The molecular basis of quantitative genetic variation in natural populations

DNA markers allow us to study quantitative trait loci (QTL) - the genes that control adaptation and quantitative variation. Experiments can map the genes responsible for quantitative variation and address the evolutionary and ecological significance of this variation. Recent studies suggest that major genes segregate within and among natural populations. It is now feasible to study the genes that cause morphological variation, life history trade-offs, heterosis and speciation. These methods can determine the role of epistasis and genotype-by-environment interaction in maintaining genetic variation. QTL mapping is an important tool used to address evolutionary and ecological questions of long-standing interest.     

Intraspecific variation in Eucalyptus secondary metabolites determines food intake by folivorous marsupials

Traditional approaches to the question of the effects of plant secondary metabolites on the feeding choices of folivores of Eucalyptus have focused on the tree species level, although numerous field studies of foraging behaviour have identified selection at the level of the individual trees. Attempts to relate these decisions to deterrency resulting from secondary leaf chemistry have been inconclusive because assays used have focused on broad groups of compounds such as “total” phenolics. In this study we have conducted no-choice feeding trials with two arboreal mammalian folivores, the common ringtail possum (Pseudocheirus peregrinus) and the koala (Phascolarctos cinereus), to measure deterrency of individual trees of two species of Eucalyptus, E. ovata and E. viminalis. Average daily intakes of E. ovata foliage by common ringtail possums ranged from 2.5 to 50 g kg^−0.75 body mass. Koala intakes of foliage from the same individual trees ranged from 22.4 to 36.3 g kg^−0.75 body mass. When fed foliage from different individual E. viminalis trees, common ringtail possums ate between 1.26 and 6.28 g kg^−0.75 body mass while koalas ate from 14.3 to 45.9 g kg^−0.75 body mass. Correlative analyses showed no relationships between feeding and several measures of nutritional quality, nor with total phenolics or condensed tannins. They did, however, identify two groups of plant secondary metabolites that may cause deterrency: terpenes, and a defined group of phenolic compounds, the diformylphloroglucinols (DFPs). Further bioassay experiments with common ringtail possums showed that only the DFPs could cause the effects seen with the foliage experiments at concentrations similar to those found in the leaves. We argue that, when in sufficiently high concentrations, DFPs determine the level of food intake by these animals irrespective of other questions of nutritional quality of the leaves. Received: 20 October 1997 / Accepted: 23 March 1998     

Genetic variation in resistance of Eucalyptus globulus to marsupial browsers

The evolution of plant defensive traits in response to selection pressures imposed by herbivores is central to co-evolutionary theory. To demonstrate the role of herbivores as selective agents on plant resistance there must be variability in plant resistance to herbivores within a plant population. This variability must be under genetic control, and the variability in plant resistant traits and consequently herbivore damage to plants must reflect variability in plant fitness. We used a common eucalypt species, Eucalyptus globulus, and two major mammalian herbivores, the common brushtail possum (Trichosurus vulpecula) and the red-bellied pademelon (Thylogale billardierii), as a system to investigate intraspecific variation in plant resistance to mammalian herbivores and to investigate if this variation has a genetic basis. We measured mammalian browsing damage on 2,302 individual trees of E. globulus, from 563 families derived from range-wide native stand seed collections of known pedigree and grown in a common environment field trial. Using a selection of trees from the field trial we then conducted a feeding trial with captive herbivores to assess if the genetic variation in plant resistance in the field was reflected in feeding preferences of captive animals, as measured by relative intake. Results from the field trial showed significant genetic variation in plant resistance amongst races, localities and amongst different families. These results were consolidated in the captive trial with similar trends in genetic variation among E. globulus localities. Dry matter intake of foliage by Trichosurus vulpecula was consistently greater than that by Thylogale billardierii; however, the intraspecific preferences of the two herbivores were significantly correlated.     

