Biohistorical approaches to “race” in the United States: Biological distances among African Americans,European Americans,and their ancestors

Folk taxonomies of race are the categorizations used by people in their everyday judgments concerning the persons around them. As cultural traditions, folk taxonomies may shape gene flow so that it is unequal among groups sharing geography. The history of the United States is one of disparate people being brought together from around the globe, and provides a natural experiment for exploring the relationship between culture and gene flow. The biohistories of African Americans and European Americans were compared to examine whether population histories are shaped by culture when geography and language are shared. Dental morphological data were used to indicate phenotypic similarity, allowing diachronic change through United States history to be considered. Samples represented contemporary and historic African Americans and European Americans and their West African and European ancestral populations (N = 1445). Modified Mahalanobis' D² and Mean Measure of Divergence statistics examined how biological distances change through time among the samples. Results suggest the social acceptance for mating between descendents of Western Europeans and Eastern and Southern European migrants to the United States produced relatively rapid gene flow between the groups. Although African Americans have been in the United States much longer than most Eastern and Southern Europeans, social barriers have been historically stronger between them and European Americans. These results indicate that gene flow is in part shaped by cultural factors such as folk taxonomies of race, and have implications for understanding contemporary human variation, relationships among prehistoric populations, and forensic anthropology. Am J Phys Anthropol 2009. © 2009 Wiley-Liss, Inc.     

Nutritive value of maygrass,Phalaris caroliniana

Maygrass, Phalaris caroliniana,a native annual grass used as a food resource by prehistoric Indians of the eastern United States, was analyzed for nutritive value. Protein nutrient density of maygrass grains is higher than that for other starchy seeds, oily seeds, and nuts commonly found in paleoethnobotanical samples from the region. Maygrass grains are a good source of several vitamins and minerals, especially thiamin and dietary iron. The amino acid in shortest supply is lysine. Nutritional quality of the grains may have served as an inducement for its protection or cultivation.     

A biogeochemistry‐based dynamic vegetation model and its application along a moisture gradient in the continental United States

Abstract. We develop and evaluate a large‐scale dynamic vegetation model, TEM‐LPJ, which considers interactions among water, light and nitrogen in simulating ecosystem function and structure. We parameterized the model for three plant functional types (PFTs): a temperate deciduous forest, a temperate coniferous forest, and a temperate C₃ grassland. Model parameters were determined using data from forest stands at the Harvard Forest in Massachusetts. Applications of the model reasonably simulated stand development over 120 yr for Populus tremuloides in Wisconsin and for Pinus elliottii in Florida. Our evaluation of tree‐grass interactions simulated by the model indicated that competition for light led to dominance by the deciduous forest PFT in moist regions of eastern United States and that water competition led to dominance by the grass PFT in dry regions of the central United States. Along a moisture transect at 41.5° N in the eastern United States, simulations by TEM‐LPJ reproduced the composition of potential temperate deciduous forest, temperate savanna, and C3 grassland located along the transect.     

BIOSYSTEMATIC INVESTIGATIONS IN SOUTH FLORIDA POPULATIONS OF RUELLIA (ACANTHACEAE)

Relationships of the putative Ruellia species, R. caroliniensis, R. ciliosa, R. heteromorpha, and R. succulenta were analyzed by population sampling, investigation of chromosome numbers, garden transplants, and hybridization experiments. Character data from 25 local, Florida populations and from transplants were evaluated. Some interfertility of these “taxa” was demonstrated, as was some interfertility with other species occurring in the eastern United States. Chromosome numbers are n = 17 and 2n = 34. The effect of different breeding systems on population structure is discussed. Total evidence suggests that the 4 “taxa” in question be considered ecological races of a single species widespread in the eastern United States, namely R. caroliniensis.     

