A taxonomic reappraisal of the Atlanto-Mediterranean soles Solea solea, S. senegalensis and S. lascaris

Examination of morphometric characters of Solea aegyptiaca shows that it cannot be separated from Solea solea . Diagnostic characters are given to separate this species from S. senegalensis . The available data show that Solea impar and S. nasuta are junior synonyms of S. lascaris . Meristic characters of S. solea and S. lascaris vary greatly according to the geographical origin of the examined fishes, indicating the influence of temperature on the number of vertebrae and fin rays. A key is provided for the identification of the four species of the genus Solea known in the Atlanto-Mediterranean region.     

The complete mitochondrial genome of the Senegal sole, Solea senegalensis Kaup. Comparative analysis of tandem repeats in the control region among soles.

The complete nucleotide sequence of the mitochondrial genome for the Senegal sole Solea senegalensis Kaup was determined. The mitochondrial DNA was 16,659 base pairs (bp) in length. Sequence features of the 13 protein-coding genes, two ribosomal RNAs and 22 transfer RNAs are described. The non-coding control region (1017 bp) was compared with those of the closely related soles Solea solea and Solea lascaris. The typical conservative blocks were identified. A cluster of 42 and 22 tandemly arrayed repeats was detected near the 3' end of control region in S. solea and S. lascaris, respectively. On the contrary, only two (93.8% of haplotypes) or three copies (6.2%) of an 8-bp repeated sequence motif was found in S. senegalensis. Phylogenetic analysis showed that 7 out of 9 of haplotypes bearing three copies grouped in a separate cluster. Possible mechanisms influencing the evolution of control region among soles are discussed.     

Multivariate analysis of genetic exchanges between Solea aegyptiaca and Solea senegalensis (Teleosts, Soleidae)

Electrophoretic data from different populations of the teleosts Solea senegalensis, S. aegyptiaca and S. vulgaris were analysed using multivariate analysis. This confirmed that Solea vulgaris is very different genetically and isolated from both senegalensis and aegyptiaca , and that the latter two forms are also well differentiated. The presence of senegalensis alleles in the aegyptiaca population of the Golfe-du-Lion, and reciprocally, aegyptiaca alleles in the senegalensis population of the Gulf of Tunis, suggests that genetic exchange occurs between them. The association of these alleles (gametic disequilibria) and the existence of hybrid individuals show that these exchanges are an actual process rather than a consequence of 'fossil' gene flow. Furthermore, the genetic introgression seems to be asymmetrical in the two regions studied where they come into contact.     

Biosystematics and genetic relationships of Solea aegyptiaca and S. senegalensis

The isoenzymes from seven populations of Solea senegalensis or aegyptiaca were compared et 24–30 loci, six of which display significant differences in their allelic frequencies. In addition, these populations were compared to six other Soleidae species, namely Solea vulgaris, S. impar, S. lascaris, S. lutea, Michrochirus azevia, and M. variegatus. It was shown that S. senegalensis and S. aegyptiaca can be separated into two distinct genetic groups. Their high genetic similarity in comparison with the other species of Soleidae studied suggests that they have a common origin. The systematic status (species or semispecies) of these taxa could not, however, be elucidated. The high degree of genetic polymorphism observed in the regions where the two taxe are found together suggests that there still is some gene flow between them. However, this could be due to selection.     

Comparative study of sexual cycles, oogenesis and spawning of two Soleidae, Solea lascaris (Risso, 1810) and Solea impar (Bennet, 1831), on the western coast of Brittany

Two sand sole species, Solea lascaris and Solea impar , are common on the western coast of Brittany, France. Their reproduction (oogenesis and spawning) has been studied by following the gonadosomatic index, histological changes in ovary development, and oocyte diameter distribution. Both species have a prolonged spawning season, from spring to late summer. Each mature female breeds twice during the spawning season: in May and July for 5. lascaris , and in early June and July for 5. impar. Throughout the spawning season, several oocyte batches undergo vitellogenesis and there is a continuous recruitment of immature or primary oocytes into vitellogenesis. The two species are thus serial synchronous spawners. This, together with oocyte atresia late in the season (especially noticeable in S. impar ) makes fecundity estimation difficult.     

