The northernmost sauropod record in the Northern Hemisphere

Isolated sauropod teeth from the Early Cretaceous Teete locality in Yakutia (Eastern Siberia, Russia) are the only evidence that sauropods lived in high latitudes (palaeolatitude estimate of N 62°) in the Northern Hemisphere. The spatulate broad tooth crowns of adult individuals lack marginal denticles while these are present in a juvenile tooth. The teeth have overlapping facets and likely belong to a basal macronarian. The juvenile tooth indicates that sauropods reproduced in high latitudes and possibly stayed there around the year. The Teete vertebrate assemblage comprises both endothermic, or presumably endothermic tetrapods (theropod dinosaurs, tritylodontids and mammals), and ectothermic tetrapods (salamanders, turtles, choristoderes and lizards), but no crocodyliforms. This suggests a temperate climate, with an annual mean temperature well above freezing level but below 14°C.     

A classification of the deciduous forest of eastern North America

Data from 300 forest stands, scattered over 29 states within the eastern North American deciduous forest, were subjected to detrended correspondence analysis (DCA) and two-way indicator species analysis (TWINSPAN) in an effort to identify classifiable units. Most species are widespread which provide a great deal of continuity in the vegetation.The deciduous forest can be divided into three forest regions: (1) northern, (2) central and (3) southern. The northern region corresponds to the hemlock-white pine-northern hardwood forest of Braun (1950). The central region includes the beech-maple and oak-hickory forests. The beech-maple as identified here includes the mixed mesophytic, beech-maple, maple-basswood and about half of the western mesophytic forests of Braun (1950). The oak-hickory includes Braun's oak-hickory, oak-chestnut and about half of the western mesophytic forests. The southern region coincides with the southern mixed hardwood forests.     

Three groups of interneurons account for nearly 100% of neocortical GABAergic neurons

An understanding of the diversity of cortical GABAergic interneurons is critical to understand the function of the cerebral cortex. Recent data suggest that neurons expressing three markers, the Ca2+-binding protein parvalbumin (PV), the neuropeptide somatostatin (SST), and the ionotropic serotonin receptor 5HT3a (5HT3aR) account for nearly 100% of neocortical interneurons. Interneurons expressing each of these markers have a different embryological origin. Each group includes several types of interneurons that differ in morphological and electrophysiological properties and likely have different functions in the cortical circuit. The PV group accounts for ～40% of GABAergic neurons and includes fast spiking basket cells and chandelier cells. The SST group, which represents ～30% of GABAergic neurons, includes the Martinotti cells and a set of neurons that specifically target layerIV. The 5HT3aR group, which also accounts for ～30% of the total interneuronal population, is heterogeneous and includes all of the neurons that express the neuropeptide VIP, as well as an equally numerous subgroup of neurons that do not express VIP and includes neurogliaform cells. The universal modulation of these neurons by serotonin and acetylcholine via ionotropic receptors suggests that they might be involved in shaping cortical circuits during specific brain states and behavioral contexts.     

Phylogenetic reconstruction of weevil superfamily Curculionoidea (coleoptera) using the SYNAP method

Phylogenetic relationships within the superfamily Curculionoidea were reconstructed. Autapomorphies of the superfamily Curculionoidea include more or less pronounced snout, clubbed antennae, and partially sclerotized or completely membranous male tergite 9. Weevil families can be divided into three groups. The first group includes the most primitive family Nemonychidae. The second group includes nine families (Anthribidae, Belidae, Oxycorynidae, Eccoptarthridae, Allocorynidae, Rhynchitidae, Attelabidae, Ithyceridae, and Brentidae). The third (“higher”) group includes six families (Brachyceridae, Cryptolaryngidae, Dryophthoridae, Curculionidae, Scolytidae, and Platypodidae).     