Genetic variation in eastern North American and putatively introduced populations of Ceratocystis fimbriata f. platani

The plant pathogenic fungus Ceratocystis fimbriata f. platani attacks Platanus species (London plane, oriental plane and American sycamore) and has killed tens of thousands of plantation trees and street trees in the eastern United States, southern Europe and Modesto, California. Nuclear and mitochondrial DNA fingerprints and alleles of eight polymorphic microsatellite markers of isolates of C. fimbriata from these regions delineated major differences in gene diversities. The 33 isolates from the eastern United States had a moderate degree of gene diversity, and unique genotypes were found at each of seven collection sites. Fingerprints of 27 isolates from 21 collection sites in southern Europe were identical with each other; microsatellite markers were monomorphic within the European population, except that three isolates differed at one locus each, due perhaps to recent mutations. The genetic variability of C. fimbriata f. platani in the eastern United States suggests that the fungus is indigenous to this region. The genetic homogeneity of the fungus in Europe suggests that this population has gone through a recent genetic bottleneck, perhaps from the introduction of a single genotype. This supports the hypothesis that the pathogen was introduced to Europe through Naples, Italy during World War II on infected crating material from the eastern United States. The Californian population may also have resulted from introduction of one or a few related genotypes because it, too, had a single nuclear and mitochondrial genotype and limited variation in microsatellite alleles.     

Indian Potato (<Emphasis Type="Italic">Ipomoea pandurata</Emphasis>, Convolvulaceae)—A Record of Confusion<Superscript>1</Superscript>

Indian Potato ( Ipomoea pandurata , Convolvulaceae)—A Record of Confusion. Once European explorers began sending back plants from distant lands, confusion developed regarding their identities. Among these was Ipomoea pandurata, which native peoples in the eastern United States considered to be a purgative. Unfortunately, edible plants like potatoes were confused with I. pandurata, and by the early 1900s Americans and Europeans began writing that indigenous peoples also ate its roots. The literature for the late 1900s into the 2000s mostly reports that I. pandurata is edible. Although no documented use for food by pre-European cultures in the Americas has been found, the myth persists that the roots were eaten on a regular basis.     

High regional differentiation in a North American crab species throughout its native range and invaded European waters: a phylogeographic analysis

Rhithropanopeus harrisii (Gould 1841) has a native distribution from New Brunswick (Canada) to Veracruz (Mexico) and is considered an invasive species in northwestern North American (Oregon and California), South American (Brazil) and European estuaries and rivers. In Europe, it was observed for the first time in 1874, in The Netherlands. We sequenced and analyzed part of the cytochrome oxidase subunit I gene (mitochondrial DNA) of eight populations, three from the east coast of the United States of America (USA) and five from Europe, in order to assess their genetic diversity and to determine a potential founder population. European populations are characterized by a lower number of haplotypes than the whole native region of the eastern USA, suggesting that genetic bottlenecks occurred during the European colonisation. Along the North American East Coast, there is evidence of clearcut genetic heterogeneity, New Jersey being the most similar population in its genetic structure to the postulated Europe-founding population. Also the different European populations are heterogeneous and there is a tendency of higher genetic diversity in the populations founded earlier. R. harrisii is still in the process of expansion in Europe and may have been introduced once or repeatedly by different invasion mechanisms. The pronounced lack of gene flow among populations is of great ecological significance, since it may facilitate rapid adaptation and specialization to local conditions within single estuarine systems.     

Corn pith weevil,Geraeus penicillus (Coleoptera: Curculionidae), in transgenic,insect‐resistant and conventional field corn hybrids

The corn pith weevil Geraeus penicillus (Herbst) is occasionally found boring in corn stalks throughout the eastern and Midwestern United States. Injury caused by G. penicillus is not typically economical, but may be confused with that of the European corn borer Ostrinia nubilalis (Hubner), an important economic pest throughout the United States. During efforts to assess European corn borer infestations, we discovered G. penicillus in field corn in south‐eastern Pennsylvania, including hybrids genetically modified (i.e. Bt hybrids) to control European corn borer among other herbivore species. Our analysis across sites indicated that tunnels of G. penicillus were significantly more abundant in transgenic Bt hybrids than non‐Bt hybrids, but comparisons of Bt hybrids and their near isolines revealed mostly similar numbers of G. penicillus tunnels, suggesting other hybrid features might be affecting the distribution of G. penicillus. Tunnels of G. penicillus were equally distributed among the three transgenic trait packages represented in our study. In plants where we found G. penicillus, tunnels were more abundant in stalks free of European corn borer damage. Our report appears to be the first to note G. penicillus feeding in Bt corn hybrids. These findings are notable because they document insect damage in Bt hybrids that may be mistaken for European corn borer damage and may provide evidence of an insect herbivore proliferating following a mild winter or possibly even moving into competitor‐free space.     