Growth variability of juvenile soles Solea solea and Solea senegalensis, and comparison with RNA : DNA ratios in the Tagus estuary, Portugal

Growth variability and condition of juvenile soles Solea solea and Solea senegalensis , were assessed through RNA : DNA estimates and compared to absolute growth rates. Higher mean cohort RNA : DNA ratios were observed for cohort I at the beginning of estuarine occurrence for both species (4·42 and 4·87, for S. solea and S. senegalensis respectively). Despite different estuarine colonization habits, no significant differences were observed between RNA : DNA monthly variation for both sole species within the same year ( P  > 0·05 for 2003 and 2004). Juvenile S. senegalensis showed significant differences between RNA : DNA ratios obtained for the two nursery areas ( P  < 0·001). The decrease of seasonal growth rates with fish age was similar to seasonal variation of mean RNA : DNA values. Thus the RNA : DNA pattern of juvenile S. solea and S. senegalensis reflected growth and estuarine colonization patterns.     

圆斑星鲽及相关种类线粒体DNA控制区结构分析

采用PCR产物直接测序法测定了圆斑星鲽(Verasper variegatus)的24个个体的线粒体控制区(Control region)核苷酸全序列, 并进行了结构分析。结果表明, 圆斑星鲽线粒体控制区核苷酸全序列具有长度多态性, 得到4种长度单元型, 主要表现为控制区中的串联重复序列的长度不同。对鲽形目鱼类如鲽科的条斑星鲽(Verasper moseri)、黄盖鲽(Limanda feruginea)、马舌鲽 (Reinhardtius hippoglossoides), 美洲拟庸鲽(Heppoglossoides platessoides )和鲆科的牙鲆(Paralichthys olivaceus)以及鳎科的欧洲鳎(Solea solea)、塞内加尔鳎(S. senegalensis)和沙鳎(S. lascari)的控制区的比较研究发现, 鲽形目鱼类的线粒体控制区均存在相似的结构, 即线粒体控制区可分为终止相关序列区(ETAS)、中央保守区(包括CSB-A、CSB-B、CSB-C、CSB-D、CSB-E、CSB-F)以及保守序列区(CSB1、CSB2、CSB3)和重复序列区(Repeat region)4个区域。通过与脊椎动物各个纲线粒体控制区序列的比较分析, 发现只有鲽形目(包括鲆、鲽类和鳎类)鱼类和两栖纲的无尾类在CSB-3之后存在相似的串联重复序列。     

Comparative feeding ecology of sympatric Solea solea and S. senegalensis, within the nursery areas of the Tagus estuary, Portugal

Among the stomach contents of 609 individuals of Solea solea and 1104 of S. senegalensis the main food items of S. solea were Corophium spp. and Hediste diversicolor, and of S. senegalensis were Corophium spp., H. diversicolor and Scrobicularia plana. For both species, the importance of larger prey items in the diet, namely H. diversicolor and Crangon crangon, increased with fish size. Feeding activity of S. solea and S. senegalensis increased in spring and summer. Short-term variations were particularly related to the tidal cycle and the two species fed in intertidal areas. Dietary dierences between the two nursery areas reflected prey availability mainly. Although intra- and interspecific length classes overlapped in diet, potential interspecific competition was probably minimized by a dierential habitat use pattern.     

东海普通波水蚤种群特征与环境关系研究

根据1997～2000年东海23°30′～33°N、118°30′～128°E海域4个季节海洋调查资料,对东海浮游桡足类普通波水蚤(Undinula vulgaris)自然种群特征与环境的关系进行研究,并与1979～1980年资料进行比较.结果表明,普通波水蚤优势度、平均丰度、出现频率和占浮游桡足类总丰度的百分比均有显著的季节变化,其中秋季分别为0.09、556 ind·100 m^-3、93.69％和9.90％,夏季为0.03、86 ind·100 m^-3、68.49％和4.08％,冬季为0.02、42 ind·100 m^-3、53.85％和3.80％,春季为0.01、16 ind·100 m^-3、34.35％和2.31％.普通波水蚤在东海的优势性主要表现在秋季.与20年前同海域研究结果相比,近年春、夏和秋3季普通波水蚤在东海浮游桡足类中的重要性有所降低,而冬季有所增加.冬季的增加可能与全球气候变暖相关.底层水环境变化是影响普通波水蚤种群数量分布的主要因子,说明该种数量变化与暖流势力有密切关系.普通波水蚤对沿岸水团和低温环境敏感,其高丰度分布区是暖流位置的良好指示.作为秋季东海重要的桡足类浮游动物,普通波水蚤在东海海洋渔业中有重要意义.     

