The crystal and molecular structures of dichloro [N,O-(D,L)-diaminopropionic acid] platinum(II) and Dichloro [N,O-(L)-lysine] platinum(II) monohydrate

K₂PtCl₄ reacts with L-lysine and with D,L-diaminiopropionic acid (Dap) forming the neutral complexes [PtCl₂(N,O-Lys)]·H₂0 (1) and [PtCl₂(N,O-Dap)], (2) respectively.Compound 1 is monoclinic, space group P2₁ with a = 11.262(3), b = 11.041(2), c = 9.690(2) Å, β = 102.07(5)°, V = 1178(1) ų and Z = 4. Compound 2 is monoclinic, space group P2₁/n with a = 8.777(1), b = 10.615(2), c = 7.947(1) Å, β = 94.98(3)°, V = 738(1) ų and Z = 4. In both compounds, the zwitterionic ligands form an N,O-five membered chelate with the platinum atom. Structures 1 and 2 were refined to R values of 3.3% and 6.3% respectively.     

Syntheses of iron(III) aroyl hydrazones containing pyridoxal and salicylaldehyde. The crystal and molecular structure of two iron(III)-pyridoxal isonicotinoyl hydrazone complexes

Iron(III) complexes of three aroyl hydrazones, pyridoxal isonicotinoyl hydrazone (H₂pih), pyridoxal benzoyl hydrazone (H₂pbh), and salicylaldehyde benzoyl hydrazone (H₂sbh), were synthesized and characterized. In aqueous medium at pH 7, [Fe(pih)(Hpih)]·3H₂O is formed. In acidic methanol, a 1:1 ligand-to-metal complex is formed, [FeCl₂(H₂pih)]Cl (1), whereas in aqueous medium at low pH cis-[FeCl₂(H₂pih)(H₂O)]Cl·H₂O (2) is formed. Compounds 1 and 2 are high-spin d⁵ with μ_eff = 5.88 μ_B and 5.93 μ_B (298 K). The crystal structures of 1 and 2 show that H₂pih acts as a tridentate neutral ligand in which the phenolic and hydrazidic protons have shifted to the pyridine nitrogen atoms. The co- ordination polyhedron of 1 is ‘square’ pyramidal, whereas that of 2 is pseudo-octahedral. Compound 1 is triclinic, space group P$\text{l}$, with a = 12.704(2) Å, b = 8.655(2) Å, c = 8.820(2) Å, α = 105.42(1)°, β = 89.87(1)°, γ = 107.60(1)°, V = 888 ų, and Z = 2; 2 is monoclinic, space group P2₁/c, with a = 15.358(4) Å, b = 7.304(3) Å, c = 17.442(4) Å, β = 101.00(2)°, V = 1921 ų, and Z = 4.     

New preparations and molecular structures of cis-MCl2(Ph2PCH2PPh2)2, M = Ru,Os and trans-RuCl2(Ph2PCH2PPh2)2

The title compounds were made by reacting bis(diphenylphosphino)methane (dppm) with reduced solutions of OsCl₆^4? and Ru₂OCl₁₀^4?. The crystal and molecular structures of these compounds have been determined form three-dimensional X-ray study. The cis-isomers crystallize with one CHCl₃ per molecule of the complex. All three compounds crystallize in the monoclinic space group P2₁/n with unit cell dimensions as follows: Cis-OsCl₂(dppm)₂·CHCl₃: a = 13.415(4) Å, b = 22.859(4) Å, c = 16.693(3) Å, β = 105.77(3)°, V = 4926(3) ų, Z = 4. cis-RuCl₂(dppm)₂·CHCl₃: a = 13.442(3) Å, b = 22.833(7) Å, c = 16.750(4) Å, β = 105.53(2)°, V = 4953(3) ų, Z = 4. trans-RuCl₂(dppm)₂: a = 11.368(7) Å, b = 10.656(6) Å, c = 18.832(12) Å; β = 103.90(6)°, V = 2213(7) ų; Z = 2. The structures were refined to R = 0.044 (R_w = 0.055) for cis-OsCl₂(dppm)₂·CHCl₃; R = 0.065 (R_w = 0.079) for cis-RuCl₂(dppm)₂·CHCl₃ and R = 0.028 (R_w = 0.038) for trans-RuCl₂(dppm)₂. The complexes are six coordinate with stable four-membered chelate rings. The PMP angle in the chelate rings is ca. 71° in each case.     