Temporal pattern of africanization in a feral honeybee population from Texas inferred from mitochondrial DNA

The invasion of Africanized honeybees (Apis mellifera L.) in the Americas provides a window of opportunity to study the dynamics of secondary contact of subspecies of bees that evolved in allopatry in ecologically distinctive habitats of the Old World. We report here the results of an 11-year mitochondrial DNA survey of a feral honeybee population from southern United States (Texas). The mitochondrial haplotype (mitotype) frequencies changed radically during the 11-year study period. Prior to immigration of Africanized honeybees, the resident population was essentially of eastern and western European maternal ancestry. Three years after detection of the first Africanized swarm there was a mitotype turnover in the population from predominantly eastern European to predominantly A. m. scutellata (ancestor of Africanized honeybees). This remarkable change in the mitotype composition coincided with arrival of the parasitic mite Varroa destructor, which was likely responsible for severe losses experienced by colonies of European ancestry. From 1997 onward the population stabilized with most colonies of A. m. scutellata maternal origin.     

Evaluating spatially explicit viability of a declining ruffed grouse population

Species associated with early successional habitats have experienced dramatic declines in the eastern United States as a result of land use changes and human disruption of natural disturbance regimes. Consequently, active management is required to create early successional habitat and promote plant and animal communities that depend on periodic forest disturbance. Ruffed grouse (Bonasa umbellus) depend on recently disturbed forest habitat, and have experienced dramatic declines over the last half-century. Although ruffed grouse are extensively studied, little effort has been made to link population dynamics with habitat management at landscape scales. We used stochastic, spatially explicit population models that combined landscape conditions derived from a Geographic Information System with demographic data, and applied the model to a declining ruffed grouse population in Rhode Island, USA. We identified vital rates that influence ruffed grouse population dynamics using baseline models constructed with current demographic rates and landscape conditions, and assessed the effect of landscape-scale forest management alternatives on population persistence by running multiple management simulations. Baseline models typically predicted population decline, and we concluded that vital rates (survival and recruitment) had a greater influence on population persistence than did dispersal capability, carrying capacity, or initial population size. Management simulations predicted greater population persistence under a scenario where high-quality habitat was provided in fewer large blocks as opposed to many small blocks, and the rate at which we allowed ruffed grouse to colonize newly created habitat had a substantial impact on management success. Populations of ruffed grouse in the eastern United States are likely to continue to decline given current disturbance regimes, and our work provides a link between ruffed grouse demography and landscape-scale habitat conditions to support management decisions. © 2011 The Wildlife Society.     

Sandstone rockhouses of the eastern United States,with particular reference to the ecology and evolution of the endemic plant taxa

Rockhouses are semicircular recesses extending far back under cliff overhangs that are large enough to provide shelter for humans. The largest sandstone rockhouses in the eastern United States are at the heads of gorges, and they are in stream valleys cut during the Pleistocene; most are formed in Mississippian and Pennsylvanian-age rocks. Compared to the surrounding environment, the interior of rockhouses is shaded, is warmer during winter and cooler during summer, and has lower evaporation rates and higher humidities. Water enters rockhouses primarily by groundwater seepage and by dripping from the ceiling. Soil consists mostly of sand with low pH, but high levels of some nutrients are associated with saltpeter earth and with ecofactual and artifactual remains left by human occupants during prehistoric time. Most plant taxa in sandstone rockhouses in eastern United States are native C₃ phanerophytes or hemicryptophytes, and similarities in species composition among rockhouses are low. Eleven plant taxa belonging to eight families of flowering plants and ferns are endemic or nearly endemic to sandstone rockhouses in eastern United States. Three endemics are restricted to the gorges of a single river, and only one taxon ranges far north of the Wisconsinan Glacial Boundary. The endemic ferns are Tertiary relicts derived from tropical taxa. The majority of endemic flowering plants are derived from temperate taxa that grow in habitats in the vicinity of rockhouses; their relative age ranges from Late Tertiary to the Recent. All the endemic taxa are perennial; two ferns occur as independent gametophytes. The endemic taxa of rockhouses are threatened primarily by disturbances associated with recreation.     

