A quantitative study of copulatory behaviour of large Felidae

A total of 109 copulations was observed in six male-female pairs from four species of large Felidae. The mean intromission durations were 3.0 sec for Asian leopards (Panthera pardus), 3.3 sec for African leopards (Panthera pardus), 12.9 sec for snow leopards (Uncia uncia), 2.3 sec for spotted jaguars (Panthera onca), 3.3 sec for black jaguars (Panthera onca), and 12.4 sec for Siberian tigers (Panthera tigris). Behavioural patterns were qualitatively similar across species; all displayed a copulatory pattern with no lock, no intra-vaginal thrusting, ejaculation on a single insertion, and multiple ejaculations. Whereas domestic cats are reported to assume a neck grip and to tread prior to insertion, these larger Felidae generally did so after intromission had been achieved. After copulation, females of some pairs swiped at the male and displayed a rolling after-reaction.     

Hunting behaviour in West African forest leopards

The leopard (Panthera pardus) is a major predator of mammals within the rainforest ecosystem of West Africa. Most of the available information on leopard hunting behaviour comes from studies conducted in open savannah habitats, while little is known about forest leopards. Our radio‐tracking data and scat analysis show that forest leopards differ in various ways from the savannah populations. Forest leopards are diurnal and crepuscular hunters who follow the activity pattern of their prey species. They exhibit seasonal differences in activity patterns, and they develop highly individualized prey preferences. These findings challenge the widespread notion of leopards as opportunistic nocturnal predators.     

A select panel of polymorphic microsatellite loci for individual identification of snow leopards (Panthera uncia)

Snow leopards (Panthera uncia) are elusive endangered carnivores found in remote mountain regions of Central Asia. New methods for identifying and counting snow leopards are needed for conservation and management efforts. To develop molecular genetic tools for individual identification of hair and faecal samples, we screened 50 microsatellite loci developed for the domestic cat (Felis catus) in 19 captive snow leopards. Forty‐eight loci were polymorphic with numbers of alleles per locus ranging from two to 11. The probability of observing matching genotypes for unrelated individuals (2.1 × 10^?11) and siblings (7.5 × 10^?5) using the 10 most polymorphic loci was low, suggesting that this panel would easily discriminate among individuals in the wild.     

Factors influencing the distribution of leopard in a semiarid landscape of Western India

Previously, factors governing distribution of leopard (Panthera pardus fusca) in forest habitats of the Indian subcontinent were unknown. The present study assessed the influence of different ecogeographic variables determining the distribution of leopards in and around Sariska Tiger Reserve through MaxEnt habitat suitability model based on camera trapping method. Camera trapping was used to collect presence/absence information in the study area from December 2008 to June 2010. Information of 11 macrohabitat characteristics and variables (habitat types, prey species, Normalized Difference Vegetation Index (NDVI), elevation, livestock, village, water source, etc.) were collected along with leopard presence data. The probability of presence of leopards increased with decreasing distance to water and increasing encounter rate of peafowl (Pavo cristatus), chital (Axis axis), sambar (Rusa unicolor), and wild pig (Sus scrofa). It was found that the probability of presence of leopards increased with increasing area of Zizyphus mixed forest patches and NDVI. Results of this study showed that the probability of presence of leopards was higher in habitat types with intermediate cover, high wild prey base, and water sources. They also indicated that leopards are not always ‘generalists’ showing some degree of specialization, at least in their choice of habitat, and this information is useful for conserving leopard in human-dominated landscapes.     

Individual identification of Amur leopards (Panthera pardus orientalis) using molecular-genetic methods and the population size estimation

For the first time, the genetic structure of a population of Amur leopards (Panthera pardus orientalis) in southwest Primorie was analyzed in detail. In 2010–2012, 23 individuals were identified individually. It was shown that the studied microsatellite markers are suitable for individual identification of leopards, monitoring the population numbers, and creating a unified database of genetic profiles of this species to solve research and nature-conservation tasks.     

