Characterization of tidal pool algae in the Mexican Tropical Pacific coast

Tidal pools in the Mexican Tropical Pacific coast have received relatively little attention in spite of their considerable richness in species and wide distribution in the region.This paper presents the first characterization of the algal flora of this region. It analyzes the number and composition of species of the tidal pools of six localities with regard to geographical distribution and its seasonal variations as well as tidal level. 97 species are reported, 25 Chlorophyta, 23 Phaeophyta, 34 Rhodophyta and 15 Cyanophyta.Of that total of species, 63% were found in one locality, 23.7% in two, 11.3% in three and 1 % in 4 or 5 localities. Not one species was common to all of the pools.The highest number of species was found on pools of the middle and low intertidal where the Chlorophyta, Rhodophyta and Phaeophyta were the most abundant algae. Cyanophyta was more common in the supralittoral and high intertidal pools.     

Screening for anticoagulant activity in marine algae from the Northwest Mexican Pacific coast

Disorders in blood coagulation can lead to an increased risk of bleeding (hemorrhage) or clotting (thrombosis). These illnesses have increased over the last decades and no useful new substances have been discovered to remediate them. In search of new compounds from marine natural resources, macroalgae from the Northwest Mexican Pacific coast were investigated in order to detect anticoagulant activity. Egregia menziesii, Ulva neumatoidea, Porphyra perforata, Silvetia compressa, and Codium fragile were collected from Ensenada coasts. Collected materials were cleaned, dried, milled, and stored until use. Proximate chemical composition and sulfate content were determined in dried powder. Hot and cold aqueous extracts were obtained from the dried algae in order to isolate polysaccharides and similar compounds. Methanol-soluble compounds were separated by means of Soxhlet extraction. Organic and aqueous extracts were screened for anticoagulant activity in both intrinsic and extrinsic pathways of clot formation. Clotting activity was studied by standardized plasma coagulation tests (activated partial thromboplastin time (aPTT) and prothrombin time (PT)). Heparin, a sulfated glycosaminoglycan widely used in anticoagulant therapy, was used as reference. Effects were defined either as aPTT index (Sample aPTT/Control aPTT ratio) or PT index (Sample PT/Control PT ratio). Some of the fractions showed anticoagulant activity over intrinsic pathways, whereas they were found to be coagulants on the extrinsic pathway. The highest aPTT index was 1.8 for U. nematoidea (1 μg mL⁻¹). Hot aqueous extracts from E. menziesii (1 μg mL⁻¹) showed the highest potency, with an aPTT index of 1.4. Sulfate content and anticoagulant activity were not correlated.     

Coral-associated bacterial assemblages: current knowledge and the potential for climate-driven impacts

The importance of associations between microorganisms and their invertebrate hosts is becoming increasingly apparent. An emerging field, driven by the necessity to understand the microbial relationships that both maximize coral health and cause coral disease, is the study of coral-bacteria interactions. In this article, we review our current understanding of the diversity, specificity, development, and functions of coral-associated bacteria. We also summarize what is known regarding the role of coral microbiota in the health and disease of coral. We conduct a meta-analysis to determine whether the presence of unique taxa correlates with the state of coral health (i.e. healthy, diseased or bleached), as well as whether coral reef habitats harbor clusters of distinct taxa. We find that healthy and bleached corals harbor similar dominant taxa, although bleached corals had higher proportions of Vibrio and Acidobacteria. Diseased corals generally had more Rhodobacter, Clostridia, and Cyanobacteria sequences, and fewer Oceanospirillum sequences. We caution, however, that while 16S rRNA is useful for microbial species identification, it is a poor predictor of habitat or lifestyle, and care should be taken in interpretation of 16S rRNA surveys to identify potential pathogens amongst complex coral-microbial assemblages. Finally, we highlight evidence that coral-bacterial assemblages could be sensitive to the effects of climatic change. We suggest that the relationship between coral and their bacterial associates represents a valuable model that can be applied to the broader discipline of invertebrate-microbial interactions.     