Response of grassland birds to management in national battlefield parks

Grassland birds are in steep decline, with population declines reported in 74% of North American grassland species in the past 50 years. Declines are particularly severe in the eastern United States where they are influenced by habitat loss and alteration due to urbanization, forest regrowth, and agricultural intensification. The United States National Park Service maintains civil war battlefields in the eastern United States as historical and cultural parks that may also provide habitat refuge for grassland birds within an increasingly urbanized matrix. To assess the conservation importance of battlefield parks and the role of park management in sustaining grassland birds, we surveyed for 2 declining grassland-breeding species, eastern meadowlark (Sturnella magna) and grasshopper sparrow (Ammodramus savannarum), at 242 points across 4 battlefield parks in Maryland, Virginia, and West Virginia, USA, from 2014–2019 and in 2021. We modeled the effects of park management activities (prescribed fire, agricultural leases, and delayed harvest) and habitat and landscape characteristics on breeding-season occupancy. There was support for the influence of local habitat features, landscape, and management. Breeding-season occupancy of both species was consistently higher in hayfields and pasture than in row crops, and both species responded positively to hay and crop harvest delays intended for grassland bird conservation. Prescribed fire within the past 2 years had a positive effect on occupancy of grasshopper sparrows but did not influence eastern meadowlarks. Eastern meadowlarks responded to land cover at multiple spatial scales that are influenced by land use within and outside the parks. Management activities that maintain the parks' cultural goals, including partnerships between national parks and private agricultural operators, are likely to provide valuable habitat for these 2 obligate grassland birds.     

Phylogeography of the freshwater raphidophyte Gonyostomum semen confirms a recent expansion in northern Europe by a single haplotype

Gonyostmum semen is a freshwater raphidophyte that has increased in occurrence and abundance in several countries in northern Europe since the 1980s. More recently, the species has expanded rapidly also in north‐eastern Europe, and it is frequently referred to as invasive. To better understand the species history, we have explored the phylogeography of G. semen using strains from northern Europe, United States, and Japan. Three regions of the ribosomal RNA gene (small subunit [SSU], internal transcribed spacer [ITS] and large subunit [LSU]) and one mitochondrial DNA marker (cox1) were analyzed. The SSU and partial LSU sequences were identical in all strains, confirming that they belong to the same species. The ITS region differentiated the American from the other strains, but showed high intra‐strain variability. In contrast, the mitochondrial marker cox1 showed distinct differences between the European, American, and Japanese strains. Interestingly, only one cox1 haplotype was detected in European strains. The overall low diversity and weak geographic structure within northern European strains supported the hypothesis of a recent invasion of new lakes by G. semen. Our data also show that the invasive northern European lineage is genetically distinct from the lineages from the other continents. Finally, we concluded that the mitochondrial cox1 was the most useful marker in determining large‐scale biogeographic patterns in this species.     

Widespread inbreeding and unexpected geographic patterns of genetic variation in eastern hemlock (Tsuga canadensis), an imperiled North American conifer

Eastern hemlock (Tsuga canadensis [L.] Carr.) is an ecologically important tree species experiencing severe mortality across much of its eastern North American distribution, caused by infestation of the exotic hemlock woolly adelgid (Adelges tsugae Annand). To guide gene conservation strategies for this imperiled conifer, we conducted a range-wide genetic variation study for eastern hemlock, amplifying 13 highly polymorphic nuclear microsatellite loci in 1,180 trees across 60 populations. The results demonstrate that eastern hemlock exhibits moderate inbreeding, possibly a signature of a prehistoric decline associated with a widespread insect outbreak. Contrary to expectations, populations in formerly glaciated regions are not less genetically diverse than in the putative southern refugial region. As expected, peripheral disjunct populations are less genetically diverse than main-range populations, but some are highly genetically differentiated or contain unique alleles. Spatially explicit Bayesian clustering analyses suggest that three or four Pleistocene glacial refuges may have existed in the Southeastern United States, with a main post-glacial movement into the Northeast and the Great Lakes region. Efforts to conserve eastern hemlock genetic material should emphasize the capture of broad adaptability that occurs across the geographic range of the species, as well as genetic variability within regions with the highest allelic richness and heterozygosity, such as the Southern Appalachians and New England, and within disjunct populations that are genetically distinct. Much genetic variation exists in areas both infested and uninfested by the adelgid.     