How can third codon positions outperform first and second codon positions in phylogenetic inference? An empirical example from the seed plants

Greater phylogenetic signal is often found in parsimony-based analyses of third codon positions of protein-coding genes relative to their corresponding first and second codon positions, even for early-derived ("basal") clades. We used the Soltis et al. (2000; Bot. J. Linn. Soc. 133:381-461) data matrix of atpB and rbcL from 567 seed plants to quantify how each of six factors (observed character-state space, frequencies of observed character states, substitution probabilities among nucleotides, rate heterogeneity among sites, overall rate of evolution, and number of parsimony-informative characters) contributed to this phenomenon. Each of these six factors was estimated from the original data matrix for parsimony-informative third codon positions considered separately from first and second codon positions combined. One of the most parsimonious trees found was used as the constraint topology; branch lengths were estimated using likelihood-based distances, and characters were simulated on this tree. Differential frequencies of observed character states were found to be the most limiting of the factors simulated for all three codon positions. Differential frequencies of observed character states and differential substitution probabilities among states were relatively advantageous for first and second codon positions. In contrast, differential numbers of observed character states, differential rate heterogeneity among sites, the greater number of parsimony-informative characters, and the higher overall rate of evolution were relatively advantageous for third codon positions. The amount of possible synapomorphy was predictive of the overall success of resolution.     

Effects of temporary closure of a national park on leopard movement and behaviour in tropical Asia

Across Asia protected areas serve as refuges for carnivores inside human-dominated landscapes. However, the creation of hard edges around reserve boundaries where conflicts with humans arise and disturbance from human activities inside the reserves may affect carnivore behaviour and ecology. Thailand’s largest protected area, Kaeng Krachan National Park (2915 km²) receives >100,000 visitors annually while maintaining an intact assemblage of prey species for large carnivores, making it a potentially important site for population recovery of leopards (Panthera pardus), tigers (Panthera tigris) and dholes (Cuon alpinus). We assessed the abundance of leopards and their prey base, and their response to changes in levels of human activity after an unexpected flooding event that resulted in the park being closed to visitors for >6 months. Using camera-traps, we identified 6 individual leopards and used spatially explicit capture-recapture (SECR) methods, incorporating humans and prey as covariates, to test for factors affecting the detection probability of leopards before and after the park closure. Leopard density was unchanged between the two periods, however the movement and activity patterns were clearly different. In the absence of tourist activity, leopards tended to move more frequently, leopard detection rates increased by 70% and activity shifted towards being more diurnal. The consequences of these changes in behaviour may include improved health, reproduction and survival. A management strategy involving seasonal closure of parks may serve to alleviate pressure on leopards and other carnivores. We recommend using information on abundance of large carnivores and their prey species, and human disturbance as the key indicators for long-term monitoring and management of protected areas in Southeast Asia.     

Meta-analysis of character utility and phylogenetic information content in cladistic studies of ammonoids

While previous workers have argued persuasively that ammonoid workers should use cladistic approaches to reconstruct phylogeny, relatively few cladistic studies have been published to date. An essential yet challenging part of cladistic analysis is the selection of characters. Are certain types of characters more likely to show homoplasy? Are certain aspects of shell anatomy more likely to contain phylogenetically informative characters? Are datasets with more characters inherently better? To answer these questions, a meta-analysis of character data from published ammonoid phylogenies was performed. I compiled 14 datasets, published between 1989 and 2007, representing parsimony-based phylogenetic analyses of ammonoids. These studies defined a combined total of 323 characters, which were grouped into categories reflecting different aspects of anatomy: shell size and shape, ornament, suture, early ontogeny, body chamber and apertural modifications. Tree searches were re-run to determine overall tree statistics, parsimony permutation tail probability (PTP) tests were calculated to assess the phylogenetic information content of the matrices, and retention and rescaled consistency indices for each character were calculated. My analyses revealed that studies with higher character/taxon ratios did not necessarily produce trees with more information content and less homoplasy, as measured by retention or rescaled consistency indices, because additional characters were often parsimony-uninformative. Rather, studies with relatively few characters could produce high-quality trees if the characters were well-chosen and character states carefully defined. Characters related to the body chamber and adult aperture typically had retention indices of either 0 or 1, rarely in between, indicating that they either worked perfectly or not at all. Suture characters tended to have higher indices than shell shape or ornament characters, suggesting more phylogenetic information and less homoplasy in the suture line than in shell traits. These results should aid in the selection of characters for future cladistic studies of ammonoids.     