Microsatellite DNA variation reveals high gene flow and panmictic populations in the Adriatic shared stocks of the European squid and cuttlefish (Cephalopoda)

In the semienclosed Adriatic Sea, the shared stocks of the cephalopods Loligo vulgaris and Sepia officinalis represent important marine fisheries resources exploited by all coastal countries. The improving of knowledge on the demographic features of these shared stocks is internationally relevant for adopting responsible management and conservation of these marine resources. Analyses of microsatellite variation in geographical samples collected from all parts of the Adriatic Sea were performed using arrays of species-specific di-nucleotide and tri-nucleotide loci. In L. vulgaris the level of genetic variability was consistent with that observed in other loliginid species, whereas the S. officinalis stock showed a microsatellite variation markedly lower than that estimated for the Atlantic and Mediterranean populations collected around the Iberian peninsula. The weak spatial genetic differentiation, the discordant results of the genetic divergence estimators and the lack of any geographical cline in the spatial genetic differences suggest the occurrence of single genetically homogeneous populations within the Adriatic stocks of both species, recommending a coordinated management of the squid and cuttlefish by the Adriatic fishing countries. On the contrary, significant differences detected in temporal replicates of S. officinalis might suggest that allelic frequency can change relating to reproductive behaviour.     

Differential Use of Nursery Areas Within the Tagus Estuary by Sympatric Soles, Solea solea and Solea senegalensis

The spatio-temporal pattern of estuarine use by both Solea solea and Solea senegalensis was investigated between April 1995 and November 1996 by beam trawl surveys. Spatial and seasonal distribution and abundance were different for each species. The highest densities of S. solea were recorded in deeper, warmer, low salinity areas and where the sediment consisted of a high proportion of fine sand and presented a high abundance of amphipods. The 0-group individuals of this species first occurred on the nursery ground in April. Numbers peaked in June and July, and from October to April abundance was low. S. senegalensis had a wider distribution and its abundance was related to food availability. The 0-group individuals of this species occurred in the nursery areas later than S. solea, from June to August.     

Expanding hybrid zone between Solea aegyptiaca and Solea senegalensis: genetic evidence over two decades

Several marine hybrid zones have been described and studied during the last years. Assessing the movements of extending hybrid zones is central to improve our understanding of evolutionary processes. We have re-examined the hybrid zone between Solea aegyptiaca and Solea senegalensis that was first described 22 years ago in northern Tunisia when introgressed S. senegalensis individuals were found in the Gulf of Tunis, whereas locally caught S. aegyptiaca were genetically pure. Six population samples harvested both inside and outside the area where the two fish species coexist were genotyped for allozymes and exon-primed intron length polymorphism. Both types of markers were congruent and revealed that introgression takes place indeed in both directions. A high introgression level (36.4%) in the Bizerta lagoon and much less outside indicate that this is the main area where hybridization occurs while introgression clines towards the south in S. aegyptiaca and towards the north in S. senegalensis plead in favour of the existence of a unimodal hybrid zone. The higher introgression level calculated in the current study (when compared to 16% reported formerly) and the newly found introgressed S. aegyptiaca in Bizerta lagoon seem to indicate that the genetic exchanges occurring between the two taxa are evolving and not stabilized yet.     

广东省茂名油页岩废渣堆放场主要树种的叶片气孔气体交换

在茂名油页岩废渣堆放场主要绿化树种中选取青梅(Vaticamangachapoi)、海南红豆(Ormosiapinnata)和非洲桃花心木(Khayasenegalensis)3种植物进行测定。结果表明,3种植物的净光合速率的大小有明显的差异,从大到小的顺序是非洲桃花心木>海南红豆>青梅,海南红豆和非洲桃花心木的光合速率日变化幅度较大,而青梅的则相对较小;气孔导度从大到小依次为非洲桃花心木>海南红豆>青梅;三者净光合速率的差异与气孔导度有关。非洲桃花心木虽然具有较高的净光合速率,但由于其气孔导度较高,散失的水分较多,其内在水分利用效率比海南红豆低。青梅下午的内在水分利用效率比上午高得多,是由于其气孔导度下午比上午明显降低而限制了蒸腾失水的缘故。在油页岩废渣场,海南红豆和非洲桃花心木比青梅具有较强的生态适应性。     

Genetic divergence in lizardfishes of the genusSaurida from southern Japan

Genetic divergence in four taxa of three species ofSaurida, S. undosquamis south (S) and north (N) types,S. wanieso andS. elongata caught from the East China Sea, Sea of Hyuga and Tosa Bay, was studied based on allelic frequencies at 23 genetic loci surveyed electrophoretically. Fixed allele substitution was observed at eight loci between the S and N types ofS. undosquamis and their genetic distance was 0.5582, within a range of differentiation at the species level. The S type ofS. undosquamis was found to inhabit the Sea of Hyuga and off Cape Ashizuri along the Kuroshio Current, in addition to the East China Sea. The low level of genetic variation found for this type was discussed in relation to its restricted habitat at the edge of the continental shelf. These factors, along with some morphological characters, indicate that the two types ofS. undosquamis should be recognized as distinct species.     