Crystal structures of three thiourea (tu) complexes of Pt(II): trans-[(tu)2Pt(NH3)2]Cl2, trans-[(tu)2Pt(CH3NH2)2]Cl2·3H2O and [Pt(tu)4]Cl2

The structures of three Pt(II) thiourea complexes, trans-[(tu)₂Pt(NH₃)₂]Cl₂ (1), trans-[(tu)₂Pt(CH₃NH₂)₂]Cl₂·3H₂O (2) and [Pt(tu)₄]Cl₂ (3), have been determined by X-ray diffraction and refined to R = 0.049 for 1026 reflections (1), R = 0.057 for 2547 reflections (2) and R = 0.046 for 2792 reflections (3). All the compounds crystallize in the space group P2₁/c and have cell dimensions: a = 5.437(1), b = 6.450(1), c = 17.980(3) Å, β = 96.05(2)°, Z = 2 (compound 1); a = 9.225(1), b = 15.404(2), c = 12.601(2) Å, β = 105.39(2)°, Z = 4 (compound 2); and a = 9.051(6), b = 10.203(6), c = 18.263(8) Å, β = 91.12(8)°, Z = 4 (compound 3). The unit cell of 1 and 3 contains only a single type of cation, while that of 2 is formed from two independent cations. In 1 and 2 the coordination spheres of the Pt atoms are rather similar, with angles close to 90° and coplanarity of the metal and respective donor atoms. Instead, in 3 the four sulfur atoms, which surround the Pt, display a slight distortion (0.06 Å from the mean plane) towards tetrahedral.     

Crystal structures of α- and β-(1,10-phenanthroline)tetrahydroborato(triphenylphosphine)copper(I) and (2,9-dimethyl-4,7-diphenyl-1,10-phenanthroline)tetrahydroboratocopper(I)

Copper(I) is five coordinate in (1,10-phenanthroline)tetrahydroborato(triphenylphosphine)copper(I). This compound crystallizes from either toluene as the yellow, α-form, a = 16.247(8), b = 9.750(7), c = 9.322(5) Å, α = 62.92(4), β = 84.77(4), γ = 84.34(5)°, triclinic P$\text{1}$, Z = 2, or from a xylene/methylene chloride mixture as the red β-form, X-ray cell, a = 13.675(11), b = 10.115(8), c = 9.700(7) Å, α = 95.22(6), β = 96.22(6), γ = 101.02(6)°; neutron cell, as the tetradeuteroborate, a = 13.703(1), b = 10.096(8), c = 9.74(1) Å, α = 95.23(9), β = 96.51(8), γ = 101.04(2)°, triclinic, P$\text{1}$, Z = 2. For both forms, unidentate triphenylphosphine, bidentate 1,10-phenanthroline and unsymmetrical bidentate BH₄^? completes the copper(I) coordination but there are subtle differences between the two. When the ligand 2,9-dimethyl-4,7-diphenyl-1,10-phenanthroline, dmdp, replaces 1,10-phenanthroline, the compound obtained is four coordinate with no tpp in the crystal. [C(dmdp)BH₄] is monoclinic, Cc, a = 14.522(4), b = 20.07(2), c = 7.718(2) Å, β = 106.17(2)°, Z = 4.     

