Dichotomy of major bacterial phyla inferred from gene arrangement comparisons

A computer search for gene arrangements that are present in Gram-positive bacteria but are absent from Proteobacteria and vice versa was carried out. Four such arrangements were detected, based on which major bacterial phyla were divided into two groups; Thermotoga, Deinococcus-Thermus, Chloroflexi (green non-sulfur bacteria), and Fusobacteria, represent Gram-positive bacterial gene arrangements, while Aquifex, Spirochetes, Planctomycetes, Chlorobi (green sulfur bacteria), Bacteroides show Proteobacterial arrangements. The division is almost consistent with another partition of the major phyla based on the comparison of domain architectures of RNA polymerase subunits and sigma factor, suggesting a fundamental split of the major bacterial phyla at an early stage of bacterial evolution.     

Ecological innovations in the Cambrian and the origins of the crown group phyla

Simulation studies of the early origins of the modern phyla in the fossil record, and the rapid diversification that led to them, show that these are inevitable outcomes of rapid and long-lasting radiations. Recent advances in Cambrian stratigraphy have revealed a more precise picture of the early bilaterian radiation taking place during the earliest Terreneuvian Series, although several ambiguities remain. The early period is dominated by various tubes and a moderately diverse trace fossil record, with the classical ‘Tommotian’ small shelly biota beginning to appear some millions of years after the base of the Cambrian at ca 541 Ma. The body fossil record of the earliest period contains a few representatives of known groups, but most of the record is of uncertain affinity. Early trace fossils can be assigned to ecdysozoans, but deuterostome and even spiralian trace and body fossils are less clearly represented. One way of explaining the relative lack of clear spiralian fossils until about 536 Ma is to assign the various lowest Cambrian tubes to various stem-group lophotrochozoans, with the implication that the groundplan of the lophotrochozoans included a U-shaped gut and a sessile habit. The implication of this view would be that the vagrant lifestyle of annelids, nemerteans and molluscs would be independently derived from such a sessile ancestor, with potentially important implications for the homology of their sensory and nervous systems.     

The Effectiveness of the Protection of Embryos and Larvae within Egg Masses of the Gastropod Epheria turritaagainst Changes in Salinity and Desiccation

The effectiveness of the protection of embryos and larvae in egg masses from reduced salinity and desiccation was investigated in the gastropod Epheria turrita, which inhabits the intertidal and upper subtidal zones. Embryos and larvae developing inside egg masses were shown not to be protected against changes in environmental salinity. Viable larvae hatched from egg masses at a salinity of 24–26. However, if free-swimming veliger larvae, rather than egg masses, were transferred to water of reduced salinity, the range of salinity tolerated by the larvae was wider, and its lower limit was 18–20. Egg masses did not protect against desiccation either. A 3-h exposure of egg masses to drying resulted in larval mortality. Larvae hatched from egg masses did not rise to the surface and displayed an early tendency towards gregarious behavior, which apparently enhances their ability to settle on a proper substrate near parental populations.     

Primate origins and the evolution of angiosperms

Traditionally, the morphological traits of primates were assumed to be adaptations to an arboreal way of life. However, Cartmill [1972] pointed out that a number of morphological traits characteristic of primates are not found in many other arboreal mammals. He contends that orbital convergence and grasping extremities indicate that the initial divergence of primates involved visual predation on insects in the lower canopy and undergrowth of the tropical forest. However, recent research on nocturnal primates does not support the visually-oriented predation theory. Although insects were most likely important components of the diets of the earliest euprimates, it is argued here that visual predation was not the major impetus for the evolution of the adaptive traits of primates. Recent paleobotanical research has yielded evidence that a major evolutionary event occurred during the Eocene, involving the angiosperms and their dispersal agents. As a result of long-term diffuse coevolutionary interactions with flowering plants, modern primates, bats, and plant-feeding birds all first arose around the Paleocene-Eocene boundary and became the major seed dispersers of modern tropical flora during the Eocene. Thus, it is suggested here that the multitude of resources available on the terminal branches of the newly evolved angiosperm, rain forest trees led to the morphological adaptations of primates of modern aspect.     