Mosquito species composition and Plasmodium vivax infection rates on Baengnyeong-do (island), Republic of Korea

Vivax malaria is a significant military and civilian health threat in the north of the Republic of Korea (ROK). The island of Baengnyeong-do is the westernmost point of the ROK and is located close to the southwestern coast of the Democratic People's Republic of Korea (DPRK). Mosquitoes were collected using a black light trap on Baengnyeong-do, and Anopheles spp. were assayed by PCR, to identify the species, and screened for sporozoites of Plasmodium vivax. Of a subsample of 257 mosquitoes, Anopheles lesteri was the most frequently collected (49.8%), followed by Anopheles sinensis (22.6%), Anopheles pullus (18.7%), Anopheles kleini (7.8%), and Anopheles belenrae (1.2%). The overall sporozoite rate was 3.1%, with the highest rates observed in An. kleini (15.0%), An. sinensis (5.2%), and An. lesteri (1.6%). No sporozoite positive An. pullus or An. belenrae were observed. The results extend our knowledge of the distribution and potential role in malaria transmission of An. kleini, An. lesteri, and An. sinensis, for an area previously considered to be at a low risk for contracting vivax malaria.     

Rapid microsatellite marker development for African mahogany (Khaya senegalensis, Meliaceae) using next-generation sequencing and assessment of its intra-specific genetic diversity

Khaya senegalensis (African mahogany or dry-zone mahogany) is a high-value hardwood timber species with great potential for forest plantations in northern Australia. The species is distributed across the sub-Saharan belt from Senegal to Sudan and Uganda. Because of heavy exploitation and constraints on natural regeneration and sustainable planting, it is now classified as a vulnerable species. Here, we describe the development of microsatellite markers for K. senegalensis using next-generation sequencing to assess its intra-specific diversity across its natural range, which is a key for successful breeding programs and effective conservation management of the species. Next-generation sequencing yielded 93,943 sequences with an average read length of 234 bp. The assembled sequences contained 1030 simple sequence repeats, with primers designed for 522 microsatellite loci. Twenty-one microsatellite loci were tested with 11 showing reliable amplification and polymorphism in K. senegalensis. The 11 novel microsatellites, together with one previously published, were used to assess 73 accessions belonging to the Australian K. senegalensis domestication program, sampled from across the natural range of the species. STRUCTURE analysis shows two major clusters, one comprising mainly accessions from west Africa (Senegal to Benin) and the second based in the far eastern limits of the range in Sudan and Uganda. Higher levels of genetic diversity were found in material from western Africa. This suggests that new seed collections from this region may yield more diverse genotypes than those originating from Sudan and Uganda in eastern Africa.     

Cryptic speciation and paraphyly in the cosmopolitan bryozoan Electra pilosa--impact of the Tethys closing on species evolution

Cosmopolitan nature of the marine bryozoan Electra pilosa was studied to clarify geographic structure and to outline evolution and phylogeography of the species. Several local populations from the Northeast Atlantic (North Sea and Baltic Sea), Arctic (Barents Sea and White Sea) and Indo-West Pacific (New Zealand) were compared. In addition, we examined the closely related species E. posidoniae from the Mediterranean Sea. Phylogenetic analysis based on both 16S and 18S rDNA indicate that the Indo-West Pacific E. pilosa is a sister species to the Atlantic-Mediterranean clade, with the latter including the species E. posidoniae and the Atlantic population of E. pilosa. The topology of the phylogenetic tree leads us to conclude that E. pilosa is a paraphyletic species group relative to E. posidoniae, and a molecular dating of its divergence is consistent to geologic events associated with the closure of the Tethys Sea.     

Development and characterization of microsatellite loci for Khaya senegalensis (Meliaceae)1

? Premise of the study: Microsatellite loci were developed to characterize genetic variation and population subdivision in Khaya senegalensis (Desr.) A. Juss. (Meliaceae). ? Methods and Results: Microsatellite loci were identified from genomic DNA sequences generated using the 454 GS-FLX titanium platform. Primers were designed for 67 tri- and tetranucleotide repeats, of which 20 were selected for 2 multiplexes based on amplification success and band size. Eleven of these loci showed polymorphism in two populations of Khaya senegalensis and amplified in individuals from across the species range. ? Conclusions: These new microsatellite loci will be useful for investigation of the evolutionary and conservation genetics of Khaya senegalensis.