Structure and functioning of the microbial loop in a boreal reservoir

The abundance and biomass of the main components of the microbial plankton food web (“microbial loop”)—heterotrophic bacteria, phototrophic picoplankton and nanoplankton, heterotrophic nanoflagellates, ciliates and viruses, production of phytoplankton and bacterioplankton, bacterivory of nanoflagellates, bacterial lysis by viruses, and the species composition of protists—have been determined in summer time in the Sheksna Reservoir (the Upper Volga basin). A total of 34 species of heterotrophic nanoflagellates from 15 taxa and 15 species of ciliates from 4 classes are identified. In different parts of the reservoir, the biomass of the microbial community varies from 26.2 to 64.3% (on average 45.5%) of the total plankton biomass. Heterotrophic bacteria are the main component of the microbial community, averaging 63.9% of the total microbial biomass. They are the second (after the phytoplankton) component of the plankton and contribute on average 28.6% to the plankton biomass. The high ratio of the production of heterotrophic bacteria to the production of phytoplankton indicates the important role of bacteria, which transfer carbon of allochthonous dissolved organic substances to a food web of the reservoir.     

Abundance,biomass, and production of heterotrophic bacteria in a large plain reservoir during the ice-covered period

The abundance, biomass, production, and size and morphological structure of heterotrophic bacteria have been determined and their contribution to the total plankton biomass has been assessed in the Rybinsk Reservoir (the Upper Volga) during the ice-covered period. Structural and functional characteristics of bacteria, except for their cell sizes in winter, are lower than those in the growing season. However, heterotrophic bacteria have made the main contribution (89.3%) to the total biomass of plankton community in winter. During the growing season, phytoplankton is a major component of plankton (48.8%), while the bacteria average 36.5%. The total plankton biomass under the ice averages 148 mg C/m³, which is 2.6 times lower than in the period of open water. During the ice-covered period, the number of protists is small and they consume an insignificant part of the bacterial production; viral lysis is the main reason for bacterial mortality.     

Biomass,composition and activity of organism assemblages along a salinity gradient in sea ice subjected to river discharge in the Baltic Sea

A study was undertaken to examine the activity and composition of the seasonal Baltic Sea land-fast sea-ice biota along a salinity gradient in March 2003 in a coastal location in the SW coast of Finland. Using a multi-variable data set, the less well-known algal and protozoan communities, and algal and bacterial production in relation to the physical and chemical environment were investigated. Also, the first coincident measurements of bacterial production and dissolved organic matter (DOM) in a sea-ice system are reported. Communities in sea ice were clearly autotrophy-dominated with algal biomass representing 79% of the total biomass. Protozoa and rotifers made up 18% of biomass in the ice and bacteria only 3%. Highest biomasses were found in mid-transect bottom ice. Water column assemblages were clearly more heterotrophic: 39% algae, 12% bacteria and 49% for rotifers and protozoa. Few significant correlations existed between DOM and bacterial variables, reflecting the complex origin of ice DOM. Dynamics of dissolved organic carbon, nitrogen and phosphorus (DOC, DON and DOP) were also uncoupled. A functional microbial loop is likely to be present in the studied ice. Existence of an under-ice freshwater plume affects the ecosystem functioning: Under-ice water communities are influenced directly by river-water mixing, whereas the ice system seems to be more independent—the interaction mainly taking place through the formation of active bottom communities.     

Competition between Picoplanktonic Cyanobacteria and Heterotrophic Bacteria along Crossed Gradients of Glucose and Phosphate

A laboratory experiment was performed to test whether differences in nutrient and energy demands between picophytoplankton and heterotrophic bacteria can explain the apparent inverse biomass relationship between these organisms in lakes along gradients of organic carbon and nutrients. Growth rates and final yield of cells were analyzed in crossed gradients of glucose and phosphate. Concentrations of phosphate (10, 25, and 60 microg P L(-1)) and glucose (0, 0.3, and 3 mg C L(-1)) were used in all possible combinations giving 9 different treatments. Heterotrophic bacteria had higher maximum growth rates in all treatments and became larger than picophytoplankton in many treatments. The variance in abundance of heterotrophic bacteria between treatments could almost completely be explained by the combined effects of glucose and P. In treatments where carbon limitation slowed down the growth of heterotrophic bacteria, picophytoplankton became abundant and these organisms showed a positive response to P in combination with a negative response to glucose. The negative effect of glucose on picophytoplankton is suggested to be indirect and caused by competition with bacteria that are favored by organic C. The results suggest that competition for phosphate between phytoplankton and bacteria is not size-dependent, that heterotrophic bacteria are superior competitors for P, and that organic C produced by picophytoplankton was of minor importance for heterotrophic bacteria.     

