膜片钳阵列技术及其应用于药物筛选的研究进展

离子通道是一类重要的药物作用耙点。膜片钳技术是目前进行离子通道研究和影响离子通道药物研究的最好方法。但膜片钳技术通量低,成为应用该法进行药物筛选的最大障碍。膜片钳阵列技术是在普通膜片钳技术基础上发展起来的高通量技术,包括平面膜片钳阵列技术和微管自动化膜片钳技术,已经在药物筛选中得到应用。本文仅就这2种方法当前的研究进展及其在药物筛选中的应用做简单的介绍。     

复合式悬液芯片系统在病原学检测中的临床应用

复合式悬液芯片系统（multiplex suspension array system,MSAS）由悬浮芯片和微流体芯片组成,具有高通量精确定量的特点,而且具有较高的准确性和重复性,在多种蛋白质分子的同时精确定量和大规模样品检测方面有着很大的应用优势,其应用领域覆盖感染性疾病的快速诊断、细胞因子、信号通路、肿瘤标志物、流行病学病原体的筛查、蛋白质的相互作用、单核苷酸多态性（SNP）的研究等。就MSAS在病原学检测中的应用作一简要综述。     

肽核酸(peptide nucleic acid,PNA)阵列

肽核酸(PNA)以N—(2—氨基乙基)甘氨酸替代DNA分子中的磷酸戊糖骨架。它能特异性地识别与DNA、RNA所形成的杂交体。PNA—DNA、PNA—RNA的热稳定性要比相应的DNA—DNA、DNA—RNA高,而且PNA识别单碱基的能力强于DNA和RNA,使之在微阵列,尤其是SNP检测领域有着广泛的应用前景。本文简述了PNA阵列从探针设计、阵列合成、杂交和检测的全过程。     

Investigating copper-regulated protein expression in Menkes fibroblasts using antibody microarrays

Neurodegenerative illnesses are characterized by aberrant metabolism of biometals such as copper (Cu), zinc (Zn) and iron (Fe). However, little is known about the metabolic effects associated with altered metal homeostasis. In this study, we used an in vitro model of altered Cu homeostasis to investigate how Cu regulates cellular protein expression. Human fibroblasts containing a natural deletion mutation of the Menkes (MNK) ATP7A Cu transporter (MNK deleted) were compared to fibroblasts overexpressing ATP7A (MNK transfected). Cultures of MNK-transfected (Low-Cu) cells exhibited 95% less intracellular Cu than MNK-deleted (High-Cu) cells. Comparative proteomic analysis of the two cell-lines was performed using antibody microarrays, and significant differential protein expression was observed between Low-Cu and High-Cu cell-lines. Western blot analysis confirmed the altered protein expression of Ku80, nexilin, L-caldesmon, MAP4, Inhibitor 2 and DNA topoisomerase I. The top 50 altered proteins were analysed using the software program Pathway Studio (Ariadne Genomics) and revealed a significant over-representation of proteins involved in DNA repair and maintenance. Further analysis confirmed that expression of the DNA repair protein Ku80 was dependent on cellular Cu homeostasis and that Low-Cu levels in fibroblasts resulted in elevated susceptibility to DNA oxidation.     

面向经颅聚焦超声的多阵元相控阵关键技术

经颅聚焦超声是一种有效的神经调控技术，具有非侵入性、聚焦靶点多和焦点可调控等优势。但由于颅骨的强声衰减和非均质特性，聚焦超声经颅后存在焦点偏移、焦域能量不足以及颅骨烫伤等问题。多阵元超声相控阵可以修正超声经颅后的相位偏差和幅值衰减，实现准确、有效的颅内聚焦。本文首先介绍了换能器的阵元排布方式，进一步归纳了相控阵激励信号的调控方法，最后对其基础研究和临床应用进行了回顾与展望。     

Biocompatibility of subretinal parylene-based Ti/Pt microelectrode array in rabbit for further artificial vision studies

To evaluate the biocompatibility of subretinal implanted parylene-based Ti/Pt microelectrode arrays (MEA). Eyes were enucleated 3 months after MEAs were implanted into the subretinal space of rabbits. Morphological changes of the retinas were investigated by H&;E staining. Immunohistochemical staining for glial fibrillary acidic protein and opsin were performed to evaluate changes in Muller cells and photoreceptors in the retinas. Retina tissue around the array remained intact. Photoreceptor degeneration and glial cell activation were observed in the retina overlaying the MEA implant. However, the cells in the inner retinal layers were preserved. Photoreceptor degeneration and glial cell activation at the MEA–retina interface are expected to be a normal reaction to implantation. Material used in this experiment has good biocompatibility within the subretinal environment and is expected to be promising in the further retinal prosthesis studies.     

