Cloning and biological activity of an anti-tumor peptide of Tumstatin

To obtain an anti-tumor peptide of Tumstatin and detect its biological activity,the nucleotide sequence encoding 185-203 amino acids (19peptide) of Tumstatin was synthesized and inserted into the fusion protein vector pTYB2.After identification by sequencing and restriction endonucleases,the recombined vector was transformed into BL-21 (DE3) E.coli competent cells.Transformed E.coli BL-21 (DE3) were induced by isopropyl-β-thiogalactopyranoside (IPTG),and then expressed.By 1,4-dithiothreitol (DTT)reduction,the soluble 19peptide was obtained from a chitin affinity chromatograph.The biological activity of 19peptide was determined by 3-[4,5-dimethylthiazol-2-y1]-2,5-diphenytetrazolium bromide (MTT) assay,cell growth curve,the effect of the ascitic fluid transfevent H22 hepatoma on mice and via histopathological slices.The purified 19peptide directly inhibited proliferation and migration of murine B16 melanoma cells,SMMC-7721hepatoma carcinoma cells and human umbilical vein endothelial cells (HUVEC).The tumor inhibition rate of mice ascitic fluid transfevent H22 hepatoma was 48.46%.Histopathological slices showed that it could promote tumor tissue necrosis and decrease the density of blood vessels.With higher anti-tumor activity,19peptide has the potential to become a novel,potent anti-tumor agent.     

肿瘤抑素抗肿瘤相关肽的克隆及生物活性

为得到肿瘤抑素中具有直接抗肿瘤活性肽并检测其生物学活性,人工合成肿瘤抑素中185～2 0 3位氨基酸(19肽)所对应的核苷酸序列,将其连接到融合蛋白表达载体pTYB2中,酶切和测序鉴定后,转化到大肠杆菌BL 2 1(DE3)中诱导表达.表达的融合蛋白经几丁质亲和层析、二硫苏糖醇(DTT)的柱内还原,直接获得可溶性19肽.利用MTT法,细胞生长曲线,小鼠H2 2腹水型转移型肝癌实体瘤模型抑瘤实验并结合组织病理学切片,研究19肽的生物学活性.获得的19肽对B16小鼠黑色素瘤细胞、人SMMC 772 1肝癌细胞、人脐静脉内皮细胞的生长均具有抑制作用.小鼠H2 2腹水型肝癌抑瘤率达4 8 4 6 % .病理学切片显示,19肽可促使小鼠肿瘤组织坏死,血管数量减少.19肽具有较强的直接抗肿瘤活性,有可能成为肿瘤治疗的一种新的有前景的药物.     

Detection of the apoptosis of Jurkat cell using an electrorotation chip

The apoptosis of cells is one of the fields that attract increasing attention in biology today. Usually, the cells are treated with chemicals when detecting apoptosis. It is highly desired to detect apoptosis in a real-time basis. Apoptosis of Jurkat cells was studied using a real-time electrorotation chip. This chip allows the detection of the cell membrane capacitance changes during the course of apoptosis and therefore facilitates the analysis of apoptosis in a real-time basis without involving any chemical treatment. __________ Translated from Acta Biophysica Sinica, 2005, 21 (1) [译自: 生物物理学报, 2005,21(1)]     

Expression of hSef in various human tissues and cell lines

Sef is a transmembrane protein inhibiting FGF signaling. To determine the correlation of Sef with human diseases, Sef expression patterns were observed in cell lines and human cancer tissues. Western blot using anti-hSef antibodies showed that hSef, when expressed in Cos7 cells gave a molecular mass of 100 KD as compared with 80 KD in an in vitro translation assay suggesting occurrence of glycosylation at the potential N-linked glycosylation sites in the extracellular domain. Northern blot showed that hSef was mainly expressed in human kidney and testis. RT-PCR analysis showed a widely spread expression pattern in several cell lines. Immunohistochemical analysis revealed a high expression level of hSef in kidney, testis, and the corresponding carcinoma tissues. Results demonstrated that Sef might be up-regulated in the cancer tissues suggesting a possible role of Sef in pathophysiology of human diseases. __________ Translated from Chinese Journal of Biochemistry and Molecular Biology, 2005, 21 (2) [译自: 中国生物化学与分子生物学报, 2005,21(2)]     

