Ecological observations on epomorphorine fruit-bats (Megachiroptera) in West African savanna woodland

Three species of Megachiroptera were studied in Mole National Park, Ghana, by systematic netting in various habitats and by observations of bats in the field and in captivity. This study, undertaken in July-August 1974 and 1975, is a preliminary attempt to elucidate how these species partition the resources available to them, with particular emphasis upon roosting habits, food resources, and temporal and spatial differences in foraging behaviour. All three species give birth towards the beginning of the wet season and are probably polyoestrus. The larger species, Epomophorus gambianus , does not appear to compete with the other two due to differences in roosting habits and the food resources available to it consequent upon its larger size. The two smaller species, Micropteropus pusillus and Nanonycteris veldkampi , are similar in size. N. veldkampi is presumed absent from Mole in the dry season when food is scarce; in the wet season it may minimise competition by being better adapted for nectarivory, foraging later, and foraging at a greater height than M. pusillus.     

Phylogeography of three closely related African bovids (tribe Alcelaphini)

The phylogeography of three species of African bovids, the hartebeest (Alcelaphus buselaphus), the topi (Damaliscus lunatus), and the wildebeest (Connochaetes taurinus), is inferred from sequence variation of 345 sequences at the control region (d-loop) of the mtDNA. The three species are closely related (tribe Alcelaphini) and share similar habitat requirements. Moreover, their former distribution extended over Africa, as a probable result of the expansion of open grassland on the continent during the last 2.5 Myr. A combination of population genetics (diversity and structure) and intraspecific phylogeny (tree topology and relative branch length) methods is used to substantiate scenarios of the species history. Population dynamics are inferred from the distribution of sequence pairwise differences within populations. In the three species, there is a significant structuring of the populations, as shown by analysis of molecular variance (AMOVA) pairwise and hierarchical differentiation estimations. In the wildebeest, a pattern of colonization from southern Africa toward east Africa is consistent with the asymmetric topology of the gene tree, showing a paraphyletic position of southern lineages, as well as their relatively longer branch lengths, and is supported by a progressive decline in population nucleotide diversity toward east Africa. The phylogenetic pattern found in the topi and the hartebeest differs from that of the wildebeest: lineages split into monophyletic clades, and no geographical trend is detected in population diversity. We suggest a scenario where these antelopes, previously with wide pan-African distributions, became extinct except in a few refugia. The hartebeest, and probably also the topi, survived in refugia north of the equator, in the east and the west, respectively, as well as one in the south. The southern refugium furthermore seems to have been the only place where the wildebeest has survived.     

Phylogeography of the African catfish,Chrysichthys maurus (Valenciennes, 1839)

Polymorphism at 19 allozyme loci was studied in 227 individuals of the catfish, Chrysichthys maurus (Valenciennes, 1839), collected from ten populations representing nine different river basins in west Africa. Eleven of the loci studied were polymorphic. Analysis showed that populations clustered according to their geographical origin: eastern populations close to the root represented by a population of a closely related species (C. auratus); then populations from the centre of the species' range, followed by the more western populations. Networks observed, regression of genetic distances versus geographical distances, results of the Mantel test as well as the apomorphic status of two alleles suggested that the genetic differentiation corresponds to an isolation by distance model. These results strongly suggest that the populations initially occurred in the lagoons and rivers of Ivory Coast and from here spread to the western part of the species' range by progressively colonising basins from east to west.     

Phylogeography of two cryptic species of African desert jerboas (Dipodidae: Jaculus)

The lesser Egyptian jerboa Jaculus jaculus is a desert dwelling rodent that inhabits a broad Arabian–Saharan arid zone. Recently, two distant sympatric lineages were described in North‐West Africa, based on morphometric and molecular data, which may correspond to two cryptic species. In the current study, phylogenetic relationships and phylogeographical structure among those lineages and geographical populations from North Africa and the Middle East were investigated. The phylogeographical patterns and genetic diversity of the cytochrome b gene (1110 bp) were addressed on 111 jerboas from 41 localities. We found that the variation in Africa is partitioned into two divergent mitochondrial clades (10.5% divergence relating to 1.65–4.92 Mya) that corresponds to the two cryptic species: J. jaculus and J. deserti. Diversifications within those cryptic species/clades were dated to 0.23–1.13 Mya, suggesting that the Middle Pleistocene climatic change and its environmental consequences affected the evolutionary history of African jerboas. The third distant clade detected, found in the Middle East region, most likely represents a distinct evolutionary unit, independent of the two African lineages. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, ??, ??–??.     