Diagnosis of nitrogen deficiency and toxicity of Eucalyptus globulus seedlings by foliar analysis

The relationship between shoot growth and foliar nitrogen (N) in E. globulus seedlings was studied in the glasshouse to determine standard values for N deficiency and toxicity diagnosis. Seedlings were grown for 9 weeks in yellow sand, at 10 rates of N, applied as ammonium sulphate, calcium nitrate or ammonium nitrate. Shoot dry weight (DW) increased linearly with N rate for all forms of N in the deficiency range. Seedlings continued to respond to higher rates of ammonium and ammonium nitrate than to nitrate. Maximum shoot DW for nitrate fed plants and ammonium nitrate fed plants were 51% and 84% respectively of ammonium fed plants. Total N concentration in the youngest fully expanded leaf (YFEL) ranged from 1.0% to 3.3% in deficient and adequate plants. The critical N concentration for deficiency diagnosis (corresponding to 90% maximum yield) in the YFEL, determined from these growth response curves averaged over all N forms, was 2.6% N. For ammonium nitrate fed plants, total N concentration in the YFEL for the severely deficient, deficient, adequate, and toxic ranges were <1.4%, 1.4–2.5%, 2.6–3.5%, > 4.3%. High total N concentrations were associated with growth depression and toxicity symptoms, which differed with N form. For nitrate fed plants, a total N concentration above 3.3% in the YFEL was associated with severe growth depression, and leaf tip necrosis. The adequate concentration range for ammonium nitrate was similar to values found on a field trial with 7 month old E. globulus trees grown on an exforest site.     

A chemical perspective on the evolution of variation in Eucalyptus globulus

It is becoming increasingly easy to generate genotypic data but much harder to gather an equivalent amount of phenotypic information, particularly for chemical traits. In this study of Eucalyptus globulus ssp. globulus, we measured about 60 chemical leaf traits of trees growing in a common garden to address the following questions: (1) how much variation is there between geographic regions, populations within regions and within populations? (2) How do chemical traits vary over the species’ geographic range? (3) If so, does E. globulus ssp. globulus exhibit distinct chemotypes – plants that are morphologically similar but which differ chemically? (4) Are the affinities between E. globulus ssp. globulus and closely related subspecies apparent in the chemical variation? Variation among trees within populations contributed most variation in leaf chemistry followed by variation between geographic regions. For many traits, variation among populations within proposed races and variation among proposed races within geographic regions explained little of the total variation. There was a cline in the concentration of secondary chemicals with the lowest concentrations in Tasmanian populations and the highest in those from eastern Victoria, with intermediate concentrations in populations from Bass Strait Islands. We identified three chemotypes, characterised by specific terpenes and formylated phloroglucinol compounds. The frequency of occurrence of these chemotypes showed a geographic pattern also, with “chemotype 1” predominating in Tasmania, while “chemotypes 2 and 3” occurred at highest frequency in eastern Victoria. We suggest that the chemotypes reflect introgression between E. globulus ssp. globulus and the three closely related subspecies – E. globulus ssp. bicostata, E. globulus ssp. maidenii and E. globulus ssp. pseudoglobulus. Although the formation of land-bridges with fluctuating sea levels has no doubt shaped the evolutionary history of all four subspecies, we propose that the migratory swift parrot (Lathamus discolor), an important pollinator and a species closely associated with E. globulus, has helped shape the evolution of the four tree subspecies.     

Genetic variation in the susceptibility of Eucalyptus globulus to drought damage

Genetic variation in drought damage in Eucalyptus globulus was studied in a sublined trial series across four neighbouring sites in Western Australia linked by ten common families. The trials included approximately 400 open-pollinated families, encompassing 51 native stand collection localities and 19 subraces from throughout the geographic range of the species. Data were analysed using mixed models, with spatial analysis used to better identify genetic effects. Significant subrace differences in drought damage were detected, with both broad-scale, regional and localised clines evident. The quantitative genetic differentiation between subraces as measured by Q _ST (0.39?±?0.091) was significantly greater than the F _ST for neutral marker expectations and consistent with diversifying selection shaping the patterns of subrace divergence in drought susceptibility. This conclusion is supported by the significant association of subrace drought susceptibility with bioclimatic parameters, particularly those associated with temperature seasonality. Less drought damage was observed in subraces originating from areas with more temperature seasonality, but also less radiation and rainfall seasonality, less winter rainfall, higher radiation and higher temperatures in the warmest month. Significant additive genetic variation in drought damage was detected within subraces, with narrow-sense heritabilities ranging from 0.14 to 0.20. We argue that spatial genetic variation in drought susceptibility of E. globulus has been shaped by natural selection acting at multiple scales and discuss opportunities for exploiting this genetic variation in breeding and deployment programs.     