宁夏典型温性天然草地固碳特征

本文研究了宁夏草甸草原、温性草原、草原化荒漠和荒漠草原4种温性典型天然草地生态系统碳储量及其构成特征。结果表明: 草甸草原、温性草原、草原化荒漠和荒漠草原植被总生物量分别为1178.91、481.22、292.80和209.09 g·m^-2。其中,地下根系生物量是构成草甸草原和温性草原植被总生物量的主体,分别占总生物量的73.1%和56.6%;地上植被生物量是构成草原化荒漠和荒漠草原植被总生物量的主体,分别占总生物量的50.3%和47.6%;枯落物生物量占比较低,分别仅为8.5%、8.0%、6.4%和16.2%。草甸草原、温性草原、草原化荒漠和荒漠草原4种天然草地生态系统碳储量分别为13.90、5.94、2.69和2.37 kg·m^-2,其中植被碳储量分别为470.26、192.23、117.17、83.36 g·m^-2,0～40 cm土层土壤有机碳储量分别为13.43、5.75、2.58和2.29 kg·m^-2,土壤有机碳储量是构成宁夏典型天然草地碳储量的主体,分别占到了生态系统碳储量的96.6%、96.8%、95.6%和96.5%。4种草地类型植被总生物量、植被碳储量、土壤有机碳储量和生态系统碳储量均表现为:草甸草原＞温性草原＞草原化荒漠＞荒漠草原。     

Activity and growth efficiency of heterotrophic bacteria in Rybinsk Reservoir

The active fraction, production, and respiration of heterotrophic bacteria are determined to assess their growth efficiency and their role in the carbon cycle in the pelagic zone of Rybinsk Reservoir in summer. The greater part of organic substances assimilated by bacteria is mineralized to CO₂. It has been established that the essential part of the constructive and energy metabolism of bacteria is supported by the input of allochthonous substances. Bacterioplankton, producing the biomass at their expense, performs functions similar to the functions of phytoplankton, and substantially supports the structural and functional organization of the planktonic food web in the reservoir.     

The Microbial Food Web and its Sensitivity to Eutrophication and Contaminant Enrichment: A Cross-system Overview

The relative contribution to the pelagic carbon flux of bacteria, autotrophic picoplankton (APP), and heterotrophic nano- and microplankton is highest in pristine oligotrophic waters. Increased nutrient loading stimulates picoplankton production but reduces the importance of the microbial food web. Not all microorganisms are affected in the same way by eutrophication and contaminant enrichment. In contrast to bacteria and heterotrophic nanoflagellates, the APP was found to be highly sensitive to heavy metal contamination. The changing significance of the microbial loop has far-reaching consequences for the entire ecosystem including alterations occurring in the benthos. The structure and functioning of the microbial food web is similar in marine, brackish, and freshwater ecosystems.     

Effects of Additions of DOC on Pelagic Biota in a Clearwater System: Results from a Whole Lake Experiment in Northern Sweden

An oligotrophic clearwater lake, initially characterized by a pronounced dominance of autotrophic phytoplankton and mostly by one species, the green alga Botryococcus, was subject to additions of dissolved organic carbon in the form of white sugar (sucrose) during two consecutive years. The hypothesis tested was that it is organic carbon per se, and not other possible effects of humic substances, that determines the differences in structure of the planktonic ecosystem between humic and clearwater lakes. The additions of DOC resulted in a significant increase in bacterial biomass and a decrease in the biomass of autotrophic phytoplankton. The biomass of mixotrophic and heterotrophic flagellates instead increased significantly, whereas no effects were found to propagate to higher trophic levels. As a result of the changes among biota, total planktonic biomass also decreased to a level typical of nearby humic lakes. We suggest that it is the carbon component of humic material and its utilization by bacterioplankton that determines the structure and function of the pelagic food web in humic lakes.     