Formulation of the CBC-Model for Modelling the Contaminants and Footprints in Natural Attenuation of BTEX

This paper provides the details of the Coupled Biological and Chemical (CBC) model for representing in situ bioremediation of BTEX. The CBC model contains novel features that allow it to comprehensively track the footprints of BTEX bioremediation, even when the fate of those footprints is confounded by abiotic reactions and complex interactions among different kinds of microorganisms. To achieve this comprehensive tracking of all the footprints, the CBC model contains important new biological features and key abiotic reactions. The biological module of the CBC-model includes these important new aspects: (1) it separates BTEX fermentation from methanogenesis, (2) it explicitly includes biomass as a sink for electrons and carbon, (3) it has different growth rates for each biomass type, and (4) it includes inhibition of the different reactions by other electron acceptors and by sulfide toxicants. The chemical module of the CBC-model includes abiotic reactions that affect the footprints of the biological reactions. In particular, the chemical module describes the precipitation/dissolution of CaCO3, Fe2O3, FeS, FeS2, and S degrees. The kinetics for the precipitation/dissolution reactions follow the critical review in Maurer & Rittmann (2004).     

中国爬行纲动物分类厘定

本文对中国爬行纲动物的分类体系和物种进行了系统的评估, 规范了中文学名, 给出了《中国爬行纲校正名录》, 结果表明: 中国现存爬行纲动物3目30科132属462种, 其中鳄形目(Crocodylia)1科1属1种, 龟鳖目(Testudines)6科18属33种, 有鳞目(Squamata)蜥蜴亚目(Lacertilia)10科41属189种, 有鳞目蛇亚目(Serpentes)13科72属239种。与《中国动物志 爬行纲 第一卷(总论、龟鳖目、鳄形目)》、《中国动物志 爬行纲 第二卷(有鳞目: 蜥蜴亚目)》和《中国蛇类》相比, 目和亚目无变化; 科级水平新增5科, 变更2科; 属级水平新增23属, 合并15属, 变更6属; 种级水平新增81种, 变动2种; 未收录同物异名12种、杂交6种、中国无分布7种。形态和分子系统发育研究结果在爬行动物不同分类阶元均有一定差异, 文章对这些争议进行了讨论, 并对名录的选择做了说明。     

草鱼同工酶发育遗传学研究——Ⅱ.早期发育过程中的同工酶分析

采用淀粉凝胶电泳技术研究了草鱼早期发育过程中(受精后0—200小时)6种同工酶系统(LDH、MDH、GDH、ADH、IDH、EST)的表达谱式。除了ADH以外,其余5种同工酶系统均具有明显的发育变化谱式。根据早期发育过程中同工酶的变化谱式及其组织分布,草鱼的同工酶可分为三大类型:(1)在未受精卵及早期发育过程中一直存在,并常有较广泛的组织分布;(2)未受精卵及早期发育过程中均不存在,一般仅分布于少数几种组织中;(3)未受精卵及胚胎发育早期不存在,直到早期发育过程中某一特定时期才开始出现。     

燕麦种质资源形态学性状的遗传多样性

【目的】燕麦种质资源遗传多样性研究不仅有助于种质资源的收集和评价,而且对燕麦生产和育种具有重要指导意义。【方法】研究对260份燕麦种质资源的20个形态学性状多样性、变异及聚类进行分析,评价其形态学性状的遗传变异水平,明确燕麦种质资源的性状特点与遗传多样性,以期为燕麦种质创新和品种改良提供依据。【结果】260份燕麦种质资源形态学性状间存在广泛的遗传多样性,质量性状的遗传多样性指数以粒色最大(1.53),芒色最小(0.76);12个数量性状呈正态分布,数量性状的遗传多样性指数以千粒重最大(2.03),有效分蘖数最小(1.22),变异系数最大的是有效分蘖数(89.02%),最小的是株高(11.19%)。根据燕麦品种(系)间各性状的遗传差异,聚类分析将供试的260份燕麦种质资源分为6类,其中种质群Ⅰ包括42份材料,可作为种用型育种目标的亲本材料;种质群Ⅱ包括31份材料,可作为选育高产饲草品种的亲本材料;种质群Ⅳ包括41份材料,可作为选育大粒专用型品种的育种材料;种质群Ⅴ包括46份材料,可作为燕麦矮化的亲本材料;而种质群Ⅲ包括46份材料,种质群Ⅵ包括54份材料,这两类种质群材料的综合性状表现不突...     