The preparation and x-ray crystal structures of bis(4R-oxazolidine-4′-carboxylato)copper(II) (R = methyl,phenyl)

The base-catalyzed condensation reactions of formaldehyde with the copper(II) chelates of α-alanine and C-phenylglycine result in the formation of bis(4R-oxazolidine-4′-carboxylato)copper(II) where R = methyl and phenyl respectively. The 4-methyl complex, C₁₀H₂₀N₂O₈Cu, crystallizes in the monoclinic space group P2₁/n with a = 9.141(2), b = 7.335(3), c = 11.112(3) Å, β = 103.87(2)° and Z = 2. The structure has been refined to R = 0.026 and R_w = 0.031 based on 749 independent reflections collected, 651 used. The geometry about copper is essentially a (4 + 2)-elongated octahedral structure. The 4-phenyl derivative, C₂₀H₂₀N₂O₆Cu, crystallizes in the monoclinic space group P2₁/c with a = 11.939(4), b = 8.887(2), c = 8.611(3) Å, β = 95.61(3)° and Z = 2. Refinement of the structure converged to R = 0.062 and R_w = 0.071 based on 1003 reflections collected and 865 used. The structure of the 4-phenyl complex resembles that of the 4-methyl derivative and differs mainly from the latter in being anhydrous.     

Synthesis and spectroscopic properties of CpRuCl(R-DAB(4e)) and CpRuCo(CO)3(R-DAB(6e)). Part XVII. X-ray structure determination of CpRuCo(CO)3(t-Bu-DAB(6e))

CpRuCl(PPh₃)₂ reacted with excess R-DAB in refluxing toluene to give CpRuCl(R-DAB(4e)) (1a: R = i-Pr; 1b: R = t-Bu; 1c: R = neo-Pent; 1d: R =p-Tol). ¹H NMR and ¹³C NMR spectroscopic data indicated that in these complexes the R-DAB ligand is bonded in a chelating 4e coordination mode.Reaction of 1a and 1b with one equivalent of [Co(CO)₄]⁻ afforded CpRuCo(CO)₃(R-DAB(6e)) (2a: R = i-Pr; 2b: R = t-Bu). The structure of 2b was determined by a single crystal X-ray structure determination. Crystals of 2b are monoclinic, space group P2₁/n, with four molecules in a unit cell of dimensions: a = 16.812(4), b = 12.233(3), c = 9.938(3) Å and β = 105.47(3)°. The structure was solved via the heavy atom method and refined to R = 0.060 and R_w = 0.065 for the 3706 observed reflections. The molecule contains a RuCo bond of 2.660(3) Å and a cyclopentadienyl group that is η⁵-coordinated to ruthenium [RuC(cyclopentadienyl) = 2.208(3) Å (mean)]. Two carbonyls are terminally coordinated to cobalt (CoC(1) = 1.746(7) and CoC(2) = 1.715(6) Å) while the third is slightly asymmetrically bridging the RuCo bond (RuC(3) = 2.025(6) and CoC(3) = 1.912(6) Å). The RuC(3)O(3) and CoC(3)O(3) angles are 138.4(5)° and 136.5(5)°, respectively. The t-Bu-DAB ligand is in the bridging 6e coordination mode: σ-N coordinated to Ru (RuN(2) = 2.125(4) Å), μ₂-N′ bridging the RuCo bond and η²-CN coordinated to Co (RuN(1) = 2.113(5), CoN(1) = 1.941(4) and CoC(4) = 2.084(5) Å). The η²-CN′ bonded imine group has a bond length of 1.394(7) Å indicating substantial π-backbonding from Co into the anti-bonding orbital of this CN bond.¹H NMR spectroscopy indicated that 2a and 2b are fluxional on the NMR time scale. The fluxionality of 6e bonded R-DAB ligands is rarely observed and may be explained by the reversible interchange of the σ-N and η²-CN′ coordinated imine parts of the R-DAB ligand.     