食物条件对日本幼体存活与变态的影响

This paper studied the effects of different kind and density of baits and different starvation duration on Charybdis japonica larvae. The results showed that the preferable baits of zoaea-1 were Chaetoceros sp. and Isochrysis galbana,and their proper feeding density were 20×10⁴ cell·ml^-1.The preferable bait of the larvae after zoaea-1 was Artemia salina nauplius, and its proper feeding density for zoaea-2 and zoaea-3 was 2～3 ind·ml^-1.The point of no-return for zoaea-1 of Charybdis japonica was about 66 hours. 18 hours starvation did not affect the growth of the larvae, but their livability would be decreased, and their metamorphism would be suspended along with the starvation duration.     

Effect of metamorphosis on the major hemolymph proteins of the silkworm

During the metamorphosis of the silkworm, Bombyx mori, three major hemolymph proteins (MHPs) (molecular weights 17,000, 25,000, 27,000) were detected and found to be distributed in the hemolymph and in the tissues of several organs, such as the fat body, midgut, ovary, testis, and even eggs. The MHPs in eggs gradually decreased and disappeared during embryogenesis. The formation, distribution, and utilization of MHPs in tissues other than the gonad, however, were not affected by sex. Radioisotope experiments in vivo revealed that the MHPs were synthesized at an early period of the fifth larval instar. The synthesis of at least two of them occurred in the fat body. MHPs in the hemolymph entered the tissues at the onset of the larval-pupal transformation. On the basis of their appearance, distribution, and depletion, the MHPs may be classified as reserve proteins which are synthesized in the larval stage and utilized later in the developmental stages.     

Abundance and Distribution of Pelagic Larvae of Bivalves and Echinoderms in Busse Lagoon (Aniva Bay,Sakhalin Island)

The taxonomic composition and numbers of pelagic larvae of bivalves in Busse Lagoon and the contiguous areas of Aniva Bay (southern Sakhalin) were studied in 2000–2001. In comparison with 1973–1974, the total density of larvae increased 2–3 times, but their taxonomic composition changed and a redistribution of dominant species occurred. Numbers of bivalve larvae increased at the expense of larvae of Musculista senhousia, Crassostrea gigas, and species of the Tellinidae. In 2000–2001, larvae of Ruditapes philippinarum, Mya arenaria, Swiftopecten swifti, and some other species were encountered in plankton very rarely or were not found at all. The drastic decrease in the larval density of some bivalve species was caused by uncontrolled and nearly total harvesting of mollusks. Larval echinoderm numbers in the lagoon were not high in 2000–2001; larvae of the sea cucumber Apostichopus japonicus and the sea urchin Strongylocentrotus intermedius predominated.     

Differences in heat shock protein 70 expression during larval and early spat development in the Eastern oyster, Crassostrea virginica (Gmelin, 1791)

For a variety of species, changes in the expression of heat shock proteins (HSP) have been linked to key developmental changes, i.e., gametogenesis, embryogenesis, and metamorphosis. Many marine invertebrates are known to have a biphasic life cycle where pelagic larvae go through settlement and metamorphosis as they transition to the benthic life stage. A series of experiments were run to examine the expression of heat shock protein 70 (HSP 70) during larval and early spat (initial benthic phase) development in the Eastern oyster, Crassostrea virginica. In addition, the impact of thermal stress on HSP 70 expression during these early stages was studied. C. virginica larvae and spat expressed three HSP 70 isoforms, two constitutive, HSC 77 and HSC 72, and one inducible, HSP 69. We found differences in the expression of both the constitutive and inducible forms of HSP 70 among larval and early juvenile stages and in response to thermal stress. Low expression of HSP 69 during early larval and spat development may be associated with the susceptibility of these stages to environmental stress. Although developmental regulation of HSP 70 expression has been widely recognized, changes in its expression during settlement and metamorphosis of marine invertebrates are still unknown. The results of the current study demonstrated a reduction of HSP 70 expression during settlement and metamorphosis in the Eastern oyster, C. virginica.     