Biomechanics of the masticatory apparatus of Pteropus giganteus (Megachiroptera)

Jaw mechanics in Pteropus were studied by means of a three-dimensional model. The model included several parameters of muscle architecture, combined with quantified movement and electromyographical data. Estimates of the nature of the applied forces that act upon the mandible during a chewing cycle, and subsequent estimates of reaction forces at the bite point and joints during the powerstroke, were thus obtained for different food consistencies. The resultant muscle force (relative to the palate) shifts from upward and slightly backward at large gapes to upward and markedly backward at the end of closing. The resultant simultaneously moves anteriorly. During the powerstroke it retains a constant position and orientation along the thickened anterior edge of the coronoid process. The early stages of opening are guided by the slope of the teeth and mandibular fossa; during the remaining part of opening the working line of the resultant crosses the skull behind the joint and thus acquires an opening moment. The bite force has downward and forward components, and a slight transverse component. For a given applied muscular force its magnitude is larger in more posteriorly positioned bite points. Both joints are loaded, the contralateral one more than the ipsilateral. Food consistency affects magnitude and orientation of the applied force, and hence, magnitude and orientation of the bite force and magnitude of the joint reaction forces. The magnitude of masseter activity relative to temporalis activity appears to be the key factor for the orientation of the bite force, and hence for the mechanical optimal position of the food. The adaptive value of the general topography of the masticatory muscles in Pteropus is discussed.     

狐蝠对森林生态系统的作用

翼手目 (Chiroptera)为真正能飞翔的哺乳动物 ,现存 19科 110 7种 ,分别属于小蝙蝠亚目 (Microchiroptera)和大蝙蝠亚目 (Megachiroptera) ;其中大蝙蝠又称旧大陆狐蝠或果蝠 (flyingfox) ,分布在热带和亚热带地区 ,仅狐蝠科 188种 ,我国自然分布有 9种。部分地区因栖息地丧失和过度捕杀导致狐蝠种群数量全球性或地区性下降或灭绝 ;狐蝠通过传播种子或传粉 ,促进森林生态系统的更新和基因交流。因此 ,狐蝠对森林生态系统的稳定、扩散、生物多样性以及衰退森林的恢复有重要作用     

Phylogeography of the widespread African puff adder (Bitis arietans) reveals multiple Pleistocene refugia in southern Africa

Evidence from numerous Pan‐African savannah mammals indicates that open‐habitat refugia existed in Africa during the Pleistocene, isolated by expanding tropical forests during warm and humid interglacial periods. However, comparative data from other taxonomic groups are currently lacking. We present a phylogeographic investigation of the African puff adder (Bitis arietans), a snake that occurs in open‐habitat formations throughout sub‐Saharan Africa. Multiple parapatric mitochondrial clades occur across the current distribution of B. arietans, including a widespread southern African clade that is subdivided into four separate clades. We investigated the historical processes responsible for generating these phylogeographic patterns in southern Africa using species distribution modelling and genetic approaches. Our results show that interior regions of South Africa became largely inhospitable for B. arietans during glacial maxima, whereas coastal and more northerly areas remained habitable. This corresponds well with the locations of refugia inferred from mitochondrial data using a continuous phylogeographic diffusion model. Analysis of data from five anonymous nuclear loci revealed broadly similar patterns to mtDNA. Secondary admixture was detected between previously isolated refugial populations. In some cases, this is limited to individuals occurring near mitochondrial clade contact zones, but in other cases, more extensive admixture is evident. Overall, our study reveals a complex history of refugial isolation and secondary expansion for puff adders and a mosaic of isolated refugia in southern Africa. We also identify key differences between the processes that drove isolation in B. arietans and those hypothesized for sympatric savannah mammals.     