Effects of Arg26 and Lys27 mutation on the bioactivity of HNTX-IV

Hainantoxin-IV (HNTX-IV) was isolated from the Chinese bird spider Ornithoctorcs hainana and identified as a novel antagonist of tetrodotoxin-sensitive (TTX-S) sodium channels. As revealed by the solution structure of HNTX-IV solved by two-dimensional nuclear magnetic resonance (2D-NMR), HNTX-IV adopts an inhibitor cystine knot motif. To check the role of basic residues during HNTX-IV’s interaction with TTX-S sodium channels, R26A and K27A mutants of HNTX-IV were constructed by solid-phase chemical synthesis. The synthesized peptides were purified and refolded under optimized oxidation conditions. Correct synthesis and folding were confirmed by MALDI-TOF mass spectrometry and NMR spectroscopy, respectively. Using the whole-cell patch-clamp technique, Lys27 but not Arg26 was identified as a key residue for HNTX-IV’s bioactivity against TTX-S sodium channels, because R26A-HNTX-IV showed slightly reduced activity and K27A-HNTX-IV showed almost no inhibition. Translated from Chinese Journal of Biochemistry and Molecular Biology, 2005, 21(4): 499–503 [译自: 中国生物化学与分子生物学报]     

Permeation mechanism of a two-state potassium channel

A two-state hopping model was proposed to study the permeation of ion channel. The Nernst equation in equilibrium and the Michaelis-Menten relation in steady state were derived from the two-state kinetic model. The current-voltage relationship obtained in the symmetrical solutions case was linear when the applied potential was less than 100 mV, which met Ohm’s law. The conductance-concentration relationship exhibited the saturation property. Moreover, the characteristic time reaching the steady state of the KcsA channel was also discussed. Translated from Acta Biophysica Sinica, 2005, 21(4): 289–294 [译自: 生物物理学报]     

Proteomics analysis of cerebral cortex in Wistar rats

To analyze the protein expression pattern of the cerebral cortex in Wistar rats using the proteomics approach, proteins were separated by two-dimensional gel electrophoresis, stained with Coomassie brilliant blue and digested with trypsin. Then, we analyzed the peptide section using a matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF-MS) and identified the protein by indexing special database (SwissProt) according to the finger printing of the peptide quality. Eighty-four protein spots were identified, including metabolic enzymes, skeleton proteins, heat shock proteins, antioxidant proteins, signaling proteins, proteasome related proteins, neuron and glial specific proteins and serum associated proteins. The result of this study enriches the database of the proteome in the cerebral cortex of rats and lays a foundation for further research of neurological disorders in rat models. __________ Translated from Acta Biophysica Sinica, 2007, 23 (1): 151–156 [译自: 生物物理学报]     

A simple and visualized method to screen for effective siRNAs by using green fluorescence protein (GFP) as a reporter

To screen for effective small interference RNA (siRNA), a simple and visualized method was developed using the green fluorescence protein (GFP) as a reporter. Candidate siRNAs targeting macrophage migration inhibition factor genes (MIF) were identified. By using the pEGFP-N3 vector, the MIF-GFP expression plasmid, pEGFP-MIF, was constructed with the same Kozak consensus translation initiation site and start code ATG for the MIF-EGFP coding sequence. Based on the siRNA expression vector pSilencer-4.1, 3 candidate MIF siRNA expression plasmids were constructed and co-transfected with the pEGFP-MIF into the HEK293 cells, respectively. The GFP expression in HEK293 cells could be viewed by fluorescence microscopy and the MIF mRNA expressions were determined by real-time quantitative PCR. The 3 candidate MIF siRNA expression plasmids were also co-transfected with the MIF expression plasmid into the HEK293 cells, respectively, and the MIF mRNA expressions were determined by real-time quantitative PCR. The results show that the down-regulated expression of the MIF mRNA was consistent with the GFP expression and the same effective MIF siRNAs were screened by using the pEGFP-MIF or MIF expression plasmid with the candidate MIF siRNAs expression plasmids. Therefore, by using the GFP as a reporter, a useful method was provided to screen for effective siRNAs targeting specific genes co-expressed with the GFP. This may be a good strategy for screening for effective siRNAs targeting different genes. __________ Translated from Chinese Journal of Biochemistry and Molecular Biology, 2007, 23(3): 231–235 [译自: 中国生物化学与分子生物学报]     

Technological exploration of BAC-FISH on mitotic chromosomes of maize

The rice BAC-DNA was used as probes and fluorescence in situ hybridization (FISH) was applied to the interphase and metaphase mitotic chromosomes of maize. To optimize the BAC-FISH technique, we respectively assayed the effect of several factors, including maize or rice genomic C _o t DNA used as blocking reagent of DNA, washing temperatures and FAD concentration in the washing buffer and in the hybrid solution. The results show that C _o t DNA of maize genome blocked the repetitive sequence of the rice BAC-DNA when the C _o t value was below 50. Meanwhile, it was necessary to adjust the C _o t value according to the different probes and their ratios. Decreasing the concentration of FAD in the hybridization mixtures, adjusting the washing rate after hybridization, and most especially, blocking the ricespecific repetitive sequences of BAC-DNA could improve the positive signals of BAC-FISH. __________ Translated from Chinese Journal of Biochemistry and Molecular Biology, 2007, 23(1): 80–84 [译自: 中国生物化学与分子生物学学报]     