Influence of the coral reef assemblages on the spatial distribution of echinoderms in a gradient of human impacts along the tropical Mexican Pacific

Fourteen species of echinoderms and their relationships to the benthic structure of the coral reefs were assessed at 27 sites—with different levels of human disturbances—along the coast of the Mexican Central Pacific. Diadema mexicanum and Phataria unifascialis were the most abundant species. The spatial variation of the echinoderm assemblages showed that D. mexicanum, Eucidaris thouarsii, P. unifascialis, Centrostephanus coronatus, Toxopneustes roseus, Holothuria fuscocinerea, Cucumaria flamma, and Echinometra vanbrunti accounted for the dissimilarities among the sites. The spatial variation among the sites was mainly explained by the cover of the hard corals (Porites, Pocillopora, Pavona, Psammocora), different macroalgae species (turf, encrusting calcareous algae, articulated calcareous algae, fleshy macroalgae), sponges, bryozoans, rocky, coral rubble, sand, soft corals (hydrocorals and octocorals), Tubastrea coccinea coral, Balanus spp., and water depth. The coverage of Porites, Pavona, and Pocillopora corals, soft coral, rock, and Balanos shows a positive relationship with the sampling sites included within the natural protected area with low human disturbances. Contrary, fleshy macroalgae, sponges, and soft coral show a positive relationship with higher disturbance sites. The results presented here show the importance of protecting the structural heterogeneity of coral reef habitats because it is a significant factor for the distribution of echinoderm species and can contribute to the design of conservation programs for the coral reef ecosystem.     

A new genus and species of Tullbergiidae (Collembola) from the Pacific Mexican coast

The new genus Mexicaphorura, and its type species Mexicaphorura guerrerensissp. n. are described from marine littoral sand. The new genus is similar to Sensilatullbergia Thibaud & Ndiaye, 2006 in having very big sensilla on sensorial organ of antennal segment III, but of different shape, the kind of postantennal organ, with simple vesicles in Mexicaphorura versus composed vesicles in Sensilatullbergia and formulae of the pseudocelli.     

Source and stability of soil carbon in mangrove and freshwater wetlands of the Mexican Pacific coast

Wetlands can store large quantities of carbon (C) and are considered key sites for C sequestration. However, the C sequestration potential of wetlands is spatially and temporally variable, and depends on processes associated with C production, preservation and export. In this study, we assess the soil C sources and processes responsible for C sequestration of riverine wetlands (mangroves, peat swamp forest and marsh) of La Encrucijada Biosphere Reserve (LEBR, Mexican south Pacific coast). We analysed soil C and nitrogen (N) concentrations and isotopes (δ¹³C and δ¹⁵N) from cores dated from the last century. We compared a range of mangrove forests in different geomorphological settings (upriver and downriver) and across a gradient from fringe to interior forests. Sources and processes related to C storage differ greatly among riverine wetlands of the Reserve. In the peat swamp forest and marsh, the soil C experienced large changes in the past century, probably due to soil decomposition, changes in plant community composition, and/or changes in C sources. In the mangroves, the dominant process for C accumulation was the burial of in situ production. The C buried in mangroves has changed little in the past 100 years, suggesting that production has been fairly constant and/or that decomposition rates in the soil are slow. Mangrove forests of LEBR, regardless of geomorphological setting, can preserve very uniform soil N and C for a century or more, consistent with efficient C storage.     

Dynamics of habitat distribution in breeding mallards: assessing the applicability of current habitat selection models

The applicability of ideal free, ideal despotic and ideal preemptive habitat selection models to explain dynamics of habitat distribution of breeding mallards ( Anas platyrhynchos ) was explored. Data from 35 lakes studied between 1985 and 2000 were used to examine overall habitat distribution of breeding pairs, breeding success in different habitats, within-year order of habitat occupation, and density dependence of habitat distribution and breeding success. Two habitat types, rich and poor, were defined based on the structure and luxuriance of shore vegetation; each lake belonged to one or the other of the habitat types. Breeding pairs used the rich habitat more than expected, breeding density also being higher there than in the poor habitat. Both average brood density and breeding success were higher in the rich habitat than in the poor. Breeding success was not density dependent, neither when analysed separately for the habitat types, nor in the study area in general. Within season, arriving mallard pairs did not occupy rich lakes earlier than poor lakes. An isodar analysis based on between-year variation of the breeding density in rich and poor habitats revealed that habitat distribution of breeding pairs was not density dependent. By contrast, density in the rich habitat increased and proportional use of the poor habitat decreased with increasing overall population density, i.e. the rich habitat got increasingly crowded. None of the habitat selection models considered was applicable to explain the dynamics of habitat distribution of breeding mallards.     