Phylogeography of Mus (Nannomys) minutoides (Rodentia,Muridae) in West Central African savannahs: singular vicariance in neighbouring populations

We studied the phylogeography of the strict savannah pygmy mice Mus (Nannomys) minutoides in West Central Africa. A total of 846 base pairs of the cytochrome b sequence were obtained for 66 individuals collected in Gabon, Cameroon, Republic of Congo and Central African Republic. These sequences were compared to those of M. minutoides from other African countries and to eight other species of the genus Mus. We performed maximum likelihood, Bayesian and nested clade analyses, as well as neutrality tests and time estimates. We show that M. minutoides is a well‐differentiated monophyletic species that separated from other pygmy mice 1.17 Myr ago. A distinct West Central African M. minutoides clade diverged early from the other African populations of the species, with a more recent common ancestor dating 0.14 Myr. West Central African populations are globally homogeneous, despite the present fragmentation of savannahs by the rain forest. However, our analyses show an unexpected vicariance between geographically close savannahs, embedded in the rain forest in Central Gabon. One of these populations is genetically more similar to very distant peripheral populations than to three closely neighbouring populations situated on both sides of the Ogooué River. A non‐river geographical barrier probably persisted in this area, durably isolating these local populations. This hypothesis about the history of the savannah landscape should be testable through the biogeographical analysis of other strict savannah small mammal species.     

鄂报春(Primula obconica Hance)亲缘地理学的初步研究

为了获得鄂报春（Primula obconica Hance）的种内亲缘地理学信息,对叶绿体基因组上非编码区trnL-trnF的序列变异进行了分析.获得的20个单倍型具有一定的地理分布结构.对这些单倍型进行系统发育分析,得到了三个主要分支：东部分支广泛分布于中国东南部、湖南、湖北、四川和云南;四川分支分布于四川西部;云南分支分布于云南西北部.东部分支分布面积较后两个分支大,并且在东部分支中可以发现一定的演化关系.结合古气候学和地质学信息,推测东部分支中现存的单倍型由冰期时气候变冷导致鄂报春快速迁移而形成,云南、四川分支中的单倍型可能是在各自的避难所中得以保存.同时本文也简要地探讨了鄂报春几个亚种之间的分类学关系.     

Neonatal Vocalizations of Ten Species of Malaysian Bats (Megachiroptera and Microchiroptera)

As infants, bats emit non-sonar calls that are species typical.Five different species of Hipposideros have contrasting neonatalcalls. The calling rates increase and then wane with age inthe same general pattern as seen in rodents. Infant bat callsshow greater frequency sweep and higher repetition rates thanthose of rodents. In contrast to microchiropterans, infantsof a megachiropteran, Eonycteris, emit calls with a lower repetitionrate; the calls show no increase in frequency with age.     

Phylogeography and conservation genetics of a giant lobelia (Lobelia giberroa) in Ethiopian and Tropical East African mountains

Lobelia giberroa is a giant rosette plant growing in the afro-montane belt of the afro-alpine environment, a unique and little-studied ecosystem occupying the high mountains of eastern Africa. We analysed amplified fragment length polymorphisms (AFLPs) from 11 mountain systems in Ethiopia and Tropical East Africa to infer the phylogeographical history of the species. A total of 191 individuals were investigated from 25 populations. Principal coordinate analysis and population structure analyses revealed three major phylogeographical groups: the Ethiopian mountains and one group on each side of the Rift Valley in Tropical East Africa, respectively: Elgon-Cherangani and Kenya-Aberdare-Kilimanjaro-Meru. Analysis of Molecular Variance showed 55.7% variance among the three groups, suggesting an old divergence. Together with a clear geographical substructure within the main groups, this pattern indicates gradual expansion and supports the montane forest bridge hypothesis, stating that the area occupied by forest was larger and more continuous in previous interglacials and earlier in the present interglacial. Genetic diversity was lower in Ethiopia than in the other two main groups, possibly due to an ancient founder effect when Ethiopia was colonized from the south.     