Can whisker spot patterns be used to identify individual polar bears?

Studies of population dynamics, movement patterns and animal behavior usually require identification of individuals. We evaluated the reliability of using whisker spot patterns to noninvasively identify individual polar bears Ursus maritimus . We obtained the locations of polar bear whisker spots from photographs taken in western Hudson Bay, tested the independence of spot locations, estimated the complexity of each spot pattern in terms of information and determined whether each whisker spot pattern was reliable from its information content. Of the 50 whisker spot patterns analyzed, 98% contained enough information to be reliable, and this result varied little among observers. Photographs taken <50 m from polar bears were most useful. Our results suggest that individual identification of polar bears in the field based on whisker spot pattern variations is reliable. Researchers studying polar bear behavior or estimating population parameters can benefit from this method if proximity to the bears is feasible.     

Twelve polymorphic microsatellite loci for the South China tiger Panthera tigris amoyensis

Twelve microsatellite loci were found from genomic DNA‐enriched libraries of the South China tiger (Panthera tigris amoyensis). The number of observed alleles for each locus in 53 individuals ranged from five to 14; the expected and observed heterozygosity was 0.480 to 0.883 and 0.333 to 0.956, respectively; and the mean polymorphic information content (PIC) was 0.729. These markers would be considered a useful tool for the study of genetic variation in South China tiger in the future.     

Statistical models of synaptic transmission evaluated using the expectation-maximization algorithm.

Amplitude fluctuations of evoked synaptic responses can be used to extract information on the probabilities of release at the active sites, and on the amplitudes of the synaptic responses generated by transmission at each active site. The parameters that describe this process must be obtained from an incomplete data set represented by the probability density of the evoked synaptic response. In this paper, the equations required to calculate these parameters using the Expectation-Maximization algorithm and the maximum likelihood criterion have been derived for a variety of statistical models of synaptic transmission. These models are ones where the probabilities associated with the different discrete amplitudes in the evoked responses are a) unconstrained, b) binomial, and c) compound binomial. The discrete amplitudes may be separated by equal (quantal) or unequal amounts, with or without quantal variance. Alternative models have been considered where the variance associated with the discrete amplitudes is sufficiently large such that no quantal amplitudes can be detected. These models involve the sum of a normal distribution (to represent failures) and a unimodal distribution (to represent the evoked responses). The implementation of the algorithm is described in each case, and its accuracy and convergence have been demonstrated.     

Evaluating Methods for Counting Cryptic Carnivores

ABSTRACT Numerous techniques have been proposed to estimate carnivore abundance and density, but few have been validated against populations of known size. We used a density estimate established by intensive monitoring of a population of radiotagged leopards (Panthera pardus) with a detection probability of 1.0 to evaluate efficacy of track counts and camera-trap surveys as population estimators. We calculated densities from track counts using 2 methods and compared performance of 10 methods for calculating the effectively sampled area for camera-trapping data. Compared to our reference density (7.33 ± 0.44 leopards/100 km²), camera-trapping generally produced more accurate but less precise estimates than did track counts. The most accurate result (6.97 ± 1.88 leopards/100 km²) came from camera-trap data with a sampled area buffered by a boundary strip representing the mean maximum distance moved by leopards outside the survey area (MMDMOSA) established by telemetry. However, contrary to recent suggestions, the traditional method of using half the mean maximum distance moved from photographic recaptures did not result in gross overestimates of population density (6.56 ± 1.92 leopards/100 km²) but rather displayed the next best performance after MMDMOSA. The only track-count method comparable to reference density employed a capture-recapture framework applied to data when individuals were identified from their tracks (6.45 ± 1.43 leopards/100 km²) but the underlying assumptions of this technique limit more widespread application. Our results demonstrate that if applied correctly, camera-trap surveys represent the best balance of rigor and cost-effectiveness for estimating abundance and density of cryptic carnivore species that can be identified individually.     