Resource brief: The National Non-Human Primate DNA Bank

A National Non-Human Primate (NHP) DNA bank has been established by the National Primate Research Centers and the National Center for Research Resources, NIH, providing a new resource for comparative genomic studies. The collection includes genomic DNA samples from macaques, chimpanzees, baboons, vervets, marmosets, sooty mangabeys and titi monkeys. The repository includes DNAs from 697 unrelated animals, suitable for comparing allele representation within and between species. Another 474 DNAs are derived from family-trios (dam, sire, off spring), and are useful for verifying the segregation of genetic variants. The National NHP DNA Bank includes specified holdings within each of the eight National Primate Research Centers, though detailed information on the entire collection is available through a common website.     

Neodiptera: New insights into the adult morphology and higher level phylogeny of Diptera (Insecta)

This paper outlines several aspects of the skeleto-muscular organization of the adult prothorax and cervix pertaining to the ground pattern of Diptera, which in turn leads to the characterization of Neodiptera, a higher level dipterous taxon which includes Brachycera and bibionomorph Nematocera ( sensu Hennig). The monophyly of Neodiptera is firmly supported by four skeleto-muscular modifications of the pronoto-cervical region. The bibionomorph Nematocera are shown to be paraphyletic in terms of Brachycera. On more preliminary evidence it is argued that the fundamental dichotomy of the extant Diptera lies between a 'polyneuran' clade which includes Trichoceridae, Tipuloidea, Tanyderidae, and Ptychopteridae and an 'oligoneuran' clade which includes all the remaining groups. Preliminary evidence for a sister group relationship between Blephariceroidea and Culicomorpha is also provided. The possible adaptational significance of the cervical specializations in Neodiptera is discussed.     

Nucleotide sequence, structural organization, and functional characterization of the small recombinant plasmid pOM1 that is specific for Francisella tularensis

pOM1 is a recombinant 4442-bp plasmid that includes the replicon of the Francisella novicida-like strain F6168 cryptic plasmid pFNL10 and the tetracycline resistance gene (tetC) of plasmid pBR328. pOM1 can stably replicate and is maintained in Francisella tularensis biovars tularensis, palaearctica, and palaearctica var. japonica. The replicon of pOM1 includes the ori region and the repA gene. The ori region, located upstream of the repA gene includes two sets of 31- and 13-bp direct repeats (DR), with AT-rich regions preceding each of the DRs. Two putative promoters of the repA gene were found connected with the DR regions. A 40-kDa protein was encoded by the repA gene and found essential for replication. Expression of the tetC gene is regulated by an Escherichia coli sigma(70)-like promoter and is dependent on the F. tularensis strain and its environment.     

The intronerator: exploring introns and alternative splicing in Caenorhabditis elegans

The Intronerator (http://www.cse.ucsc.edu/ approximately kent/intronerator/ ) is a set of web-based tools for exploring RNA splicing and gene structure in Caenorhabditis elegans. It includes a display of cDNA alignments with the genomic sequence, a catalog of alternatively spliced genes and a database of introns. The cDNA alignments include >100 000 ESTs and almost 1000 full-length cDNAs. ESTs from embryos and mixed stage animals as well as full-length cDNAs can be compared in the alignment display with each other and with predicted genes. The alt-splicing catalog includes 844 open reading frames for which there is evidence of alternative splicing of pre-mRNA. The intron database includes 28 478 introns, and can be searched for patterns near the splice junctions.     