The use of high-performance liquid chromatography and diode array detection in fungal chemotaxonomy based on profiles of secondary metabolites

FRISVAD, J. C, 1989. The use of high-performance liquid chromatography and diode array detection in fungal chemotaxonomy based on profiles of secondary metabolites. Fungal chemotaxonomy (that part dealing with secondary metabolites) has often been based on thin layer chromatography (TLC) and visual or UV inspection of separated spots, before and after different chemical treatments. The identity of a small proportion of the spots can be suggested based on known internal and external standards. In most chemotaxonomical studies it is impossible to isolate, purify and identify all secondary metabolites produced, due to restraints of time and resources. High performance liquid chromatography (HPLC) of fungal extracts may have some advantages over TLC, but the problems mentioned above remain. These problems have been approached by using an alkylphenone retention time index in a reversed phase HPLC system combined with the use of a diode array UV-VIS detector. High performance thin layer chromatography is used for further confirmation of identity of the secondary metabolites. A particular advantage of this method is that the number of biosynthetic families or groups ('chemosyndromes') can be detected, as biosynthetically related metabolites usually have the same chromophores and UV-VIS spectra. Results obtained from Penicillium, Aspergillus and Fusanum species have shown that each species produces 5 to 15 different biosynthetic families of secondaiy metabolites, indicating that good chromatography data may be sufficient to identify species in the three genera. The use of the technique is exemplified by data on Aspergillus and Talaromyces species.     

微孔板蛋白质芯片技术应用于单克隆抗体分型研究

设计与构建了可用于单克隆抗体分型鉴定的微孔板蛋白质芯片,利用该芯片进行了12株单克隆抗体和2种多克隆抗体的分型鉴定,并与ELISA方法进行了对比。结果表明,蛋白质芯片方法对单克隆抗体和多克隆抗体进行鉴定的结果,与ELISA方法进行鉴定的结果一致;与ELISA方法相比,蛋白质芯片的方法降低了试剂与样品的用量,缩短了工作时间,提高了工作效率。对于高通量的单克隆抗体制备体系,单克隆抗体分型蛋白质芯片是一种敏感、快捷的分型鉴定工具。     

Bio-Plex悬浮芯片系统检测两种实验兔白介素基因的差异表达

目的采用液相悬浮芯片系统同时测定实验兔圆小囊中IL-1β、IL-1R1、IL=8、IL-8RA和IL=15各基因的表达情况,并对该方法进行评价。方法利用Affymetrix的Panomics QuantiGene Plex2．0Assay中bDNA信号放大和多磁珠分析技术,来同时检测两种实验兔圆小囊中多重mRNA并定量。建立实验兔免疫相关白介素基因的液相悬浮芯片检测方法。结果可同时检测IL-1β、IL=1R1、IL-8、IL=8RA和IL-15各基因的含量,并发现WHBE兔IL-15基因的相对表达量显著高于JW兔（P〈0．05）,IL-1R1基因的相对表达量显著高于JW兔（P〈0．01）,IL-8RA基因在WHBE兔中的相对表达量也高于JW兔（P〈0．05）。结论建立了实验兔白介素基因的液相悬浮芯片检测方法,WHBE兔的IL-15、IL-1R1和IL-8RA基因表达量较高,可能与WHBE兔独特的免疫学特性有关。     

Fabrication and characterization of a multiwell array SERS chip with biological applications

Uniform, large surface area substrates for surface-enhanced Raman spectroscopy (SERS) are fabricated by oblique angle deposition. The SERS-active substrates are patterned by a polymer-molding technique to provide a uniform array for high throughput biosensing and multiplexing. Using a conventional SERS-active molecule, 1,2-di(4-pyridyl)ethylene (BPE) ≥98%, we show that this device provides a uniform Raman signal enhancement from well to well with a detection limit of at least 10⁻⁸ M of the BPE solution or 10⁻¹⁸ mol of BPE. The SERS intensity is also demonstrated to vary logarithmically with the log of BPE concentration and the apparent sensitivity of the patterned substrate is compared to previous reports from our group on non-patterned substrates. Avian influenza is analyzed to demonstrate the utility of SERS multiwell patterned substrates for biosensing. The spectra acquired from patterned substrates show better reproducibility and less variation compared to the unpatterned substrates according to multivariate analysis. Our results highlight potential advantages of the patterned substrate.     