Do tigers displace leopards? If so, why?

We investigated predictions concerning the competitive relationships between tigers Panthera tigris and leopards Panthera pardus in Bardia National Park, Nepal, based on spatial distributions of scats and territorial markings (sign), analyses of scat content and census of wild ungulate prey. Medium-sized ungulates, in particular chital Axis axis, was the main food of both predators, but leopards consumed significantly larger proportions of domestic animals, small mammals, and birds than tigers. Tiger sign were never found outside the park, while leopard sign occurred both inside and outside, and were significantly closer to the park border than tiger sign. Significantly higher prey densities at locations of tiger sign than that of leopards were mainly due to a preference of the latter species for the park border areas. Our results imply that interference competition––and not competition for food––was a limiting factor for the leopard population, whose distribution was restricted to the margins of the tiger territories. We suggest that the composition of the prey base is a key factor in understanding the different results and interpretations reported in studies on tiger/leopard coexistence. There are two potential mechanisms that link interference competition and prey: (1) low abundance of large ungulate prey decreases foraging efficiency of tigers, leading to increased energetic stress and aggression towards leopards; and (2) increased diet overlap due to scarcity of large prey leads to increased encounter rates and increased levels of interference competition.     

The impact of climate on Leptospirosis in São Paulo,Brazil

In this work, we correlate the daily number of human leptospirosis cases with several climatic factors. We used a negative binomial model that considers hospital daily admissions due to leptospirosis as the dependent variable, and the climatic variables of daily precipitation pattern, and maximum and minimum temperature as independent variables. We calculated the monthly leptospirosis admission probabilities from the precipitation and maximum temperature variables. The month of February showed the highest probability, although values were also high during the spring months. The month of February also showed the highest number of hospital admissions. Another interesting result is that, for every 20 mm precipitation, there was an average increase of 31.5% in hospital admissions. Additionally, the relative risk of leptospirosis varied from 1.1 to 2.0 when the precipitation varied from 20 to 140 mm.     

新疆托木尔峰国家级自然保护区雪豹的种群密度

雪豹(Panthera uncia)是一种仅公布于中亚高山地区的珍稀濒危大型猫科动物,被IUCN红皮书列为濒危物种,并被收录入CITES公约附录Ⅰ,在中国雪豹被列为国家一级重点保护动物(杨奇森和冯祚建,1998).     

Tree-average distances on certain phylogenetic networks have their weights uniquely determined

ABSTRACT: A phylogenetic network N has vertices corresponding to species and arcs corresponding to direct genetic inheritance from the species at the tail to the species at the head. Measurements of DNA are often made on species in the leaf set, and one seeks to infer properties of the network, possibly including the graph itself. In the case of phylogenetic trees, distances between extant species are frequently used to infer the phylogenetic trees by methods such as neighbor-joining. This paper proposes a "tree-average" distance for networks more general than trees. The notion requires a "weight" on each arc measuring the genetic change along the arc. For each displayed tree the distance between two leaves is the sum of the weights along the path joining them. At a hybrid vertex, each character is inherited from one of its parents. We will assume that for each hybrid there is a probability that the inheritance of a character is from a specified parent. Assume that the inheritance events at different hybrids are independent. Then for each displayed tree there will be a probability that the inheritance of a given character follows the tree; this probability may be interpreted as the probability of the tree. The "tree-average" distance between the leaves is defined to be the expected value of their distance in the displayed trees. For a class of rooted networks that includes rooted trees, it is shown that the weights and the probabilities at each hybrid vertex can be calculated given the network and the tree-average distances between the leaves. Hence these weights and probabilities are uniquely determined. The hypotheses on the networks include that hybrid vertices have indegree exactly 2 and that vertices that are not leaves have a tree-child.     