Can Coyotes Affect Deer Populations in Southeastern North America?

ABSTRACT The coyote (Canis latrans) is a recent addition to the fauna of eastern North America, and in many areas coyote populations have been established for only a decade or two. Although coyotes are known predators of white-tailed deer (Odocoileus virginianus) in their historic range, effects this new predator may have on eastern deer populations have received little attention. We speculated that in the southeastern United States, coyotes may be affecting deer recruitment, and we present 5 lines of evidence that suggest this possibility. First, the statewide deer population in South Carolina has declined coincident with the establishment and increase in the coyote population. Second, data sets from the Savannah River Site (SRS) in South Carolina indicate a new mortality source affecting the deer population concurrent with the increase in coyotes. Third, an index of deer recruitment at SRS declined during the period of increase in coyotes. Fourth, food habits data from SRS indicate that fawns are an important food item for coyotes during summer. Finally, recent research from Alabama documented significant coyote predation on fawns there. Although this evidence does not establish cause and effect between coyotes and observed declines in deer recruitment, we argue that additional research should proactively address this topic in the region. We identified several important questions on the nature of the deer—coyote relationship in the East.     

Within plant interspecific competition does not limit the highly invasive thrips,Frankliniella occidentalis in Florida

1. Species invasions are often linked to reductions in biodiversity, and competitive superiority is often cited as the main reason for the success of an invasive species. Although invaded ecosystems are often examined, few have studied areas in which an invasive species has failed to successfully invade. 2. The western flower thrips, Frankliniella occidentalis (Pergande) (Thysanoptera: Thripidae), is a damaging pest and tospovirus vector that has invaded most of the world, and competitive superiority is considered one of the main reasons for this species' success. 3. However, a recent study demonstrated that competition between larval F. occidentalis and a native thrips species may be limiting F. occidentalis abundance in much of the eastern United States. Frankliniella occidentalis also has a limited abundance in central and southern Florida, which is dominated by the endemic F. bispinosa (Morgan). The potential for interspecific competition to limit F. occidentalis abundance in Florida was assessed. 4. The effects of competition between F. occidentalis and F. bispinosa on adult reproduction on a common host (Capsicum annuum L.) were quantified, using a response surface experimental design and a combination of linear and non‐linear competition models. 5. Evidence of symmetric competition between these thrips species was found, but contrary to expectations, F. occidentalis reproduced more in dense interspecific populations than F. bispinosa. These results suggest that, unlike most of the eastern US, interspecific competition is not important in limiting F. occidentalis abundance in central and southern Florida.     

Africanization in the United States: replacement of feral European honeybees (Apis mellifera L.) by an African hybrid swarm

The expansion of Africanized honeybees from South America to the southwestern United States in <50 years is considered one of the most spectacular biological invasions yet documented. In the American tropics, it has been shown that during their expansion Africanized honeybees have low levels of introgressed alleles from resident European populations. In the United States, it has been speculated, but not shown, that Africanized honeybees would hybridize extensively with European honeybees. Here we report a continuous 11-year study investigating temporal changes in the genetic structure of a feral population from the southern United States undergoing Africanization. Our microsatellite data showed that (1) the process of Africanization involved both maternal and paternal bidirectional gene flow between European and Africanized honeybees and (2) the panmitic European population was replaced by panmitic mixtures of A. m. scutellata and European genes within 5 years after Africanization. The post-Africanization gene pool (1998-2001) was composed of a diverse array of recombinant classes with a substantial European genetic contribution (mean 25-37%). Therefore, the resulting feral honeybee population of south Texas was best viewed as a hybrid swarm.     