African hornbills: keystone species threatened by habitat loss,hunting and international trade

Africa is home to 23 of the world's 54 hornbill species, including the largest members of the family, the ground hornbills. None of Africa's hornbills are currently considered to be at significant risk of extinction by IUCN, and none are listed under the Convention on International Trade in Endangered Species (CITES). However, there is evidence for serious declines of African forest hornbills due to habitat loss and fragmentation, and to unsustainable exploitation for bushmeat. In addition, this paper documents a previously unreported international trade involving importation of African hornbills and their parts into the United States. In the absence of CITES reporting requirements, it is difficult to estimate the magnitude of this trade, but it appears to represent an additional threat to African hornbills, particularly large forest-dwelling species of the genera Bycanistes and Ceratogymna. Given this international trade, and other known threats to African forest-dwelling hornbills, the status of these species is in urgent need of review.     

气候变化对邛崃山系大熊猫主食竹和栖息地分布的影响

气候变化对生物多样性的影响,特别是珍稀濒危物种的影响是当前的研究热点。全球气候变化对大熊猫的影响一直受到广泛关注。根据野外调查的大熊猫活动痕迹点、竹类分布点和主食竹扩散距离数据,采用Maxent模型,利用植被、地形、气候等因素,在RCP8.5下分析了2050年和2070年邛崃山系大熊猫主食竹分布及栖息地变化趋势。结果显示:(1)未来大熊猫适宜生境及主食竹气候适宜区面积均有所减少,到2070年分别减少37.2%和4.7%;(2)未来主食竹分布范围总体向高海拔扩展,但面积持续减少,到2070年分布面积比当前减少8.3%;(3)大熊猫栖息地未来有向高海拔扩张的趋势,在低海拔地区退缩明显,到2070年较当前减少27.2%;但到2070年大熊猫栖息地面积加上非栖息地有主食竹分布的面积,较现有大熊猫栖息地面积大1.5%;(4)受气候变化影响较严重的区域是邛崃山系南部以及低海拔地区,其余区域所受影响相对较小;(5)未来需要加强对受气候变化影响严重区域的监测与保护,特别是邛崃山系中部的大熊猫集中分布区。     

Genetic impacts of habitat loss on the rare ironstone endemic Tetratheca paynterae subsp. paynterae

Expansion of mining in the banded ironstone ranges of southern Western Australia has focussed attention on the genetic impacts of habitat loss on rare endemic taxa. One example is Tetratheca paynterae subsp. paynterae (Elaeocarpaceae), an insect-pollinated, perennial shrub confined to 4 ha of banded ironstone outcrops in the Windarling Range. Mining removed 1,900 of the 7,700 recorded plants in 2004. Further reductions could occur if it can be demonstrated that the viability of the remaining population is not threatened. To investigate the potential impact of reductions in population size due to mining we first used Bayesian clustering and principal coordinate analysis to define population boundaries based on differentiated gene pools. The level of genetic diversity and spatial genetic structuring was then compared among populations that ranged in size from 46 to 4400 individuals. Analysis with 11 microsatellite loci revealed lower genetic diversity in small populations (A _R = 4.5–4.8) than a large population (A _R = 6.3) together with significant pair-wise differences among populations separated by distances of 80 m or more. Spatial autocorrelation analysis showed the extent of spatial genetic structure differed among populations of different size, consistent with near-neighbour mating and limited dispersal. Fine scale spatial structure was consistent with historically low gene flow. Analysis of the impact of possible expansions in mining revealed small, isolated populations of T. paynterae subsp. paynterae were of high conservation value. While their removal would reduce plant numbers and genetic diversity by less than 5%, unique genotypes will be lost resulting in a 30% decline in genetic differentiation.     