Potential multifunctional anti-cancer metal complexes. I. Synthesis and x-ray structural studies of some dinuclear rhodium(II) carboxylate complexes with diamine-substituted acridine ligands in terminal coordination positions

The preparations are reported of [Rh(RCO₂)₂L]₂ [where R = CH₃, C₂H₅, and CH₃OCH₂; L = 6-chloro-2-methoxy-9-[2(NR′₂)ethyl]aminoacridine (R′ = H, CH₃)]. X-ray structural studies have been carried out on two of the compounds [ R = C₂H₅, R′ = H, (1); R = CH₃, R′ = CH₃, (2)]. Compound 1 is monoclinic, space group C2/c, with a = 20.864(11), b = 15.736(4), c = 14.402(4) Å, β = 93.14(4)°, V = 4721 ų, and Z = 4; 2 is monoclinic, space group P2₁/n, a = 8.861(2), b = 23.089(10), c = 12.014(2) Å, β = 105.84(2)°, V = 2365 ų, and Z = 2. Both compounds comprise the standard dinuclear rhodium(II) carboxylate unit with the substituted acridine ligands coordinated to rhodium in the axial positions, via the NH₂ group nitrogen in 1 and the N(CH₃)₂ nitrogen in 2.The dimethyl substitution on the tertiary amine group in 2, and an associated conformational change in the diamine chain, result in an increased separation of the acridine ligand from the metal centre. There is a pronounced acridine base stacking in 1 but not in 2.     

Synthesis,crystal structure,and conformation of 1(S)-acetoxy-3-[6(R)-O-benzyl-1,2:3,4-di-O-isopropylidene-α-d-galactopyranos-6-yl]-1-(methyl 2,3,4-tri-O-benzyl-6-deoxy-β-d-galactopyranosid-6-yl)propyne

Condensation of 6-O-benzyl-7,8-dideoxy-1,2:3,4-di-O-isopropylidene-d-glycero-α-d-galacto-oct-7-ynopyranose with methyl 2,3,4-tri-O-benzyl-6-deoxy-β-d-galacto-heptodialdo-1,5-pyranoside afforded a 2:1 mixture of the 1S and 1R isomers (1a and 1b) of 3-[6(R)-O-benzyl-1,2:3,4-di-O-isopropylidene-α-d-galactopyranos-6-yl]-1-hydroxy-1-(methyl 2,3,4-tri-O-benzyl-6-deoxy-β-d-galactopyranosid-6-yl)propyne. A single crystal of the 1-O-acetyl derivative (1c) of 1a was investigated by X-ray diffraction methods in a four-circle diffractometer. Compound 1c crystallises in the monoclinic system, space group P2₁ (Z = 2) with cell dimensions a = 14.896(2), b = 8.295(1), c = 20.547(3) Å, and β = 102.66(1)°. The structure was solved by direct methods and refined by a full-matrix, least-squares procedure against 3839 unique reflections (F > 2σ_F), resulting in a final R = 0.045 (unit weights). The configuration at the new chiral center (C-1) was established as S(d). The galactopyranose rings have conformations ⁴C₁ (tri-O-benzylated moiety) and °S₅ + °T₂ (di-O-isopropylidenated moiety). The 1,2- and 3,4-O-isopropylidene rings have ³T₂ and ²E conformations, respectively.     

Metal-phenoxyalkanoic acid interactions. Part 15. The crystal structures of diaquabis(phenoxyacetato)cadmium(II) and catena-μ-[aquabis(phenoxyacetato-O)lead(II)-bis(phenoxyacetato)lead(II)]