Moisture Stress Effects on Survival of Infective Haemonchus contortus Larvae

Water was evaporated from infective Haemonchus contortus larvae suspended in tap, distilled and triple-distilled water, and the nematodes were then exposed to 50% and 75% relative humidity (RH) at 20, 30, 40, and 50 C. Sample groups were rehydrated 4 hr daily in similar quality water, observed for motility, then returned to the same RH and temperature and re-evaporated. This was continued until all motility ceased. Longest survival was 80 days at 20 C and 75% RH. In all temperature and RH combinations control (non-desiccated) and desiccated larvae survived longer in distilled or triple-distilled water than in tap water.     

Meiofauna and the origins of the Metazoa*

Possible alternative habitats and life-styles of the original metazoan are considered. It is argued from the dominance of the benthic habitat in present-day groups that the original metazoan habitat was benthic rather than planktonic. Similarly, plesiomorphic metazoan taxa tend to be holobenthic rather than pelago-benthic. It is therefore probable that the early Metazoa were holobenthic. The concept of plesiohabitats and apohabitats in the evolution of taxa is presented. This leads to the proposition that the early metazoans were interstitial bionts of fine sand. Finally, the controversy concerning the aerobic or anaerobic origin of the Metazoa is considered. It is shown that competition theory predicts that plesiomorphic taxa are likely to remain in plesiohabitats. Diagrams showing the possible evolution of major taxa in relation to available habitats are presented. It is concluded that the earliest Metazoa could have evolved in anaerobic marine sand and that the early Plathelminthomorpha and Aschelminthes did so.     

食物条件对日本蟳幼体存活与变态的影响

This paper studied the effects of different kind and density of baits and different starvation duration on Charybdis japonica larvae. The results showed that the preferable baits of zoaea-1 were Chaetoceros sp. and Isochysisgalbana, and their proper feeding density were 20 × 10^4 cell· ml^-1. The preferable bait of the larvae after zoaea-1 was Artemia salina nauplius, and its proper feeding density for zoaea-2 and zoaea-3 was 2 - 3 ind· ml^-1. The point of no-return for zoaea-1 of Charybdisjapoptica was about 66 hours. 18 hours starvation did not affect the growth of the larvae, but their livability would be decreased, and their metamorphism would be suspended along with the starvation duration.     

Origin of the phyla and cancer

Multicelled animals with specialized cells (metazoans) emerged shortly after rising oxygen levels in the seas permitted formation of collagen-family molecules. Certain unicells then formed 3-D clusters, some with disc- or ball-like shapes that happened to resemble blastulas. These became unstable beyond a certain size due to contrasting metabolic styles among their component cells. For whereas cells near their exteriors could employ oxygen respiration, cells closer to the oxygen-deprived interiors were obliged to rely on anaerobic metabolism (fermentation), a process that produces waste molecules that, if retained within cells, cause disproportionate cell growth. Unstable blastula-like forms would either disintegrate or reorganize along surfaces of relative weakness in a process that may be likened to gastrulation. Initial cell-differentiation depended on the quantity and diversity of retained fermentation products and on the pumping of molecules from cell to cell by the consequent electro-chemical gradients. In subsequent contexts, oxygen deprivation, fermentation, excess cell growth, and disintegration or reorganization of tissues produce cancer.     