Shape identification of electrocardiographic ST segment based on radial basis function neural network

The types of myocardial ischemia can be revealed by electrocardiographic (ECG) ST segment. Effective measurement and electrocardiographic analysis of ST as well as calculation of displacement and shape change of ST segment can help doctors diagnose coronary heart disease and myocardial ischemia, especially for asymptomatic myocardial ischemia. Therefore, it is a very important subject in clinical practice to measure and classify the ECG ST segment. In this paper, we introduce a computerized automatic identification method of the electrocardiographic ST segment shape with radial basis function neural network based on adaptive fuzzy system, which has a better effect than other methods. It helps to analyze the reason of the ST segment change and confirm the position of myocardial ischemia, and is useful for doctor diagnosis. Translated from Acta Biophysica Sinica, 2005, 21(6): 443–448 [译自: 生物物理学报]     

A cellular automata model for simulating fed-batch penicillin fermentation process

A cellular automata model to simulate penicillin fed-batch fermentation process (CAPFM) was established in this study, based on a morphologically structured dynamic penicillin production model, that is in turn based on the growth mechanism of penicillin producing microorganisms and the characteristics of penicillin fed-batch fermentation. CAPFM uses the three-dimensional cellular automata as a growth space, and a Moore-type neighborhood as the cellular neighborhood. The transition rules of CAPFM are designed based on mechanical and structural kinetic models of penicillin batch-fed fermentation processes. Every cell of CAPFM represents a single or specific number of penicillin producing microorganisms, and has various state. The simulation experimental results show that CAPFM replicates the evolutionary behavior of penicillin batch-fed fermentation processes described by the structured penicillin production kinetic model accordingly. __________ Translated from ACTA BIOPHYSICA, 2005, 21(2) [译自: 生物物理学报, 2005,21(2)]     

DNA duplex membrane effect for the electrochemical detection of single-base DNA mutations

Here we report a new method to detect DNA point mutations. The method is based on the formation and deformation of double-stranded DNA (dsDNA) membranes on a gold surface. It can encage reporter molecules between the gold surface and the double-stranded DNA or keep them away from the gold surface. In these systems, Fe(CN)₆ ³⁻ was used as the reporter. As the temperature increases, a sharp electrochemical signal change in the melting curve of wild-type dsDNA appears. At a special temperature, the method gives 100:1 selectivity for the perfect complement and single base mutation target. Thus, the system provides a simple and sensitive method to detect DNA point mutations without labeling targets. __________ Translated from Acta Biophysica Sinica 2005, 21 (2) [译 自: 生物物理学报, 2005,21(2)]     

Predicting siRNA activity based on back-propagation neural network

RNA interference (RNAi) is a phenomenon of gene silence induced by a double-stranded RNA (dsRNA) homologous to a target gene. RNAi can be used to identify the function of genes or to knock down the targeted genes. In RNAi technology, 19 bp double-stranded short interfering RNAs (siRNA) with characteristic 39 overhangs are usually used. The effects of siRNAs are quite varied due to the different choices in the sites of target mRNA. Moreover, there are many factors influencing siRNA activity and these factors are usually nonlinear. To find the motif features and the effect on siRNA activity, we carried out a feature extraction on some published experimental data and used these features to train a back-propagation neural network (BP NN). Then, we used the trained BP NN to predict siRNA activity. __________ Translated from Acta Biophysica Sinica, 2006, 22(6): 429–434 [译自: 生物物理学报]     