暗纹东方鲀侧线系统早期形态和生长发育

通过光镜和扫描电镜对暗纹东方鲀(Takifugu obscurus)的侧线系统进行形态学及组织学的研究。研究结果首次揭示了暗纹东方鲀侧线系统除了主侧线外还包括辅助侧线和辅助神经丘。主侧线分布主要包括眶上线、眶下线、耳后侧线、下颌线、前鳃盖线、上颞线、背侧线、腹侧线。辅助侧线和辅助神经丘分布主要包括口部辅助侧线、眶下辅助侧线、下颌前辅助侧线、下颌后辅助侧线、眶上后辅助侧线、上颞腹辅助神经丘、上颞背辅助神经丘、前鳃盖后辅助神经丘、背部辅助神经丘、尾部辅助神经丘。暗纹东方鲀侧线器官为接受机械刺激的神经丘,数目上千,神经丘分布在体表的凹槽里,且位于高低不同突起顶端。神经丘由套细胞、支持细胞和感觉毛细胞组成。感觉毛细胞呈圆形排列,并且每个细胞的游离面均有一根动纤毛和几十根静纤毛。据本研究对暗纹东方鲀侧线分布特征和神经丘的生长特征等的观察结果,认为尽管暗纹东方鲀侧线系统没有如其他真骨鱼类的管道系统,但是依然具有两套不同生理机能的机械感受系统,符合"七管模式"的主侧线神经丘与管道神经丘同源,而辅助侧线和辅助神经丘才是真正的表面神经丘。     

The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases

Cleavage of peptidoglycan plays an important role in bacterial cell division, cell growth and cell lysis. Here, we reveal that several known peptidoglycan amidases fall into a family, which includes many proteins of previously unknown function. The family includes two different peptidoglycan cleavage activities: L-muramoyl-L-alanine amidase and D-alanyl-glycyl endopeptidase activity. The family includes the amidase portion of the bifunctional glutathionylspermidine synthase/amidase enzyme from bacteria and pathogenic trypanosomes. The glutathionylspermidine synthase is thought to be a key component of the alternative pathway in trypanosomes for protection from oxygen-radical damage and has been proposed as a potential drug target. The CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain is often found in association with other domains that cleave peptidoglycan. The large number of multifunctional hydrolases suggests that they might act in a cooperative manner to cleave specialized substrates.     

The origin and evolution of green algal and plant actins

The Viridiplantae are subdivided into two groups: the Chlorophyta, which includes the Chlorophyceae, Trebouxiophyceae, Ulvophyceae, and Prasinophyceae; and the Streptophyta, which includes the Charophyceae and all land plants. Within the Streptophyta, the actin genes of the angiosperms diverge nearly simultaneously from each other before the separation of monocots and dicots. Previous evolutionary analyses have provided limited insights into the gene duplications that have produced these complex gene families. We address the origin and diversification of land plant actin genes by studying the phylogeny of actins within the green algae, ferns, and fern allies. Partial genomic sequences or cDNAs encoding actin were characterized from Cosmarium botrytis (Zygnematales), Selaginella apoda (Selaginellales), Anemia phyllitidis (Polypodiales), and Psilotum triquetrum (Psilotales). Selaginella contains at least two actin genes. One sequence (Ac2) diverges within a group of fern sequences that also includes the Psilotum Ac1 actin gene and one gymnosperm sequence (Cycas revoluta Cyc3). This clade is positioned outside of the angiosperm actin gene radiation. The second Selaginella sequence (Ac1) is the sister to all remaining land plant actin sequences, although the internal branches in this portion of the tree are very short. Use of complete actin-coding regions in phylogenetic analyses provides support for the separation of angiosperm actins into two classes. N-terminal "signature" sequence analyses support these groupings. One class (VEG) includes actin genes that are often expressed in vegetative structures. The second class (REP) includes actin genes that trace their ancestry within the vegetative actins and contains members that are largely expressed in reproductive structures. Analysis of intron positions within actin genes shows that sequences from both Selaginella and Cosmarium contain the conserved 20-3, 152-1, and 356-3 introns found in many members of the Streptophyta. In addition, the Cosmarium actin gene contains a novel intron at position 76-1.     

