Climate change affects Galliformes taxonomic,phylogenetic and functional diversity indexes,shifting conservation priority areas in China

Aim

Comprehensive biodiversity protection necessitates the consideration of multiple indexes of diversity, and how the distribution patterns of priority areas may shift under climate change. Galliformes is a globally endangered avian order vulnerable to climate change that provide an important indicator for wildlife conservation effectiveness. Here, we identified priority areas for conserving Galliformes taxonomic, phylogenetic, and functional diversity in China and their spatial dynamics subject to climate change, and examined how well existing protected areas align with current and future priority areas.

Location

China.

Methods

We applied species distribution modelling and Zonation algorithms to identify conservation priority area dynamics for 47 galliform species across three biodiversity indexes subject to three future climate change scenarios to 2050s and 2070s. We overlaid these identified priority areas onto existing national nature reserves and national parks to assess and project their effectiveness.

Results

Current priority areas proved spatially incongruent between indexes, with an optimal area overlap comprising just 10.3% of China's land area, lying largely outside of existing protected areas. Furthermore, over 80% of modelled optimal priority areas currently lacked formal conservation status. Future priority areas will shift substantially under climate change, to an extent dependent on greenhouse gas emission scenarios. Nevertheless, we identified five large regions where optimal Galliformes diversity indexes should remain stable under all scenarios, thus providing potential climatic refugia, if protected from human encroachment.

Main Conclusions

The current deficits we identified for Galliformes protection in China resonate with a broader need for hierarchical conservation strategic planning across regions and ecosystems to ensure long-term biodiversity protection, accommodating for climate change.     

The use of DNA barcodes to estimate phylogenetic diversity in forest communities of southern China

To elucidate potential ecological and evolutionary processes associated with the assembly of plant communities, there is now widespread use of estimates of phylogenetic diversity that are based on a variety of DNA barcode regions and phylogenetic construction methods. However, relatively few studies consider how estimates of phylogenetic diversity may be influenced by single DNA barcodes incorporated into a sequence matrix (conservative regions vs. hypervariable regions) and the use of a backbone family‐level phylogeny. Here, we use general linear mixed‐effects models to examine the influence of different combinations of core DNA barcodes (rbcL, matK, ITS, and ITS2) and phylogeny construction methods on a series of estimates of community phylogenetic diversity for two subtropical forest plots in Guangdong, southern China. We ask: (a) What are the relative influences of single DNA barcodes on estimates phylogenetic diversity metrics? and (b) What is the effect of using a backbone family‐level phylogeny to estimate topology‐based phylogenetic diversity metrics? The combination of more than one barcode (i.e., rbcL + matK + ITS) and the use of a backbone family‐level phylogeny provided the most parsimonious explanation of variation in estimates of phylogenetic diversity. The use of a backbone family‐level phylogeny showed a stronger effect on phylogenetic diversity metrics that are based on tree topology compared to those that are based on branch lengths. In addition, the variation in the estimates of phylogenetic diversity that was explained by the top‐rank models ranged from 0.1% to 31% and was dependent on the type of phylogenetic community structure metric. Our study underscores the importance of incorporating a multilocus DNA barcode and the use of a backbone family‐level phylogeny to infer phylogenetic diversity, where the type of DNA barcode employed and the phylogenetic construction method used can serve as a significant source of variation in estimates of phylogenetic community structure.     

Climate change drives a shift in peatland ecosystem plant community: Implications for ecosystem function and stability