The crystal structures of the cadmium(II) and lead(II) complexes of phenoxyacetic acid (PAH) have been determined by single crystal X-ray diffraction techniques. The cadmium complex, [Cd(PA)₂(H₂O)₂] (1), space group C2, with Z = 2 in a cell of dimensions, a = 11.801(2), b = 5.484(1), c = 13.431(3) Å, β = 100.87(2)°, possesses a distorted trapezoidal bipyramidal coordination around the metal atom, involving two water oxygens [2.210(5) Å] and four carboxyl oxygens from two symmetrical bidentate phenoxyacetate ligands [2.363(4), 2.365(4) Å] with Cd lying on the crystallographic two- fold axis. The lead complex, [Pb₂(PA)₄(H₂O)]_n(2) is triclinic, space group P$\text{1}$, Z = 2, with a cell of dimensions, a = 10.135(4), b = 10.675(3), c = 19.285(9) Å, α = 114.66(3), β = 91.94(3) and γ = 114.99(3)°. (2) is a two-dimensional polymer with a repeating dimer sub-unit. The first lead [Pb(1)] has an irregular MO₈ coordination [2.34?2.96(2) Å: mean, 2.63(2) Å] involving the water molecule, two oxygens from an asymmetric bidentate carboxylate group, two from a bidentate chelate [O(ether), O(carboxylate)] group and three from bridging oxygens, one of which also provides a polymer link to another symmetry generated lead. The second lead [Pb(2)] is irregular seven-coordinate [PbO, 2.48?2.73(2) Å: mean, 2.61(2) Å] with three bonds from the bridging groups, two from an unsymmetrical bidentate carboxylate (O, O′) group and one from a second carboxyl group which also bridges two Pb(2) centres in the polymer.     

Reactions of Nb2Cl6(SMe2)3 and Ta2Cl6(SMe2)3 with compounds containing NN single bonds

Ta₂Cl₆(SMe₂)₃ reacts with PhHNNHPh to afford Ta₂Cl₄(μ-Cl)₂(μ-PhN)(PhNH₂)₃ (1) a compound with a Ta^IVTa^IV single bond, with a length of 2.644(1) Å. The compound crystallizes in space group Pnma with unit cell dimensions a = 22.960(8), b = 16.875(4), c = 6.367(3) Å, V = 2467(1) ų, and Z = 4. The reaction of Nb₂Cl₆(SMe₂)₃ with PhHCNNCHPh, merely on mixing at room temperature produced Nb₂Cl₆(SMe₂) [PhHC(N)PhHCNHNCHPh]·C₇H₈ (2) as large red crystals in ca. 50% yield. The molecule consists of two Nb^IV atoms, one six-coordinate and the other seven-coordinate, united by three bridging atoms (Cl, Cl, N) and a NbNb bond of length 2.681(1) Å. The way in which the tridentate triazo ligand is generated is completely obscure. Crystallographic data for 2: space group P2₁/n with a = 11.393(3), b = 11.988(3), c = 27.233(7) Å, β = 100.75(2)°, V = 3654(3) Å, and Z = 4.     

The synthesis and structural characterization of (2-pyridyldiphenylphosphine oxide)platinum(IV)tetrabromide. A chelating phosphine oxide with a substantially bent PtOP angle

The complex (pyPh₂PO)PtBr₄ (pyPh₂PO is 2-pyridyldiphenylphosphine oxide) has been synthesized by three different pathways, and its structure has been established by X-ray crystallography. C₁₇H₁₄Br₄NOPPt crystallizes in the space group P2₁/c (no. 14) with cell dimensions (at 140 K) of a = 13.696(7), b= 16.653(5), c = 17.612(7) Å, β = 92.23(4)°, Z = 8 and V = 3993(3) ų. The structure was refined by block-cascade least-squares to a conventional R value of 0.048 using 3647 significant data. The structure involves a six-coordinate platinum((IV) ion with the chelated ligand bound through its nitrogen and oxygen atoms. The two crystallography independent molecules in the asymmetric unit have very similar dimensions. To our knowledge this is the first reported structure of a chelating phosphine oxide. The PtOP angles within the rings are 114.4(6)° and 117.4(6)°.     