System of the class Holothuroidea

Various interpretations of the holothurian system and phylogeny are critically reviewed and the main characters that form the basis of the existing systematics of this group are analyzed. A system of holothurians based on thorough analysis of their morphology and anatomy is proposed. Four subclasses are recognized in the class Holothuroidea: Arthrochirotacea, Synaptacea, Elpidiacea, and Holothuriacea. The subclass Arthrochirotacea includes the extinct Paleozoic order Arthrochirotida. The subclass Synaptacea includes the order Synaptida with two suborders and three families. The subclass Elpidiacea includes the order Elasipodida with four families. The subclass Holothuriacea includes four orders: Aspidochirotida with five families; Dendrochirotida with 15 families (14 extant and one extinct); Molpadiida with three families; Gephyrothuriida with one family and two genera Gephyrothuria and Hadalothuria. The order Gephyrothuriida is re-established. The order Dactylochirotida Pawson et Fell, 1965 is synonymized under the order Dendrochirotida. A new suborder Cucumariina and new family Mesothuriidae are described. The family Vaneyellidae is synonymized under the family Cucumariidae. Four subfamilies are classified as families: Cladolabidae, Sclerothyonidae, Monilipsolidae, and Thyonidiidae.     

A protein complex mediating mRNA degradation in Escherichia coli

mRNA degradation in Escherichia coli is mediated by a combination of exo- and endoribolucleases. We present evidence for a multiprotein complex which includes at least two enzymes that play important roles in mRNA degradation: the exoribonuclease poly-nucleotide phosphorylase (PNPase) and the endorlbo-nuclease RNase E. An activity which impedes the processive activity of PNPase at stem-loop structures also appears to be associated with the complex. This complex is estimated to have a molecular mass of about 500 kDa and includes several additional poly-peptides whose functions are unknown. The identification of a complex which includes several activities associated with mRNA degradation has implications for the mechanisms and co-ordinated control of mRNA degradation.     

Biogeographical affinities among Neotropical cloud forests

 Biogeographical affinities among cloud forests in the Neotropical region were studied through a track approach, by constructing generalised tracks based on the results of a parsimony analysis of endemicity (PAE). Distributional data on 946 genera and 1,266 species of vascular plants (Pteridophyta, angiosperms, and gymnosperms) from 26 cloud forest patches from Colombia, Costa Rica, Cuba, Honduras, Jamaica, Mexico, Peru, Puerto Rico, and Venezuela were analysed; and four localities from eastern and western United States were also included as outgroups. The track analysis identified six generalised tracks: a first one that includes the majority of the cloud forests of Mexico, Central America, the Antilles, and northern Colombia; a second one that includes southern Mexico and northern Central America; a third one that includes the mountains in northwestern South America; a fourth one that includes the mountains in southwestern South America; and two others in western and eastern United States. It is concluded that the Neotropical cloud forests are closely related and that those of the Caribbean subregion exhibit complex relationships, which could be due to the complex tectonic history of the area. Received February 22, 2001 Accepted May 1, 2001     

离褶伞属菌株酯酶同工酶分析

对45个离褶伞属真菌菌株进行酯酶同工酶聚丙烯酰胺凝胶电泳(PAGE)分析,分析其酶谱多态性,并采用聚类分析方法对菌株间的亲缘关系进行鉴定。结果表明:在45个离褶伞属菌株酯酶同工酶酶谱中,共检测到了10条相对迁移率不同的酶带,多态性较高,并且在相似系数为0.75时,可将供试菌株分为4类,第一类包括17个菌株,第二类包括16个菌株,第三类包括11个菌株,第四类包括1个菌株。