The composition of a peatland plant community has considerable effect on a range of ecosystem functions. Peatland plant community structure is predicted to change under future climate change, making the quantification of the direction and magnitude of this change a research priority. We subjected intact, replicated vegetated poor fen peat monoliths to elevated temperatures, increased atmospheric carbon dioxide (CO₂), and two water table levels in a factorial design to determine the individual and synergistic effects of climate change factors on the poor fen plant community composition. We identify three indicators of a regime shift occurring in our experimental poor fen system under climate change: nonlinear decline of Sphagnum at temperatures 8 °C above ambient conditions, concomitant increases in Carex spp. at temperatures 4 °C above ambient conditions suggesting a weakening of Sphagnum feedbacks on peat accumulation, and increased variance of the plant community composition and pore water pH through time. A temperature increase of +4 °C appeared to be a threshold for increased vascular plant abundance; however the magnitude of change was species dependent. Elevated temperature combined with elevated CO₂ had a synergistic effect on large graminoid species abundance, with a 15 times increase as compared to control conditions. Community analyses suggested that the balance between dominant plant species was tipped from Sphagnum to a graminoid‐dominated system by the combination of climate change factors. Our findings indicate that changes in peatland plant community composition are likely under future climate change conditions, with a demonstrated shift toward a dominance of graminoid species in poor fens.     

Climate change impact on seaweed meadow distribution in the North Atlantic rocky intertidal

The North-Atlantic has warmed faster than all other ocean basins and climate change scenarios predict sea surface temperature isotherms to shift up to 600 km northwards by the end of the 21st century. The pole-ward shift has already begun for many temperate seaweed species that are important intertidal foundation species. We asked the question: Where will climate change have the greatest impact on three foundational, macroalgal species that occur along North-Atlantic shores: Fucus serratus, Fucus vesiculosus, and Ascophyllum nodosum? To predict distributional changes of these key species under three IPCC (Intergovernmental Panel on Climate Change) climate change scenarios (A2, A1B, and B1) over the coming two centuries, we generated Ecological Niche Models with the program MAXENT. Model predictions suggest that these three species will shift northwards as an assemblage or “unit” and that phytogeographic changes will be most pronounced in the southern Arctic and the southern temperate provinces. Our models predict that Arctic shores in Canada, Greenland, and Spitsbergen will become suitable for all three species by 2100. Shores south of 45° North will become unsuitable for at least two of the three focal species on both the Northwest- and Northeast-Atlantic coasts by 2200. If these foundational species are unable to adapt to the rising temperatures, they will lose their centers of genetic diversity and their loss will trigger an unpredictable shift in the North-Atlantic intertidal ecosystem.     

Climate change enhances the negative effects of predation risk on an intermediate consumer

Predators are a major source of stress in natural systems because their prey must balance the benefits of feeding with the risk of being eaten. Although this ‘fear’ of being eaten often drives the organization and dynamics of many natural systems, we know little about how such risk effects will be altered by climate change. Here, we examined the interactive consequences of predator avoidance and projected climate warming in a three‐level rocky intertidal food chain. We found that both predation risk and increased air and sea temperatures suppressed the foraging of prey in the middle trophic level, suggesting that warming may further enhance the top‐down control of predators on communities. Prey growth efficiency, which measures the efficiency of energy transfer between trophic levels, became negative when prey were subjected to predation risk and warming. Thus, the combined effects of these stressors may represent an important tipping point for individual fitness and the efficiency of energy transfer in natural food chains. In contrast, we detected no adverse effects of warming on the top predator and the basal resources. Hence, the consequences of projected warming may be particularly challenging for intermediate consumers residing in food chains where risk dominates predator‐prey interactions.     

Climate variability and change over southern Africa: impacts and challenges

In this paper, the influence of climate variability and change on the environment was studied over southern Africa using ground-based and remotely sensed data. A time series analysis of rainfall and temperature anomalies indicated that there was a high rainfall and temperature variability in the region. The influence of global teleconnections on rainfall patterns over southern Africa showed that in some areas there was a spatial variation in their strength, increasing from west to east. Maps of NDVI, from 1982 to 2004, showed that changes in vegetation cover were more apparent during the dry season than during the wet season. The study also revealed that climate variability and change are linked to decreasing rainfall and hence, decreasing regional water resources and biodiversity and increasing environmental degradation. With the regional population expected increase, this depletion of resources poses the greatest regional environmental challenge to humankind.     