cDNA array analysis of alterations in gene expression in the promyelocytic leukemia cell line,HL-60, after apoptosis induction with etoposide

Alterations in gene expression during apoptosis in HL-60 cells were identified by a cDNA based array analysis. Apoptosis was induced in the human promyelocytic leukemia cell line, HL-60, by incubation with 30 M etoposide for 5 hours. Changes in gene expression occurring during apoptosis in these cells were detected using the ATLAS cDNA Expression Array technique. 40 genes were identified as differentially expressed in the apoptotic cells by at least a factor of two. 30 of these genes were down-regulated during apoptosis. Many of the down-regulated genes reflected decreased proliferative activity in the cells as well as decreased activity of survival pathways. Most of the genes, which were up-regulated during apoptosis, were genes involved in pathways leading to cell death and suppression of proliferation. Based on the up-regulations observed at the mRNA level, it is speculated that etoposide-induced apoptosis in the HL-60 cells proceeds via pathways involving factors such as TNF, IGFBP3, SAPK1, AP-1 and GADD153/CHOP10. Four genes, which showed changes at the mRNA level, were also analyzed by Western blotting in order to confirm the observed differences at the protein level.     

Analysis of several fluorescent detector molecules for protein microarray use

The utility of several streptavidin‐linked fluorescent detector molecules was evaluated on two protein microarray platforms. Tested detector molecules included: Alexa Fluor 546; R‐phycoerythrin (RPE), orange fluospheres; Cy3‐containing liposomes (Large Unilamellar Vesicles, LUV) labelled with Cy3; and an RPE–antibody complex. The two array architectures tested consisted of an array of murine Fc–biotin and an array of murine IgG (the murine IgG array was probed with a biotinylated rabbit anti‐murine IgG). These platforms allowed for the direct comparison of detector utility by detector recognition of array‐bound biotin. All of the fluorescent detectors examined demonstrated utility on each of the array platforms. For the Fc–biotin array, detector signal intensity (background adjusted) was as follows: RPE–antibody complex > fluospheres > RPE > liposomes > Alexa 546: for the IgG array: RPE/antibody complex > RPE > fluospheres > Alexa546 > liposomes. The RPE–antibody complex fluoresced 67% and 150% more intensely than the next closest detector molecule for the Fc–biotin and the murine IgG arrays, respectively. A marked increase in background fluorescence (as compared to RPE alone) did not accompany the increase in signal intensity gained through RPE–antibody complex use (a true increase in signal:noise ratio). These results suggest that the RPE–antibody complex is superior to other molecules for fluorescent detection of analytes on protein microarrays. Copyright © 2002 John Wiley & Sons, Ltd.     

Serum Protein Profiling Reveals a Landscape of Inflammation and Immune Signaling in Early-stage COVID-19 Infection

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Highlights

• •In-depth profiling of the serum proteome in early-stage COVID-19 patients.
• •A landscape of inflammation and immune signaling related to the SARS-CoV-2 infection.
• •CCL2 and CXCL10 medicated cytokine signaling pathways may correlate with neutrophil and lymphocyte respectively.

     