Local factors control the community composition of cyanobacteria in lakes while heterotrophic bacteria follow a neutral model

1. Neutral community models are derived from the proposition that basic probabilities of species loss (extinction, emigration) and gain (immigration, speciation) explain biological community structure, such that species with many individuals are very likely to be widespread. Niche models on the other hand assume that interactions between species and differential resource use mediate species coexistence, thus invoking environmental factors to explain community patterns. 2. In this study, we compared neutral and niche models to test how much of the spatial variability of assemblages of heterotrophic bacteria and phytoplankton in 13 lakes they could explain. Analysis of phytoplankton was restricted to cyanobacteria, so that they could be studied with the same molecular fingerprinting method, automated ribosomal intergenic spaces analysis (ARISA), as heterotrophic bacteria. We determined local biotic and abiotic lake variables as well as lake age, glacial history and distance between sites. 3. The neutral community model had a good fit to the community composition of heterotrophic bacteria (R² = 0.69), whereas it could not produce a significant model for the community composition of cyanobacteria. 4. The community composition of cyanobacteria was instead correlated to environmental variables. The best model, a combination of total organic carbon, biomass of eukaryotic phytoplankton, pH and conductivity, could explain 8% of the variation. In contrast, variation in the community composition of heterotrophic bacteria was not predicted by any of the environmental variables. Historical and spatial variables were not correlated to the community composition of either group. 5. The pattern found for heterotrophic bacteria suggests that stochastic processes are important. The correlation of cyanobacteria with local environmental variables alone is consistent with the niche model. We suggest that cyanobacteria, a group of organisms containing bloom‐forming species, may be less likely to fit a neutral community model, since these blooms are usually triggered by a particular combination of environmental conditions.     

Effects of organism size and community composition on ecosystem functioning

We tested (1) if the size of dominant species influenced ecosystem functioning in food webs consisting of bacteria, algae, and protozoa; (2) whether those effects changed in importance through time; and (3) how those effects compared with differences in diversity among experimental food webs. We constructed food webs using two size fractions of organisms that differed in individual mass by approximately two orders of magnitude. We measured total biomass and respiration (total CO₂ production) as two aspects of ecosystem functioning. We also compared these size‐dependent patterns in functioning across two levels of species richness. Initially, organism size strongly influenced total community biomass. With time, however, biomass and respiration eventually converged in communities dominated by large or small species. We conclude that after sufficient time for community development any differences in ecosystem functioning resulted from differences in community composition, including species richness, but not the size of the dominant organisms.     

Dark Carbon Fixation: An Important Process in Lake Sediments

Close to redox boundaries, dark carbon fixation by chemoautotrophic bacteria may be a large contributor to overall carbon fixation. Still, little is known about the relative importance of this process in lake systems, in spite the potentially high chemoautotrophic potential of lake sediments. We compared rates of dark carbon fixation, bacterial production and oxygen consumption in sediments from four Swedish boreal and seven tropical Brazilian lakes. Rates were highly variable and dark carbon fixation amounted up to 80% of the total heterotrophic bacterial production. The results indicate that non-photosynthetic carbon fixation can represent a substantial contribution to bacterial biomass production, especially in sediments with low organic matter content.     

Carbon allocation between tree root growth and root respiration in boreal pine forest

Soil respiration, i.e. respiration by mycorrhizal roots and by heterotrophic organisms decomposing above- and below-ground litters, is a major component in ecosystem carbon (C) balances. For decades, the paradigm has been that the biomass of fine roots of trees turns over several times a year, which together with large inputs of above-ground litter leaves little room for the contribution from root respiration. Here, we combine the results of a recent tree girdling experiment with the C budget of the classic Swedish Coniferous Forest (SWECON) project, in which root growth and turnover were estimated to be high. We observe that such a high rate of root turnover requires an unlikely high C use efficiency for root growth, and is not consistent with the 1:1 relation between root: heterotrophic respiration obtained in the girdling experiment. Our analysis suggests that 75% of the C allocated to roots is respired, while 25% is used for growth, and hence that root growth and turnover were grossly overestimated in the SWECON study.     

Change of Microbial Populations in a Suspended-sludge Reactor Performing Completely Autotrophic N-removal

Summary In recent years, several novel processes for N-removal almost without consumption of organic carbon under oxygen-limited conditions have been discovered, which may be a promising option for low-cost N-removal from ammonia-rich wastewater. In this study, a laboratory scale suspended-sludge reactor was continuously operated under low dissolved oxygen concentration. High N-removal efficiency and subsequently degradation of the reactor were observed. Molecular analysis based on a partial-16S rRNA gene library showed that, at the stage of high efficiency, the biomass was composed of Planctomycete-like bacteria (up to 40%) and heterotrophic organisms (approximately 60%) as well as a few ammonia-oxidizing bacteria and at the stage of degradation, the autotrophic ammonia-oxidizing bacteria were dominant (up to 70%) and Planctomycete-like bacteria were no longer found in the sludge. Three specific Planctomycete-16S rRNA-targeted probes were used for fluorescence in situ hybridization (FISH). The results showed that at the high-efficiency stage, Planctomycete-like bacteria, present at approximately 20% of the total bacteria, lay frequently in the middle of flocs, while the heterotrophic bacteria occurred within the outer layers. This work revealed that the change of the microbial populations is the key reason for reactor deterioration, and the heterotrophic bacteria probably play an important role in sustaining the biomass structure of the sludge.     