The crystal structures of four models for the binding to DNA of cisplatinum derivatives containing a bidentate tertiary diamine

The compounds cis-[(TMED)Pt(9-MeG)₂](PF₆)₂· 2H₂O (1), cis-[(TMED)Pt(9-EtG)₂](ClO₄)₂·2H₂O(2). cis-[(TMED)Pt(DMX)₂](PF₆)₂·4H₂O (3) and cis-[(TMED)Pt(TMX)₂](PF₆)₂·xH₂O (x ≈ 4) (4), where TMED = N,N,N′,N′-tetramethylethylenediamine, 9-MeG = 9-methylguanine, 9-EtG = 9-ethylguanine, DMX = 1,3-dimethylxanthine and TMX = 1,3,9-trimethylxanthine, have been prepared and structurally characterized by X-ray methods. Compound 1 crystallises in space group Pn, with a = 10.675(1), b = 12.970(1), c = 12.016(1) Å, β = 97.05(1)°, Z = 2. Compound 2 crystallizes in space group Pbca, with a = 13.886(1), b = 31.742(4), c = 14.958(2) Å, Z = 8. Compound 3 crystallizes in space group C2/c, with a = 37.557(4), b = 12.215(2), c = 15.823(3) Å, β = 90.47(1)°, Z = 8. Compound 4 cyrstallises in the space group C2/c, with a = 38.516(5), b = 12.078(2), c = 16.219(2) Å, β = 97.88(1)°, Z = 8. Compounds 3 and 4 are structurally similar. Each [(TMED)Pt(Base)₂]²⁺ cation shows square-planar coordination to Pt with the two independent purine ligands coordinated through N7 and arranged in a head-to-tail conformation. The structures are compared with each other and with related compounds in terms of their base/base and base/coordination plane dihedral angles, and their different crystalline environments.     

Crystal and molecular structure of 1′,2:4,6-di-O-isopropyl-idenesucrose tetra-acetate: a unique example of a d-fructofuranosyl ring in a sucrose derivative puckered at oxygen

Crystals of the title compound are monoclinic, space group P2₁, with cell dimensions: a = 11.260(5), b = 8.841(7), c = 15.605(6) Å, β = 102.25(7)°, and Z = 2; 2888 independent reflections, measured on a diffractometer, have been refined to R = 0.055 in the molecule, the pyranosyl ring has the expected ⁴C₁ conformation. However, the conformation of the d-fructofuranosyl ring is unexpected [P = 277.1°] with O-2′ exo to C-6′ furthest from the ring plane. The reason for this conformation, previously unknown in sucrose-related molecules, is not readily apparent from the crystal structure the eight-membered ring, however, has the expected boat-chair conformation.     

Crystallization and preliminary X-ray diffraction study of the green flavoenzyme 5-Hydroxyvaleryl-CoA dehydratase/dehydrogenase from Clostridium aminovalericum

The bifunctional flavoenzyme 5-hydroxyvaleryl-CoA dehydratase/ dehydrogenase has been crystallized from solutions containing ammonium sulfate (form I) or polyethylene glycol (form II) as precipitant. In both cases, the crystals grew in the monoclinic space group C2. The unit cell dimensions for form I crystals were determined as a = 162.8 Å, b = 71.8 Å, c = 83.5 Å, β = 109.1°. Corresponding values for form II crystals were a = 161.2 Å, b = 71.6 Å, c = 82.2 Å, β = 109.3°. In both cases most probably there are two monomers per asymmetric unit. The crystals diffract to about 2 Å resolution and are rather stable in the X-ray beam. © 1994 Wiley-Liss, Inc.     

Oxo-bridged Ta(+3) dimers, (TaCl2L2)2(μ-O)(μ-SR2), revisited. Structural differences between isoelectronic μ-O and μ-OH complexes