Within-tree variation in cambial anatomy and xylem cell differentiation in Eucalyptus globulus

Summary Microscopic examination of the vascular cambium of Eucalyptus globulus, from four trees, at nine height levels, revealed a non-storied cambial structure with both ray and fusiform initials. Average fusiform initial length increased from 443 m at 70% of tree height from the base to a maximum of 484 m at 10% of tree height. At 2.5% of tree height average fusiform initial length sharply declined to 438 m. A strong positive correlation (r = 0.757, df = 7, P <0.05) existed between average fusiform initial length and average fibre length at each height, giving quantitative support to the notion that variation in fusiform initial length is an important mechanism influencing fibre length in hardwoods. However, 62% of the longitudinal variation in average fibre length was explained by the extent of elongation during differentiation, which increased linearly down the stem. At 70% of tree height, the average length of fibres was 1.84 times that of the fusiform initials, compared to 2.11 times at 2.5% of tree height. Concomitant with this longitudinal gradient of elongation was a gradient of increasing tangential area of the cambium occupied by cambial rays. This was accounted for by dimensional increases in the ray initial cells with decreasing height. Possible mechanisms that regulate the elongation of developing fibres and the proportion of cambial rays are discussed.     

Somatic embryogenesis in Eucalyptus globulus

Somatic embryos were obtained from 1% of cotyledon pieces and hypocotyls of mature embryos of Eucalyptus globulus Labill. cultured on media containing a high concentration of picloram or IBA. 2,4-D and other synthetic auxins did not yield somatic embryos or embryogenic callus. Somatic embryos arose indirectly via callus, being visible after four months, and directly, where little callus or adventitious root initiation occurred. Somatic embryos, formed directly from explants, were visible within five weeks. Various structural abnormalities of somatic embryos were observed, especially after induction on media containing picloram. Only two out of fifteen somatic embryos showed hypocotyl and radical elongation, but plantlets did not develop further.     

Physiological basis of spacing effects on tree growth and form in Eucalyptus globulus

We examine the effects of spacing and layout on the growth and form of 3- to 4-year-old Eucalyptus globulus in a farm forestry context. Four planting layouts were chosen. These represented the range commonly in use in farm forestry: block plantings (2Ǹ m), triple rows (2Ǹ m) at 10-m intervals, single rows (2᎒ m) and isolated trees (10᎒ m). The physiological significance of key results is interpreted in terms of changes in the parameters of a simple plantation growth model. Under conditions where levels of direct light are high, for example during summer, block-planted trees intercepted only 38% of the light intercepted by isolated trees. On a stand basis, however, the combination of incident radiation and ground coverage declined with lower stand densities. While stand leaf area index declined from around 6 to 1 with increased spacing, individual tree leaf areas rose from around 50 m² in block plantings to 150 m² in isolated trees. The proportion of above-ground biomass found in stems declined with increasing spacing as the mass in foliage and branches increased. Stems accounted for 65% of above-ground biomass in block-planted trees but only 35% in isolated trees. The contributions of leaves and branches correspondingly rose from 19% to 35% and from 16% to 29%, respectively. Changes in biomass distribution were accompanied by increasing branch number, branch thickness, flatter branch angles and the longer retention of lower branches with greater spacing. These changes have implications for the merchantability of the timber. The efficiency of above-ground radiation conversion was constant at 0.67 g MJ^-1 irrespective of spacing. We estimated that foliar maintenance respiration (R_m) accounted for about 90% of above-ground R_m. On a stand basis R_m costs block plantings 23.90 t DM ha^-1 year^-1 (50% annual above-ground photosynthetic production) compared with 6.22 t DM ha^-1 year^-1 (40% annual above-ground photosynthetic production) in stands of isolated trees.     