Tracing the geographic origins of major avocado cultivars

It has been difficult to infer the genetic history of avocado breeding, owing to the role of hybridization in the origin of contemporary avocado cultivars. To address this difficulty, we used the model-based clustering program, STRUCTURE, and nucleotide polymorphism in 5960 bp of sequence from 4 nuclear loci to examine population structure in 21 wild avocado accessions. The origins of 33 cultivars were inferred relative to the wild sample. Nucleotide sequence diversity in domesticated avocados ranged between 80% and 90% of that observed for the same loci in wild avocado, depending on the diversity statistic used for comparison. Substantial genetic differentiation among 3 geographic groups of wild germplasm corresponded to the classically defined horticultural races of avocado. Previously undetected genetic differentiation was revealed in wild populations from Central Mexico, where 2 subpopulations were distinguished based on elevation and latitude.     

Larvae of two pleuronectiforms, Poecilopsetta plinthus (Poecilopsettidae) and Parabothus coarctatus (Bothidae), from southern Japan

Pelagic larvae of two pleuronectiforms, Poecilopsetta plinthus (Poecilopsettidae) and Parabothus coarctatus (Bothidae), are described and illustrated based on specimens collected off Tosa Bay, southern Japan. Postflexion larvae (8.2–11.9 mm BL) of Poecilopsetta plinthus are characteristic in having a series of melanophore patches along the dorsal and anal fin bases and the inner margins of the pterygiophore zones, and linear myoseptal pigmentation also along the inner margins of the latter. Preflexion and flexion larvae (5.0–6.3 mm BL) of Parabothus coarctatus are distinctive in having the dorsal fin origin located level with the dorsal margin of the eye and seven elongated rays in the anterior part of that fin. Received: November 18, 2000 / Revised: May 1, 2001 / Accepted: June 13, 2001     

Tool behavior and the origins of laterality

The cerebral cortex of modern humans is exceptional in that it is characterized by certain functional asymmetries for which no clear homologue is known in the non-human primates. These asymmetries consist at least in part in the presence in the left cerebral hemisphere of certain mechanisms which mediate language as well as skilled manual activity. Right-handedness is the most obvious overt manifestation of this cerebral asymmetry. It is argued in this paper that the lateralized representation of these mechanisms is an evolutionary consequence of the requirement for asymmetric employment of the forelimbs in the making and using of tools during hominid evolution. The adaptiveness of such an asymmetric arrangement is shown to follow from a few assumptions pertaining to brain organization and evolution. The colateralization of language mechanisms in modern humans to the left hemisphere is held to be a consequence of the coupling of these linguistic mechanisms to the motoric mechanisms already lateralized to the left hemisphere at an earlier point in hominid evolution. Finally, it is argued that this explanation of the evolution of laterality is more parsimonious in relation to known facts about human evolution than competing hypotheses.     

Gliding hexapods and the origins of insect aerial behaviour

Directed aerial descent (i.e. gliding and manoeuvring) may be an important stage in the evolution of winged flight. Although hypothesized to occur in ancestrally wingless insects, such behaviour is unexplored in extant basal hexapods, but has recently been described in arboreal ants. Here we show that tropical arboreal bristletails (Archaeognatha) direct their horizontal trajectories to tree trunks in approximately 90 per cent of falls. Experimental manipulation of the median caudal filament significantly reduced both success rate (per cent of individuals landing on a tree trunk) and performance (glide index) versus controls. The existence of aerial control in the ancestrally wingless bristletails, and its habitat association with an arboreal lifestyle, are consistent with the hypothesis of a terrestrial origin for winged flight in insects.     

Eukaryotic origins

The origin of the eukaryotes is a fundamental scientific question that for over 30 years has generated a spirited debate between the competing Archaea (or three domains) tree and the eocyte tree. As eukaryotes ourselves, humans have a personal interest in our origins. Eukaryotes contain their defining organelle, the nucleus, after which they are named. They have a complex evolutionary history, over time acquiring multiple organelles, including mitochondria, chloroplasts, smooth and rough endoplasmic reticula, and other organelles all of which may hint at their origins. It is the evolutionary history of the nucleus and their other organelles that have intrigued molecular evolutionists, myself included, for the past 30 years and which continues to hold our interest as increasingly compelling evidence favours the eocyte tree. As with any orthodoxy, it takes time to embrace new concepts and techniques.