably the glycoside. [3H]pseudoGA1 remainedessentially unmetabolized. Metabolism of all compounds testedwas not dramatically affected by ABA. Surprisingly, no metabolitesfrom hydroxylation at the 2-position were found. 1 Present address: Monsanto Agricultural Co., 800 N. LindberghBlvd., St. Louis, MO 63166, U.S.A. (Received January 31, 1977; )  相似文献   

19.
Chronichypokalemia increases the activity of proximal tubule apical membraneNa+/H+antiporter NHE3. The present study examined the effect ofthe incubation of OKP cells (an opossum kidney, clone P cell line) incontrol medium {K+ concn([K+]) = 5.4 mM} or low-K+ medium([K+] = 2.7 mM) onNHE3. The activity of an ethylisopropyl amiloride-resistant Na+/H+antiporter, whose characteristics were consistent with those ofNHE3, was increased inlow-K+ cells beginning at 8 h.NHE3 mRNA and NHE3 protein abundance were increased 2.2-fold and 62%,respectively, at 24 h but not at 8 h. After incubation inlow-K+ medium, intracellular pH(pHi) decreased by 0.27 pH units(maximum at 27 min) and then recovered to the control level.Intracellular acidosis induced by 5 mM sodium propionate increasedNa+/H+antiporter activity at 8 and 24 h. Herbimycin A, a tyrosine kinase inhibitor, blocked low-K+- andsodium propionate-induced activation of theNa+/H+antiporter at 8 and 24 h. Our results demonstrate thatlow-K+ medium causes an earlydecrease in pHi, which leads to anincrease in NHE3 activity via a tyrosine kinase pathway.  相似文献   

20.
Manufacture of VAQTA®, an inactivated hepatitis A vaccine, uses state-of-the-art technologies in cell culture and bioprocessing science, which have made it possible to routinely produce the vaccine at manufacturing scale. VAQTA® consists of an attenuated strain of hepatitis A virus that is highly purified and formaldehyde-inactivated, then formulated with an aluminum hydroxide adjuvant. Process development and scale-up have resulted in a well-characterized vaccine manufacturing process with appropriate in-process controls to assure consistent performance, and a reproducible, well-defined product. Results are presented from a series of manufacturing demonstration lots to show consistency, as well as comparability to clinical lots prepared at an earlier stage in development.  相似文献   

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