Bacterial consumption of total and dissolved organic carbon in the Great Barrier Reef

Heterotrophic bacteria typically take up directly dissolved organic matter due to the small molecular size, although both particulate and dissolved organic matter have labile (easily consumed) compounds. Tropical coastal waters are important ecosystems because of their high productivity. However, few studies have determined bacterial cycling (i.e. carbon uptake by bacteria and allocation for bacterial biomass and respiration) of dissolved organic carbon in coastal tropical waters, and none has determined bacterial cycling of total and dissolved organic carbon simultaneously. In this study we followed bacterial biomass and production, and organic carbon changes over short-term (12 days) dark incubations with (total organic carbon, TOC) and without particulate organic carbon additions (dissolved organic carbon, DOC). The study was performed at three sites along the middle stretch of the Great Barrier Reef (GBR) during the dry and wet seasons. Our results show that the bacterial growth efficiency is low (0.1–11.5%) compared to other coastal tropical systems, and there were no differences in the carbon cycling between organic matter sources, seasons or locations. Nonetheless, more carbon was consumed in the TOC compared to the DOC incubations, although the proportion allocated to biomass and respiration was similar. This suggests that having more bioavailable substrate in the particulate form did not benefit bacteria. Overall, our study indicates that when comparing the obtained respiration rates with previously measured primary production rates, the GBR is a heterotrophic system. More detailed studies are required to fully explore the mechanisms used by bacteria to cycle TOC and DOC in tropical coastal waters.

     

Mineralization in the Ems-Dollard estuary effects on carbon and oxygen budgets

Summary The Ems estuary is a tidal system, showing typical estuaries characteristics, such as gradients of salinity and suspended matter in the water phase. The tidal amplitude is 2.5–3 m. Tidal flats cover 40% of the total area in the outer part and 75% in the innermost part of the estuary, the Dollard. In the sediment aerobic heterotrophic bacteria are concentrated in the upper 2 cm, the numbers rapidly decreasing with depth.Oxygen production and consumption rates in the sediment, and oxygen consumption in the water are measured, together with environmental parameters and numbers of aerobic heterotrophic bacteria. Using a conversion factor of 12/32, oxygen measurements are translated to organic carbon. Input of organic carbon from external sources (particulate carbon from the river Ems and the North Sea, and organic waste discharge) is calculated for the Dollard. An organic carbon budget for the Dollard, using these calculated figures from one year's measurements, showed that most of the organic carbon entering the systems, originated from external sources.Mineralization was quantitatively more important in the sediment than it was in the water phase. The calculated import and production of organic carbon in the system was larger than the calculated consumption. An explanation for this difference is probably the export of soluble organic carbon, which was not measured, to the adjoining Waddensea, which must be considerable. It was concluded that heterotrophic bacteria must play an important role in carbon fluxes in the Dollard and that studies of growth yield under in situ conditions are necessary for a better understanding of their role in the ecosystem.     

Inverse carbon isotope patterns of lipids and kerogen record heterogeneous primary biomass

Throughout the Proterozoic δ(13)C values for preserved n-alkyl lipids are more positive than for syngenetic kerogen. This pattern is the inverse of biosynthetic expectations. It has been suggested that this isotopic inversion results from selective preservation of lipids from (13)C-enriched heterotrophic populations, while the bulk of kerogen derives from primary producers. Here, we formulate a degradation model to calculate the (13)C content of sedimentary total organic carbon and lipid. The model addresses two scenarios. The first scenario explores preferential preservation of heterotrophic lipid, thereby quantifying the existing hypothesis. In the second, we suggest that an inverse signature could be the result of prokaryotic phytoplankton contributing the majority of the total ecosystem biomass. Photosynthetic prokaryotes bearing a relative (13)C enrichment would contribute much of the resulting preserved lipids, while primary eukaryotic biomass would dominate the total organic carbon. We find that our hypothesis of a mixed primary producer community generates inverse isotopic patterns while placing far fewer requirements on specific degradation conditions. It also provides a possible explanation as to why there are large variations in the (13)C content of the isoprenoid lipids pristane and phytane relative to n-alkyl lipid, while the difference between n-alkyl lipid and kerogen is more constant. Our results suggest that the disappearance of the inverse (13)C signature in the late Ediacaran is a natural consequence of the fundamental shift to oceans in which export production has a higher ratio of eukaryotic biomass.     