A parallel programming interface for out-of-core cluster applications

Clusters of workstations are a practical approach to parallel computing that provide high performance at a low cost for many scientific and engineering applications. In order to handle problems with increasing data sets, methods supporting parallel out-of-core computations must be investigated. Since writing an out-of-core version of a program is a difficult task and virtual memory systems do not perform well in some cases, we have developed a parallel programming interface and the support library to provide efficient and convenient access to the out-of-core data. This paper focuses on how these components extend the range of problem sizes that can be solved on the cluster of workstations. Execution time of Jacobi iteration when using our interface, virtual memory and PVFS are compared to characterize the performance for various problem sizes, and it is concluded that our new interface significantly increases the sizes of problems that can be efficiently solved. Jianqi Tang received B.Sc. and M.Sc. from Harbin Institute of Technology in 1997 and 1999 respectively, both in computer application. Currently, she is a Ph.D. candidate at the Department of Computer Science and engineering, Harbin Institute of Technology. She has participated in several National research projects. Her research interests include parallel computing, parallel I/O and grid computing. Binxing Fang received M.Sc. in 1984 from Tsinghua University and Ph.D. from Harbin Institute of Technology in 1989, both in computer science. From 1990 to 1993 he was with National University of Defense Technology as a postdoctor. Since 1984, he is a faculty member at the Department of Computer Science and engineering of Harbin Institute of Technology, where he is presently a Professor. He is a Member of the National Information Expert Consultant Group and a Standing Member of the Council of Chinese Society of Communications. His research efforts focus on parallel computing, computer network and information security. Professor Fang has implemented over 30 projects from the state and ministry/province. Mingzeng Hu was born in 1935. He has been with the Department of Computer Science and engineering in Harbin Institute of Technology since 1958, where he is currently a Professor. He was a visiting scholar in the Siemens Company, Germany from 1978 to 1979, a visiting associate professor in Chiba University, Japan from 1984 to 1985, and a visiting professor in York University, Canada from 1989 to 1995. He is the Director of the National Key Laboratory of Computer Information Content Security. He is also a Member of 3rd Academic Degree Committee under the State Council of China. Professor Hu’s research interests include high performance computer architecture and parallel processing technology, fault tolerant computing, network system, VL design, and computer system security technology. He has implemented many projects from the state and ministry/province and has won several Ministry Science and Technology Progress Awards. He published over 100 papers in core journals home and abroad and one book. Professor Hu has supervised over 20 doctoral students. Hongli Zhang received M.Sc in computer system software in 1996 and Ph.D. in computer architecture in 1999 from Harbin Institute of Technology. Currently, she is an Associate Professor at the Department of Computer Science and engineering, Harbin Institute of Technology. Her research interests include computer network security and parallel computing.     

基于EMDs阵列和BP网络的视觉运动感知过程

以Ｒｅｉｃｈａｒｄｔ的相关型初级运动检测器阵列和Ｒｕｍｅｌｈａｒｔ的误差反传学习（ｌｅａｒｎｉｎｇｂｙｂａｃｋ－ｐｒｏｐａｇａｔｉｎｇｅｒｒｏｒｓ,ＢＰ）网络相结合构成了一个视觉运动感知神经网络,探讨了视觉运动信息的感知过程。试图从计算神经科学的观点来阐明从一推运动分量的检测到二维模式运动感知的神经原理,从而回答运动矢量在脑内如何表征。计算机仿真表明,在有监督学习的条件下,网络可以学会解决局城运动检测所带来的多义性问题,给出模式的真实朝向、运动方向和运动速度。     

Reduced alpha adrenergic mediated contraction of renal preglomerular blood vessels as a function of gender and aging

As human males age, a decline in baroreflex-mediated elevation of blood pressure occurs due, at least in part, to a reduction in alpha-1 adrenergic vasoconstrictor function. Alpha adrenergic constriction is mediated by guanosine triphosphate binding Protein (G Protein) coupled signaling pathways. Alpha-1 A/C, B, and D adrenergic receptor expressions, measured by GeneChip array, are not reduced during aging in renal blood vessels of male or female rats. Alpha-1 A GeneChip expression is greater, at all ages studied, in females than in males. Prazosin binding by alpha-1 adrenergic receptors is greater in young adult female rats than in young adult male rats; however, it is reduced with aging in both male and female rats. G alpha q GeneChip expression declines while expression of adrenergic receptor kinase (GRK2) and tyrosine phosphatases (TyrP) increase with aging in male rats. The declines in alpha-1 adrenergic receptor binding and G alpha q expression and also the increases in GRK2 and TyrP expression likely relate to the age-related decline of vasoconstriction in male rats. The information that the expression of alpha-1 A adrenergic receptors is greater in female rats and (GRK2) expression does not increase during aging could relate to the gender differences in vasoconstrictor function with aging. Gene therapy to ameliorate the age-related decline in renal function could possibly reduce the need for renal dialysis. Signaling pathways such as those reviewed herein may provide an outline of the molecular pathways needed to move toward successful renal gene therapy for aging individuals.     

Distribution and chemical characterization of regular arrays in the cell walls of strains of the genus Lactobacillus

Abstract The presence of regular arrays (RAs) in the cell walls of strains of the genus Lactobacillus was examined by electron microscopy. The RAs were found in 6 species including L. bulgaricus, L. helveticus, L. acidophilus, L. fermentum, L. brevis and L. buchneri . The RAs were composed of a protein with an apparent M _r ranging from about 41000 to 55000, depending on the species upon sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The amino acid composition of the RA proteins was shown to be acidic and hydrophobic. The antigenicity of the RA protein from L. buchneri appeared to be specific but not common among the RA proteins from the other lactobacilli.