The compounds Ta₂Cl₄(dmpe)₂(μ-Me₂S)(μ-O) (1) and Ta₂Cl₄(py)₄(μ-THT)(μ-O) (2) where dmpe = Me₂PCH₂CH₂PMe₂ and THT = tetrahydrothiophene, have been prepared and structurally characterized. They are authentic examples of μ-O bridged Ta^IIITa^III edge-sharing bioctahedral complexes. Their structures are virtually identical with respect to all of the bonds that they have in common. However, the structure of 1 differs significantly in its TaTa, TaO and one type of TaCl distance from the previously reported Ta₂Cl₄(dmpe)₂(μ-Me₂S)(μ-O)·HCl (3). These differences show that in 3 there is a μ-OH group hydrogen bonded to a Cl⁻ ion. The structural differences attendant upon the μ-OH ⇌ μ-O change are of general interest and are discussed. The crystallographic data for the new compounds are as follows: 1: monoclinic (P2₁/c) with a = 10.412(2), b = 14.749(2), c = 22.177(3) Å, β = 99.25(1)°, V = 3361(1) ų and Z = 4. 2: monoclinic (P2₁/a) with a = 18.238(4), b = 10.402(3), c = 19.070(2) Å, β = 95.37(2), V = 3602(2) ų and Z = 4.     

Structural comparison of (CuICH3CN4·dibenzo-18-crown-6 (I) and (CuICH3CN)x (II) fluorescent copper(I) materials

The single crystal X-ray structures of (CuICH₃CN₄·dibenzo-18-crown-6 (I) and (CuICH₃CN) (II) have been determined at room temperature [(I) C₂₈H₃₆Cu₄I₄N₄o₆, monoclinic space group P2₁/n, a = 10.116(4), b = 18.092(8), c = 22.211(9) Å, β = 98.66(3)°, Z = 4; (II) C₂H₃CuIN, orthorhombic pBN2₁, a = 13.618(8), b =8.742(2), c = 4.298(2), Z = 4]. (I) exists as a distorted cube with copper and iodine at alternate corners, the fourth coordination site copper occupied by an acetonitrile molecule coordinated through nitrogen. The cluster contains no crystallographic symmetry element and CuCu distances average 2.770(5) Å. The dibenzo-18-crown-6 displays only second sphere type interactions with cluster. (II) displays a pleated double chain type structure with distorted rectangles of alternating Cu and I atoms sharing opposite edges in infinite array. Copper displays tetrahedral geometry by coordination to three iodine atoms and a nitrogen bound acetonitrile molecule.     

Crystal structure of 4-(N-acetyl,2,3,4-tri-O-acetyl-β-l-arabinopyranosylamino)azobenzene

The crystals of the title compound, C₂₅H₂₇N₃O₈ (M_r497.55), are monoclinic, space group P2₁ with a = 11.680(2), b = 8.089(1), c = 13.804(3) Å, β = 92.52(2)°, V = 1302.7 ų, and Z = 2; D_c = 1.27 g.cm⁻³. The structure was solved by using direct methods. The refinement of all non-hydrogen atom parameters yielded R = 0.050. The compound has normal geometry with the ¹C₄ conformation of the pyranoid ring and the extended trans conformation of the azobenzene moiety.     

Differences in crystal properties and ligand affinities of an antifluorescyl fab (4-4-20) in two solvent systems

An antigen-binding fragment (Fab) from a murine monoclonal antibody (4-4-20) with high affinity for fluorescein was cocrystallized with ligand in polyethylene glycol (PEG) and 2-methl-2,4-pentanediol (MPD) in forms suitable for X-ray analyses. In MPD the affinity of the intact antibody for fluorescein was 300 times lower than the value (3.4 × 10¹⁰ M^?1) obtained in aqueous buffers. This decreased affinity was manifested by the partial release of bound fluorescein when MPD was added to solutions of liganded Feb during crystallization trials, In PEG, the ligand remained firmly bound to the protein. The liganded Feb crystallized in the monoclinic space group P2₁ in PEG, with a = 58.6, b = 97.2, c = 44.5 Å and β = 95.2°. In MPD the space group was triclinic P1, with a = 58.3, b = 43.4, c = 42.3 Å, α = 83.9°, β = 87.6°, and γ = 84.5°. X-ray diffraction data were collected for both forms to 2.5-Å resolution. Surprisingly, the triclinic form of the liganed antifluorescyl Feb had the same space group, closely similar cell dimensions, and practically the same orientation in the unit cell as an unliganded Fab (BV04-01) with activity against single-stranded DNA.