Bacterial Activity in a Reservoir Determined by Autoradiography and its Relationships to Phyto- and Zooplankton

In the drinking water reservoir Římov (Southern Bohemia) bacterioplankton was studied during 1983. Special attention was given to the relationships between parameters of bacterial abundance, total and individual activity. Bacterial counts and biomass was assessed and autoradiographic determinations of the proportion of active bacteria incorporating thymidine (Th) and mixture of amino acids (AA) and total uptake rate of AA were made over a year in the surface layer and during summer stratification from the thermocline and 15 m depth. Specific activity of metabolically active bacteria (SAMAB) and specific activity per unit of biomass (SAUB) were negatively correlated with counts of metabolizing cells and with bacterial biomass, respectively. Total and individual heterotrophic activity and counts of bacteria coincided with the changes of phytoplankton biomass, whereas bacteria incorporating Th were more tightly correlated with primary production. The most significant relation of metabolically active bacteria was found to cladoceran biomass. Thus, this part of heterotrophic bacterial activity seems to be stimulated by leakage of dissolved organic matter from phytoplankton being disrupted and incompletely digested by cladocerans rather than from healthy photosynthetizing cells.     

Trophic and non‐trophic interactions influence the mechanisms underlying biodiversity–ecosystem functioning relationships under different abiotic conditions

Plant diversity effects on ecosystem functioning usually have been studied from a plant perspective. However, the mechanisms underlying biodiversity–ecosystem functioning relationships may also depend on positive or negative interactions between plants and other biotic and abiotic factors, which remain poorly understood. Here we assessed whether plant–herbivore and/or plant–detritivore interactions modify the biodiversity–ecosystem functioning relationship and the mechanisms underlying biodiversity effects, including complementarity and selection effects, biomass allocation, vertical distribution of roots, and plant survival using a microcosm experiment. We also evaluated to what extent trophic and non‐trophic interactions are affected by abiotic conditions by studying drought effects. Our results show that biotic and abiotic conditions influence the shape of the biodiversity–ecosystem function relationship, varying from hump‐shaped to linear. For instance, total biomass increased linearly with plant richness in the presence of detritivores, but not in the absence of detritivores. Moreover, detritivore effects on belowground plant productivity were highly context dependent, varying in the presence of herbivores. Plant interactions with soil biota, especially with herbivores, influenced the mechanisms underlying diversity effects. Herbivores increased plant complementarity and modified biomass allocation and vertical distribution of roots. Furthermore, biotic–abiotic interactions influenced plant productivity differently across plant functional groups. Our findings emphasize the importance of complex biotic interactions underlying biodiversity effects, and that these biotic interactions may change with abiotic conditions. Despite minor changes in productivity in the short‐term, soil biota‐induced changes in plant–plant interactions and plant survival are likely to have significant long‐term consequences for ecosystem functioning. Considering the context‐dependency of multichannel interactions may contribute to reconciling differences among observed patterns in biodiversity studies. Further, abiotic conditions modified the effects of biotic interactions, suggesting that changes in environmental conditions may not only affect ecosystems directly, but also change the biotic composition of and dynamics within ecosystems.     

树种多样性对土壤微生物群落结构和元素生物地球化学循环的影响研究进展

森林是陆地生态系统的重要组成部分,其巨大的生产力和生态服务功能对人类的生存和发展至关重要。森林树种多样性增加能够显著提高森林生产力,关于树种多样性如何影响地下生物多样性及生态功能逐渐受到国内外学者的广泛关注。从土壤微生物及其介导的元素生物地球化学循环这一视角出发,综述了树种多样性对土壤细菌和真菌多样性、群落结构及功能的影响,提出需要进一步深入研究的方向。总体来说,树种多样性有利于增加土壤细菌生物量和多样性,是预测病原性真菌和菌根真菌多样性及群落结构的重要生物因子。树种多样性能增加土壤有机碳储量,增强森林土壤的甲烷氧化能力,并提高土壤磷周转速率及有效磷含量。关于树种多样性对森林土壤氮循环的影响需考虑多样性假说和质量比假说的相对贡献。今后应加强树种多样性对多个营养级之间相互作用的研究;关注树种多样性对生态系统多功能的影响;加强学科交叉,引入微生物种群动态模型和气候模型等模型预测方法,研究树种多样性对全球气候变化的应对机制,以期促进地上植物多样性与地下生态系统功能关系的研究,增强森林生态系统应对未来全球环境变化的能力。