Local trampling disturbance effects on alpine plant populations and communities: Negative implications for climate change vulnerability

Global change is modifying species communities from local to landscape scales, with alterations in the abiotic and biotic determinants of geographic range limits causing species range shifts along both latitudinal and elevational gradients. An important but often overlooked component of global change is the effect of anthropogenic disturbance, and how it interacts with the effects of climate to affect both species and communities, as well as interspecies interactions, such as facilitation and competition. We examined the effects of frequent human trampling disturbances on alpine plant communities in Switzerland, focusing on the elevational range of the widely distributed cushion plant Silene acaulis and the interactions of this facilitator species with other plants. Examining size distributions and densities, we found that disturbance appears to favor individual Silene growth at middle elevations. However, it has negative effects at the population level, as evidenced by a reduction in population density and reproductive indices. Disturbance synergistically interacts with the effects of elevation to reduce species richness at low and high elevations, an effect not mitigated by Silene. In fact, we find predominantly competitive interactions, both by Silene on its hosted and neighboring species and by neighboring (but not hosted) species on Silene. Our results indicate that disturbance can be beneficial for Silene individual performance, potentially through changes in its neighboring species community. However, possible reduced recruitment in disturbed areas could eventually lead to population declines. While other studies have shown that light to moderate disturbances can maintain high species diversity, our results emphasize that heavier disturbance reduces species richness, diversity, as well as percent cover, and adversely affects cushion plants and that these effects are not substantially reduced by plant–plant interactions. Heavily disturbed alpine systems could therefore be at greater risk for upward encroachment of lower elevation species in a warming world.     

Extinction hazards in experimental Daphnia magna populations: effects of genotype diversity and environmental variation

Extinction is ubiquitous in natural systems and the ultimate fate of all biological populations. However, the factors that contribute to population extinction are still poorly understood, particularly genetic diversity and composition. A laboratory experiment was conducted to examine the influences of environmental variation and genotype diversity on persistence in experimental Daphnia magna populations. Populations were initiated in two blocks with one, two, three, or six randomly selected and equally represented genotypes, fed and checked for extinction daily, and censused twice weekly over a period of 170 days. Our results show no evidence for an effect of the number of genotypes in a population on extinction hazard. Environmental variation had a strong effect on hazards in both experimental blocks, but the direction of the effect differed between blocks. In the first block, variable environments hastened extinction, while in the second block, hazards were reduced under variable food input. This occurred despite greater fluctuations in population size in variable environments in the second block of our experiment. Our results conflict with previous studies, where environmental variation consistently increased extinction risk. They are also at odds with previous studies in other systems that documented significant effects of genetic diversity on population persistence. We speculate that the lack of sexual reproduction, or the phenotypic similarity among our experimental lines, might underlie the lack of a significant effect of genotype diversity in our study.     

Ensemble models predict Important Bird Areas in southern Africa will become less effective for conserving endemic birds under climate change

Aim  To examine the impacts of climate change on endemic birds, which are of global significance for conservation, on a continent with few such assessments. We specifically assess projected range changes in relation to the Important Bird Areas (IBAs) network and assess the possible consequences for conservation.
Location  South Africa, Lesotho and Swaziland.
Methods  The newly emerging ensemble modelling approach is used with 50 species, four climate change models for the period 2070–2100 and eight bioclimatic niche models in the statistical package biomod . Model evaluation is done using the receiver operating characteristic and the recently introduced true skill statistic. Future projections are made considering two extreme assumptions: species have full dispersal ability and species have no dispersal ability. A consensus forecast is identified using principal components analysis. This forecast is interpreted in terms of the IBA network. An irreplaceability analysis is used to highlight priority IBAs for conservation attention in terms of climate change.
Results  The majority of species (62%) are predicted to lose climatically suitable space. Five species lose at least 85% of their climatically suitable space. Many IBAs lose species (41%; 47 IBAs) and show high rates of species turnover of more than 50% (77%; 95 IBAs). Highly irreplaceable regions for endemic species become highly localized under climate change, meaning that the endemic species analysed here experience similar range contractions to maintain climate niches.
Main conclusions  The South African IBAs network is likely to become less effective for conserving endemic birds under climate change. The irreplaceability analysis identified key refugia for endemic species under climate change, but many of these areas are not currently IBAs. In addition, many of these high-priority areas that are IBAs fall outside the current formal protected areas network.     