肿瘤抑素抗肿瘤相关肽对肝癌细胞增殖和凋亡的影响

肿瘤抑素抗肿瘤相关肽-19肽是由肿瘤抑素185~203位氨基酸组成, 具有直接抑制黑色素瘤细胞生长作用, 但其对肝癌细胞增殖和凋亡是否有影响, 对肝癌是否具有治疗作用还需进一步研究。本研究中采用基因工程技术将合成19肽基因与载体pTYB2重组后进行蛋白表达、纯化获得19肽。通过MTT法、生长曲线观察19肽对人肝癌细胞生长抑制作用; TUNEL标记法、流式细胞仪细胞周期检测法、透射电镜观察19肽对肝癌细胞凋亡的影响; 小鼠H22腹水型转移型肝癌实体瘤抑瘤实验证明其体内的抑瘤作用。MTT实验和生长曲线实验表明随着19肽浓度的增加肝癌细胞的存活率下降。在相同19肽浓度下, 随着作用时间延长存活细胞逐渐减少。电镜观察治疗组细胞出现明显凋亡, 流式细胞仪可检测到前G1峰, TUNEL标记法也证实治疗组可见明显的凋亡细胞, 体内19肽作用的小鼠H22腹水型转移型肝癌的抑瘤率达48.46%。可见, 肿瘤抑素19肽可抑制肝癌细胞生长, 促进肝癌细胞凋亡, 对肝癌具有一定的治疗作用。     

Cloning, expression and characterization of L-cysteine desulfhydrase gene from Pseudomonas sp. TS1138

L-cysteine desulfhydrase (CD) plays an important role in L-cysteine decomposition. To identify the CD gene in Pseudomonas sp. TS1138 and investigate its effect on the L-cysteine biosynthetic pathway, the CD gene was cloned from Pseudomonas sp. TS1138 by polymerase chain reaction (PCR) method. The nucleotide sequence of CD gene was determined to be 1,215 bp, and its homology with other sequences encoding CD was analyzed. Then the CD gene was subcloned into pET-21a(+) vector and expressed in Escherichia coli (E. coli) by isopropyl-β-D-thiogalactopyranoside (IPTG) inducement. The recombinant CD was purified by Ni-NTA His-Bind resin, and its activity was identified by the CD activity staining. The enzymatic properties of the recombinant CD were characterized and its critical role involved in the L-cysteine biosynthetic pathway was also discussed. __________ Translated from Microbiology, 2006, 33(4): 21–26 [译自: 微生物学通报]     

Cloning and expression of endo-β-glucanase II gene in Humicola insolens H31-3

Endo-β-glucanase II (EG II) gene cDNA was isolated from the fungus Humicola insolens H31-3 by RT-PCR. It was cloned into the expression vector pGAPZαA. The resultant recombinant plasmid was introduced into Pichia pastoris GS115 by electroporation after being linearized by BspHI digestion. The recombinant Pichia pastoris strain was obtained and SDS-PAGE showed that the molecular weight of the expression protein was about 55 kD.The cultivation condition and the characteristics of the recombinant EG II were also explored. __________ Translated from Microbiology, 2006, 33(6): 68273 [译自: 微生物学 通报]     

Fluorescence intensity studies of Triassic acritarchs from the Yanchang Formation in Ordos basin, northwestern China

Fluorescence properties of Early Cambrian acritarchs were investigated using Leica das Mikroskop (DM) microscopy with a mercury lamp. Well-preserved autoflurescence properties show a correlation between acritarchs morphology and the intensity of emitted fluorescence. In accordance with the fluorescence intensity of organic cell walls, two groups of microfossils were distinguished. Results of observation in this study, which are consistent with those of the previous foreign studies, are in good agreement with regular difference in autofluorescence intensity among palynomorphs reported by McPhilemy (1998). Spores and algae, including Botryococcus, have very bright fluorescence while acritarchs often show less intense fluorescence. Dark brown microfossils have been reworked, and have little or no fluorescence. __________ Translated from Acta Micropalaeontologica Sinica, 2006, 23(3): 309–312 [译自: 微体古生物学报]     

Cloning and expressing a recombinant human tissue inhibitor of metalloproteinase-2 (TIMP-2) in methylotrophic yeast Pichia pastoris and its characterizations

To obtain human tissue inhibitor of metalloproteinase-2 (TIMP-2) cDNA and the secretory expression of TIMP-2 gene in Pichia pastoris, we designed and synthesized a 618 base pairs artificial gene coding for the TIMP-2 with a computer-aided design method using a standard chemical synthesis technique, which was composed of frequently used codons in the highly expressed Pichia pastoris genes. Then the synthetic gene encoding TIMP-2 was checked by means of dideoxynucleotide sequencing. The verified gene of TIMP-2 was cloned to the Escherichia coli-yeast shuttle vector of pPIC9 to construct a recombinant plasmid pPIC9-T2. The plasmid was transformed into GS115 cells of the methylotrophic yeast, Pichia pastoris by electroporation, and we got the expression cell through phenotype selection and induction with methanol. Separation, purification, and bioactivity analysis of the expressed products were performed. __________ Translated from Microbiology, 2006, 33(1): 1–6 [译自: 微生物学通报]