Phylogeography of Cape Verde Island skinks (Mabuya)

The Cape Verde Islands are of volcanic origin with most having appeared between the early Miocene and mid-Pleistocene. They contain six known species of Mabuya skinks. Phylogeographical relationships within and among the relatively widespread taxa M. stangeri, M. spinalis and M. delalandii were inferred, based on approximately 1 kbp of the cytochrome b gene (mitochondrial DNA). Reciprocal monophyly of M. spinalis and M. stangeri was established, which may have arisen from an early Pliocene/late Miocene cladogenetic event. Considerable between-island sequence divergence was detected among M. spinalis, which appears to have colonized the older islands (Sal and Boavista) first. Much lower sequence divergence was found in M. delalandii, indicating a more recent range expansion. Here, evidence points to colonization of the younger islands of Brava and Fogo soon after appearance. There are similarities between some of the described patterns and those seen in lizards from the Canary Islands.     

Phylogeography of the rock partridge (Alectoris graeca)

We used mitochondrial DNA control-region and microsatellite data to infer the evolutionary history and past demographic changes in 332 rock partridges (Alectoris graeca) sampled from throughout the species' distribution range, with the exception of the central Balkans region. Maternal and biparental DNA markers indicated concordantly that rock partridge populations are structured geographically (mtDNA phiST = 0.86, microsatellite FST = 0.35; RST = 0.31; P < 0.001). Phylogenetic analyses of 22 mtDNA haplotypes identified two major phylogroups (supported by bootstrap values = 93%), splitting partridges from Sicily vs. all the other sampled populations at an average Tamura-Nei genetic distance of 0.035, which corresponds to 65% of the average distance between closely related species of Alectoris. Coalescent estimates of divergence times suggested that rock partridges in Sicily were isolated for more than 200000 years. This deep subdivision was confirmed by multivariate, Bayesian clustering and population assignment analyses of microsatellite genotypes, which supported also a subdivision of partridges from the Alps vs. populations in the Apennines, Albania and Greece. Partridges in the Apennines and Albania-Greece were probably connected by gene flow since recently through a late Pleistocene Adriatic landbridge. Deglaciated Alps were probably colonized by distinct and, perhaps, not yet sampled source populations. Bottleneck and mismatch analyses indicate that rock partridges have lost variability through past population declines, and did not expand recently. Deglaciated areas could have been recolonized without any strong demographic expansion. Genetic data partially supported subspecies subdivisions, and allowed delimiting distinct conservation units. Rock partridges in Sicily, formally recognized as A. g. whitakeri, met the criteria for a distinct evolutionary significant unit.     

Phylogeography of Iberian Discoglossus (Anura: Discoglossidae)

The genus Discoglossus (Anura, Discoglossidae) comprises five morphologically similar species. Molecular analyses have found high values of genetic differentiation among these cryptic taxa and confirmed the existence of two Iberian endemic lineages ( Discoglossus galganoi and D. jeanneae ) and a distinct lineage of uncertain origin representing a third species in NE Spain. In order to analyse the pattern of geographical distribution of haplotype diversity within Iberian Discoglossus and test the hypothesis of an Algerian origin for populations in NE Spain sequence data has been resolved from 35 populations of D. galganoi and D. jeanneae on the Iberian Peninsula and samples from NE Spain and north Africa. I analysed 959 bp corresponding to partial sequences of cytochrome b and nad 4 and found extremely low values of sequence divergence among populations of D. jeanneae . Three clades can be recognized within D. galganoi , however, and a statistically significant association with geography can be explained as a result of past fragmentation. Sequence data strongly support an Algerian origin for populations of Discoglossus from NE Spain. Finally, the taxonomic status of Discoglossus in Morocco is discussed and its elevation to species status as Discoglossus scovazzi Camerano, 1878 is suggested.