Forecasting climate change impacts on the distribution of wetland habitat in the Midwestern United states

Shifting precipitation patterns brought on by climate change threaten to alter the future distribution of wetlands. We developed a set of models to understand the role climate plays in determining wetland formation on a landscape scale and to forecast changes in wetland distribution for the Midwestern United States. These models combined 35 climate variables with 21 geographic and anthropogenic factors thought to encapsulate other major drivers of wetland distribution for the Midwest. All models successfully recreated a majority of the variation in current wetland area within the Midwest, and showed that wetland area was significantly associated with climate, even when controlling for landscape context. Inferential (linear) models identified a consistent negative association between wetland area and isothermality. This is likely the result of regular inundation in areas where precipitation accumulates as snow, then melts faster than drainage capacity. Moisture index seasonality was identified as a key factor distinguishing between emergent and forested wetland types, where forested wetland area at the landscape scale is associated with a greater seasonal variation in water table depth. Forecasting models (neural networks) predicted an increase in potential wetland area in the coming century, with areas conducive to forested wetland formation expanding more rapidly than areas conducive to emergent wetlands. Local cluster analyses identified Iowa and Northeastern Missouri as areas of anticipated wetland expansion, indicating both a risk to crop production within the Midwest Corn Belt and an opportunity for wetland conservation, while Northern Minnesota and Michigan are potentially at risk of wetland losses under a future climate.     

应用Maxent模型分析秦巴地区朱鹮适宜繁殖地的分布

明确濒危鸟类的潜在繁殖地分布,对制定合理有效的保护对策十分重要。本文以朱鹮(Nipponia nippon)为研究对象,选取125个朱鹮巢址分布数据和9个环境因子,应用Maxent模型分析其潜在繁殖地的分布及主要影响因子。结果表明,海拔、土壤亮度、坡度、土壤绿度是影响朱鹮繁殖地分布的主要环境因子,其对模型的综合贡献值分别为38.1%、18.3%、16.4%和14.3%。朱鹮适宜繁殖地分布的最佳海拔范围是500~1 200 m;土壤亮度指数结果显示,适宜繁殖地的分布随着地表裸化程度的增加而显著减少;繁殖地的适宜度与坡度呈现显著负相关关系;土壤绿度指数结果显示,朱鹮繁殖地在中等程度的植被覆盖区域适宜度最高,低植被覆盖区域和高植被覆盖区域的适宜度都降低。当栖息地适宜度指数(habitat suitability index,HSI)阈值分别大于0.5、0.6、0.7时,研究地区内朱鹮适宜繁殖地的总面积分别是1 682.63 km2、944.38 km2、432.96 km2。本研究揭示秦巴地区适宜繁殖地的分布和面积可以满足朱鹮未来几年的自然扩散和再引入保护。     

Reviewing the potential for including habitat fragmentation to improve life cycle impact assessments for land use impacts on biodiversity

Purpose

The biosphere is progressively subjected to a variety of pressures resulting from anthropogenic activities. Habitat conversion, resulting from anthropogenic land use, is considered the dominant factor driving terrestrial biodiversity loss. Hence, adequate modelling of land use impacts on biodiversity in decision-support tools, like life cycle assessment (LCA), is a priority. State-of-the-art life cycle impact assessment (LCIA) characterisation models for land use impacts on biodiversity translate natural habitat transformation and occupation into biodiversity impacts. However, the currently available models predominantly focus on total habitat loss and ignore the spatial configuration of the landscape. That is, habitat fragmentation effects are ignored in current LCIAs with the exception of one recently developed method.

Methods

Here, we review how habitat fragmentation may affect biodiversity. In addition, we investigate how land use impacts on biodiversity are currently modelled in LCIA and how missing fragmentation impacts can influence the LCIA model results. Finally, we discuss fragmentation literature to evaluate possible methods to include habitat fragmentation into advanced characterisation models.

Results and discussion

We found support in available ecological literature for the notion that habitat fragmentation is a relevant factor when assessing biodiversity loss. Moreover, there are models that capture fragmentation effects on biodiversity that have the potential to be incorporated into current LCIA characterisation models.

Conclusions and recommendations

To enhance the credibility of LCA biodiversity assessments, we suggest that available fragmentation models are adapted, expanded and subsequently incorporated into advanced LCIA characterisation models and promote further efforts to capture the remaining fragmentation effects in LCIA characterisation models.