Assessment of Canada Lynx Research and Conservation Needs in the Southern Range: Another Kick at the Cat

Abstract The ecology of Canada lynx (Lynx canadensis) and their main prey, snowshoe hares (Lepus americanus), is poorly understood in southern Canada and the contiguous United States compared to the boreal forest of Canada and Alaska, USA, where both species are well studied. However, given recent listing of lynx under the Endangered Species Act, accurate understanding of lynx and snowshoe hare ecology and conservation requirements in the United States is a high priority. We critically examined unchallenged perceptions and important research needs related to lynx and hare ecology and conservation at the southern extent of their range. Contrary to popular dogma, lynx do not require old-growth forest for denning, but further research on lynx and hare use of fragmented landscapes at lower latitudes is required. The contention that southern lynx are subject to higher interference or exploitative competition compared to their northern counterparts remains without strong empirical support. Lynx rely more on red squirrels (Tamiasciurus hudsonicus) and possibly other alternate prey at lower latitudes, but hares are the predominant food type for lynx across their range. Southern lynx and hare populations do not exhibit periodic cyclicity, but harvest statistics suggest that lynx abundance in the southern range is highly variable, implying that numerical fluctuations likely are fueled by immigration from Canada. Southern lynx population viability in the absence of ingress is suspect and thus maintaining connectivity with northern areas of occupancy should be a priority. Successful conservation of lynx populations in the contiguous United States will require 1) improved understanding of lynx population and habitat ecology at lower latitudes, 2) protection and management of large tracts of lynx and snowshoe hare habitat, and 3) ensured connectivity between lynx populations at the core and periphery of the species' range. However, in light of the numerous challenges facing conservation of populations of many species at their southern distributional limit, the long-term prognosis for lynx in the southern range currently is uncertain.     

Coexistence of white-footed mice and deer mice may be mediated by fluctuating environmental conditions

White-footed mice, Peromyscus leucopus noveboracensis, and deer mice, P. maniculatus nubiterrae, occur sympatically throughout much of the Appalachian Mountains of the eastern United States. Previous studies have shown that these two species are behaviorally and ecologically similar and do not partition food or microhabitat. In this paper I use a 14-year data set to demonstrate that the two species have differential population growth and survival rates in response to food abundance and season, which may mediate their coexistence. The ratio of white-footed mice to deer mice ranged from 0.5:1 to 6:1. During summer and times of tood abundance, white-footed mice gained a numerical advantage over deer mice in 10 of 14 years, whereas following winter and poor food production, deer mice had higher survival in 9 of 13 years. The major decline in white-foote mice, but not deer mice, was associated with poor mast (acorn) production in autumn. Differential survival of deer mice may be due to their physiological adaptations to cold temperature and efficient use of torpor during food shortage. Inter-year variance in food production and climatic conditions appear to change the competitive advantage of each species often enough to permit coexistence. Coexistence of these two ecologically similar species may be maintained by different physiological limitations in a fluctuating environment.     

General Patterns in Invasion Ecology Tested in the Dutch Wadden Sea: The Case of a Brackish-Marine Polychaetous Worm

The success of invasive aquatic species is determined by a variety of attributes such as wide environmental tolerance, high genetic variability, short generation time, early sexual maturity, high reproductive capacity, and a broad diet. Usually, introduced species, after some time lag since inoculation, show an exponential population increase and expansion. Maintenance of the immigrant species at a high population level will be dependent on interspecific competition with native species and availability of habitat and food. Eventually, the immigrant population may decline, for instance due to increased predation pressure, parasite infestation or loss of genetic vigour. These characteristic patterns in invasive species are reviewed for the case of the North American spionid polychaete Marenzelleria cf. wireni in the Dutch Wadden Sea. This species was first recorded in estuaries and coastal waters of the European continent in the Ems estuary (eastern Dutch Wadden Sea) in 1983. In the western part of the Dutch Wadden Sea the first specimens were found in 1989. The Ems estuary population showed the typical lag-phase, explosive increase, stabilisation, and eventual decline. In the western part of the Dutch Wadden Sea the latter two phases have not yet developed. The strong development and stabilisation of the population in the Ems estuary may have been caused by the availability of a yet not utilised food source. The species' final decline remains largely unexplained.