Epigenetic randomness, complexity and singularity of human iris patterns

We investigated the randomness and uniqueness of human iris patterns by mathematically comparing 2.3 million different pairs of eye images. The phase structure of each iris pattern was extracted by demodulation with quadrature wavelets spanning several scales of analysis. The resulting distribution of phase sequence variation among different eyes was precisely binomial, revealing 244 independent degrees of freedom. This amount of statistical variability corresponds to an entropy (information density) of about 3.2 bits mm(-2) over the iris. It implies that the probability of two different irides agreeing by chance in more than 70% of their phase sequence is about one in 7 billion. We also compared images of genetically identical irides, from the left and right eyes of 324 persons, and from monozygotic twins. Their relative phase sequence variation generated the same statistical distribution as did unrelated eyes. This indicates that apart from overall form and colour, iris patterns are determined epigenetically by random events in the morphogenesis of this tissue. The resulting diversity, and the combinatorial complexity created by so many dimensions of random variation, mean that the failure of a simple test of statistical independence performed on iris patterns can serve as a reliable rapid basis for automatic personal identification.     

Efficient Simulation of Multivariate Binomial and Poisson Distributions

Power investigations, for example, in statistical procedures for the assessment of agreement among multiple raters often require the simultaneous simulation of several dependent binomial or Poisson distributions to appropriately model the stochastical dependencies between the raters' results. Regarding the rather large dimensions of the random vectors to be generated and the even larger number of interactions to be introduced into the simulation scenarios to determine all necessary information on their distributions' dependence stucture, one needs efficient and fast algorithms for the simulation of multivariate Poisson and binomial distributions. Therefore two equivalent models for the multivariate Poisson distribution are combined to obtain an algorithm for the quick implementation of its multivariate dependence structure. Simulation of the multivariate Poisson distribution then becomes feasible by first generating and then convoluting independent univariate Poisson variates with appropriate expectations. The latter can be computed via linear recursion formulae. Similar means for simulation are also considered for the binomial setting. In this scenario it turns out, however, that exact computation of the probability function is even easier to perform; therefore corresponding linear recursion formulae for the point probabilities of multivariate binomial distributions are presented, which only require information about the index parameter and the (simultaneous) success probabilities, that is the multivariate dependence structure among the binomial marginals.     

Unterartenfrage Persischer Leoparden geklärt

The Studbook for the Persian Leopard, Panthera pardus saxicolor, was analyzed. The whole population derives from a few founder animals, imported in the midth fifties from Iran and in the late sixties from Afghanistan. To avoid inbreeding later on the Iranian and the Afghan lines were mixed. A female imported in 1968 from Kabul to Cologne is represented in each of the more than 100 animals living today.This study deals with the question of subspecies of leopards in Afghanistan. Out of the 27 subspecies described four are believed to exist in Afghanistan. However, according to a molecular-biological revision of the species there is only one subspecies in Afghanistan, Panthera pardus saxicolor. To clarify the subspecies question various measures of furs have been taken in the bazars. The results revealed that the leopards in Afghanistan are the biggest of its species. However a further differentiation according to the area of origin within the country was not possible. Also the traditional differentiation on the basis of colours and patterns on the furs was not possible.In contrast to the molecular-biological investigations published, not only samples of zoo animals were available in this study but also samples from the wild. The results confirm that almost all leopards from Afghanistan and Iran belong to one and the same subspecies. Only in the most eastern part of Afghanistan, the Indian leopard, Panthera pardus fusca, can be found.Mixing the two lines subsequently is justified by the results of this study. Recently acquired animals from the Caucasus, however, should be tested genetically before integrating them into the zoo population.