     

Biological and chemical characterizations of three new species of Dysidea (Porifera: Demospongiae) from the Pacific Mexican coast

The integration of biological and chemical data has provided patterns to identify three new Dysidea species from the Gulf of California (Pacific Ocean, Mexico). These three species are differentiated by distinctive morphological characters, such as the prominent subdermal fibers running along the surface in Dysidea reformensis n. sp., the granular appearance of the surface in conjunction with the consistent habit in Dysidea cachui n. sp., and the skeletal details such as tertiary network between the secondary fibers in Dysidea uriae n. sp. Differences are also observed in the natural products content of these species. Sesquiterpene-hydroquinone derivatives are the main secondary metabolites of D. reformensis and D. cachui, with each species displaying a different chemical profile, while the furanosesquiterpene dendrolasin has been isolated from D. uriae. The distinctive morphological characters and the natural products contained by each species are also compared with those of related Dysidea species.     

Genetic resource impacts of habitat loss and degradation; reconciling empirical evidence and predicted theory for neotropical trees

The theoretical impacts of anthropogenic habitat degradation on genetic resources have been well articulated. Here we use a simulation approach to assess the magnitude of expected genetic change, and review 31 studies of 23 neotropical tree species to assess whether empirical case studies conform to theory. Major differences in the sensitivity of measures to detect the genetic health of degraded populations were obvious. Most studies employing genetic diversity (nine out of 13) found no significant consequences, yet most that assessed progeny inbreeding (six out of eight), reproductive output (seven out of 10) and fitness (all six) highlighted significant impacts. These observations are in line with theory, where inbreeding is observed immediately following impact, but genetic diversity is lost slowly over subsequent generations, which for trees may take decades. Studies also highlight the ecological, not just genetic, consequences of habitat degradation that can cause reduced seed set and progeny fitness. Unexpectedly, two studies examining pollen flow using paternity analysis highlight an extensive network of gene flow at smaller spatial scales (less than 10 km). Gene flow can thus mitigate against loss of genetic diversity and assist in long-term population viability, even in degraded landscapes. Unfortunately, the surveyed studies were too few and heterogeneous to examine concepts of population size thresholds and genetic resilience in relation to life history. Future suggested research priorities include undertaking integrated studies on a range of species in the same landscapes; better documentation of the extent and duration of impact; and most importantly, combining neutral marker, pollination dynamics, ecological consequences, and progeny fitness assessment within single studies.     

Microclimate species distribution models estimate lower levels of climate-related habitat loss for salamanders

Species distribution models (SDMs) largely rely on free-air temperatures at coarse spatial resolutions to predict habitat suitability, potentially overlooking important microhabitat. Integrating microclimate data into SDMs may improve predictions of organismal responses to climate change and support targeting of conservation assets at biologically relevant scales, especially for small, dispersal-limited species vulnerable to climate-change-induced range loss. We integrated microclimate data that account for the buffering effects of forest vegetation into SDMs at a very high spatial resolution (3 m²) for three plethodontid salamander species in Great Smoky Mountains National Park (North Carolina and Tennessee). Microclimate SDMs were used to characterize potential changes to future plethodontid habitat, including habitat suitability and habitat spatial patterns. Additionally, we evaluated spatial discrepancies between predictions of habitat suitability developed with microclimate and coarse-resolution, free-air climate data. Microclimate SDMs indicated substantial losses to plethodontid ranges and highly suitable habitat by mid-century, but at much more conservative levels than coarse-resolution models. Coarse-resolution SDMs generally estimated higher mid-century losses to plethodontid habitat compared to microclimate models and consistently undervalued areas containing highly suitable microhabitat. Furthermore, microclimate SDMs revealed potential areas of future gain in highly suitable habitat within current species’ ranges, which may serve as climatic microrefugia. Taken together, this study highlights the need to develop microclimate SDMs that account for vegetation and its biophysical effects on near-surface temperatures. As microclimate datasets become increasingly available across the world, their integration into correlative and mechanistic SDMs will be imperative for accurately estimating organismal responses to climate change and helping environmental managers tasked with spatially prioritizing conservation assets.