Climate change and plant dispersal along corridors in fragmented landscapes of Mesoamerica

Climate change is a threat to biodiversity, and adaptation measures should be considered in biodiversity conservation planning. Protected areas (PA) are expected to be impacted by climate change and improving their connectivity with biological corridors (BC) has been proposed as a potential adaptation measure, although assessing its effectiveness remains a challenge. In Mesoamerica, efforts to preserve the biodiversity have led to the creation of a regional network of PA and, more recently, BC. This study evaluates the role of BC for facilitating plant dispersal between PA under climate change in Mesoamerica. A spatially explicit dynamic model (cellular automaton) was developed to simulate species dispersal under different climate and conservation policy scenarios. Plant functional types (PFT) were defined based on a range of dispersal rates and vegetation types to represent the diversity of species in the region. The impacts of climate change on PA and the role of BC for dispersal were assessed spatially. Results show that most impacted PA are those with low altitudinal range in hot, dry, or high latitude areas. PA with low altitudinal range in high cool areas benefit the most from corridors. The most important corridors cover larger areas and have high altitude gradients. Only the fastest PFT can keep up with the expected change in climate and benefit from corridors for dispersal. We conclude that the spatial assessment of the vulnerability of PA and the role of corridors in facilitating dispersal can help conservation planning under a changing climate.     

Patterns of geophyte diversity and storage organ size in the winter-rainfall region of southern Africa

The winter‐rainfall region of southern Africa, covered largely by the fynbos and succulent karoo biomes, harbours the world's greatest concentration of geophyte species. Species diversity is greatest in the south‐west, where more than 500 species co‐occur in one quarter‐degree square; in the south‐east the values are generally around 100, and in the arid north‐west, always less than 50 (more often less than 10). In at least three species‐rich genera (Moraea, Eriospermum and Oxalis), the size of storage organs (bulbs, corms, tubers) varies inversely, with the largest average values occurring in the species‐poorer areas — both in the north‐western, and in the south‐eastern parts of the region. This negative correlation between average storage organ size and species diversity is, however, only observed at relatively large spatial scales, which suggests that there is no direct relationship between storage organ size and species diversity. More likely, both these measures are driven by winter rainfall amount and reliability, both of which peak in the south‐western Cape. We suggest that reliable winter rainfall makes large storage organs unnecessary and depresses extinction rates, thus leading to the accumulation of species.     

Climate change and fire effects on a prairie–woodland ecotone: projecting species range shifts with a dynamic global vegetation model

Large shifts in species ranges have been predicted under future climate scenarios based primarily on niche‐based species distribution models. However, the mechanisms that would cause such shifts are uncertain. Natural and anthropogenic fires have shaped the distributions of many plant species, but their effects have seldom been included in future projections of species ranges. Here, we examine how the combination of climate and fire influence historical and future distributions of the ponderosa pine–prairie ecotone at the edge of the Black Hills in South Dakota, USA, as simulated by MC1, a dynamic global vegetation model that includes the effects of fire, climate, and atmospheric CO₂ concentration on vegetation dynamics. For this purpose, we parameterized MC1 for ponderosa pine in the Black Hills, designating the revised model as MC1‐WCNP. Results show that fire frequency, as affected by humidity and temperature, is central to the simulation of historical prairies in the warmer lowlands versus woodlands in the cooler, moister highlands. Based on three downscaled general circulation model climate projections for the 21st century, we simulate greater frequencies of natural fire throughout the area due to substantial warming and, for two of the climate projections, lower relative humidity. However, established ponderosa pine forests are relatively fire resistant, and areas that were initially wooded remained so over the 21st century for most of our future climate x fire management scenarios. This result contrasts with projections for ponderosa pine based on climatic niches, which suggest that its suitable habitat in the Black Hills will be greatly diminished by the middle of the 21st century. We hypothesize that the differences between the future predictions from these two approaches are due in part to the inclusion of fire effects in MC1, and we highlight the importance of accounting for fire as managed by humans in assessing both historical species distributions and future climate change effects.