Detection and stability of quantitative trait loci (QTL) in Eucalyptus globulus

Eucalyptus globulus Labill. ssp. globulus is an important tree species for the pulp and paper industry, and several breeding programmes throughout the world are striving to improve key traits such as growth and wood density. This study aimed to detect quantitative trait loci (QTL) for growth, wood density, relative bark thickness and early flowering in a single full-sib E. globulus family grown across seven sites. Growth was measured a number of times over a 6-year period, enabling temporal stability of growth QTL to be studied. Ten putative QTL (LOD > 2.0) were detected in the single family, which was of moderate size. Based on permutations of the trait data, six of these QTL were significant at the experimentwise significance level of 0.1 for at least one of the four models implemented in analysis to remove site effects. For wood density, two putative QTL explained 20% of the variance for the trait, indicating that a small number of QTL might explain a reasonable proportion of the trait variance. One of these QTL was found to be independent of QTL for growth whereas the second QTL co-segregated with a QTL for relative incremental growth. The marker nearest to this QTL was associated with fast growth but low wood density. A putative growth QTL at year 6 was found to be relatively stable across ages. In addition, it was found that residuals from models based on measurements from across all families across all sites in the trial detected QTL with greater experimentwise significance.     

Development of SCAR molecular markers for early and late differentiation of Eucalyptus globulus ssp globulus from E. globulus ssp maidenii

The genus Eucalyptus includes over 700 species, some of which are the most widely planted hardwoods worldwide. Each species and subspecies of Eucalyptus present different characteristics regarding its wood quality and yield. This fact makes it very important to work with known species/subspecies so as to optimize handling and conservation of forest resources. Some of them are morphologically very similar, making it difficult to differentiate by simple observation. This is the case with Euclyptus globulus ssp globulus and E. globulus ssp maidenii, which can only be distinguished in the adult tree. These issues can be avoided using well-characterized seeds. This can be quite expensive, especially for the small growers. An alternative approach is to develop simple methods for the differentiation of the two subspecies. In this work, we develop a quick method, based on SCAR molecular markers derived from RAPD molecular markers, for the differentiation of the subspecies of E. globulus, in particular E. globulus ssp globulus and E. globulus ssp maidenii.     

Genetic control of flowering time in Eucalyptus globulus ssp. globulus

Understanding the factors affecting variation in phenology within a species is important as flowering time constitutes one of the major barriers to gene flow. We studied the genetic and environmental control of flower initiation and anthesis time in E. globulus ssp. globulus. For 5 years, flower initiation and anthesis were monitored in a seed orchard containing clones of 63 genotypes from four different regions of the species’ natural distribution. Anthesis occurred over a long period each year, spanning as much as 9 months in 2008. This variation was under strong genetic control with little genotype by year interaction (broad-sense heritability, Ĥ ² = 0.78 ± 0.04). There were highly significant differences among regions; anthesis occurred earlier for Furneaux and Tasmania than Strzelecki and Otways each year. Surprisingly though, there was little variation in flower initiation time between regions and genotypes, and this was under weak genetic control (Ĥ ² = 0.06 ± 0.05). The average anthesis time in the orchard varied from year to year, and there was evidence that heat sum was a major driver of this environmental variation. Anthesis time is controlled by both genetic and environmental factors, with the responses to each being predictable to some extent, and unrelated to the timing of flower initiation.     

Nitrogen-Fixing Bacteria in Eucalyptus globulus Plantations

Eucalypt cultivation is an important economic activity worldwide. In Portugal, Eucalyptus globulus plantations account for one-third of the total forested area. The nutritional requirements of this crop have been well studied, and nitrogen (N) is one of the most important elements required for vegetal growth. N dynamics in soils are influenced by microorganisms, such as diazotrophic bacteria (DB) that are responsible for biological nitrogen fixation (BNF), so the aim of this study was to evaluate and identity the main groups of DB in E. globulus plantations. Samples of soil and root systems were collected in winter and summer from three different Portuguese regions (Penafiel, Gavião and Odemira). We observed that DB communities were affected by season, N fertilization and moisture. Furthermore Bradyrhizobium and Burkholderia were the most prevalent genera in these three regions. This is the first study describing the dynamic of these bacteria in E. globulus plantations, and these data will likely contribute to a better understanding of the nutritional requirements of eucalypt cultivation and associated organic matter turnover.     

Reduction of generation time in Eucalyptus globulus

The plant growth retardant paclobutrazol was applied by foliar spray to seedlings of Eucalyptus globulus (Labill.) to determine its effects on reproductive activity. It was shown to induce flowering in vegetatively juvenile seedlings and increase reproductive activity in vegetatively adult material. The former case represented a 50% (three year) reduction in generation time for commercial seedlings. Paclobutrazol treatment did not appear to have a negative effect on any aspect of reproductive development, germination of new seed, or early seedling growth, while having a distinct positive effect on reproductive output. This suggests that paclobutrazol may be an effective tool enabling tree breeders to reduce generation time and increase reproductive output in E. globulus. Foliar spraying during autumn was shown to be an effective means and timing of paclobutrazol application, with results evident in the following flowering season. Considerable persistence of paclobutrazol effects was noted in the second season after application. Pot size and growth temperatures also play roles in determining the extent of new reproductive activity each season in E. globulus seedlings.     

Maternal inheritance of mitochondria in Eucalyptus globulus

It is important to verify mitochondrial inheritance in plant species in which mitochondrial DNA (mtDNA) will be used as a source of molecular markers. We used a polymerase chain reaction (PCR)/restriction fragment length polymorphism (RFLP) approach to amplify mitochondrial introns from subunits 1, 4, 5, and 7 of NADH dehydrogenase (nad) and cytochrome oxidase subunit II (cox2) in Eucalyptus globulus. PCR fragments were then either sequenced or cut with restriction enzymes to reveal polymorphism. Sequencing cox2 showed that eucalypts lack the intron between exons 1 and 2. One polymorphism was found in intron 2-3 of nad7 following restriction digests with HphI. Fifty-four F1 progeny from seven families with parents distinguishable in their mitochondrial nad7 were screened to show that mitochondria were maternally inherited in E. globulus. These results constitute the first report of mitochondrial inheritance in the family Myrtaceae.     

Adventitious bud induction in Eucalyptus globulus Labill

Summary Adventitious buds and shoots of Eucalyptus globulus Labill. (Tasmanian Bluegum) have been regenerated from cotyledons and hypocotyls from mature embryos and seedlings. Adventitious buds, were induced at high frequency with 0.05 μM thidiazuron in combination with 0.2 μM 2,4-dichlorophenoxyacetic acid or 5 μM α-naphthaleneacetic acid. Culture of explants in the dark inhibited bud induction, but up to 86% of cotyledons, longitudinally split just prior to culture, produced adventitious buds, in the light. Development of buds into shoots occurred only at low frequency, after transfer to media containing N⁶-benzylaminopurine.     

Effects of flooding on Eucalyptus camaldulensis and Eucalyptus globulus seedlings

Summary Flooding for up to 40 days induced morphological changes and reduced growth of 6-week-old Eucalyptus camaldulensis and Eucalyptus globulus seedlings. However, the specific responses to flooding varied markedly between these species and with duration of flooding. Both species produced abundant adventitious roots that originated near the tap root and original lateral roots, but only E. camaldulensis produced adventitious roots on submerged portions of the stem. Flooding induced leaf epinasty and reduced total dry weight increment of seedling of both species but growth of E. globulus was reduced more. In both species dry weight increment of shoots was reduced more than dry weight increment of roots, reflecting compensatory growth of adventitious roots. Adaptation to flooding appeared to be greater in E. camaldulensis than in E. globulus. the importance of formation of adventitious roots in flooding tolerance is emphasized.Research supported by the College of Agricultural and Life Sciences, University of Wisconsin, Madison; CEPEC (Cacao Research Center), Bahia, Brazil; and BMBRAPA (Brazilian Research Institute), Brasilia, Brazil