分支系统学简介

分支系统学是本世纪70年代以来发展起来的一个新的系统学派。本文扼要地介绍了分支系统学的创立、历史和发展,分支系统学的基本概念、特征分析法以及分支系统学的广泛应用给现代生物系统学所带来的广泛影响和冲击。     

分支系统学简介

分支系统学是本世纪70年代以来发展起来的一个新的系统学派。本文扼要地介绍了分支系统学的创立、历史和发展,分支系统学的基本概念、特征分析法以及分支系统学的广泛应用给现代生物系统学所带来广泛影响和冲击。     

蓝藻的分子系统学研究

藻类分子系统学是一门新兴的学科。介绍了蓝藻分子系统学的发展、定义和蓝藻分子系统学的研究方法,并举例说明了各种方法的应用。同时,对蓝藻分子系统学发展前景作出了展望。     

膜蕨科系统学研究进展

从形态学和解剖学、细胞染色体、植物化学及分子系统学等方面入手,综述了膜蕨科植物系统学的研究进展,旨在为今后膜蕨科植物系统学的深入研究提供参考。     

分支系统学当前的理论和方法概述及华东地区山胡椒属十二个种的分支系统学研究

本文概述了当前分支系统学研究中涉及的主要理论和方法,包括性状的选取、性状状态和极性的确定、数据矩阵的分析计算、结果分支图的处理、分支图可靠性的评价及分支图的应用。本文同时以华东地区樟科山胡椒属Linderal2个种的分支系统学研究为例,讨论了用形态性状进行分支系统学研究中可能遇到的问题,也揭示了一些分支系统学与传统的系统学在应用性状推导进化关系上的不同点。对这12个种的分支系统学研究得出了一些不同于传统系统学方法所推测的山胡椒属内的系统发育关系,如分支系统学研究显示山胡椒组和球果组很近缘。在严格一致性分支图上,杯托组的黑壳楠和江浙山胡椒分别位于最原始和最进化的分支,表明这个组是复系类群。分支图也显示山胡椒组可能是复系类群。     

核基因序列在昆虫分子系统学上的应用

核基因中含有更加丰富的生物学信息,运用核基因序列或将核基因序列与线粒体基因序列相结合研究昆虫的系统发育正成为分子系统学领域的一种发展趋势.核糖体基因中18S rDNA、28S rDNA、ITS已在昆虫分子系统学中得到了广泛的应用.与核糖体基因相比,虽然编码蛋白的核基因应用于昆虫分子系统学的种类不少,但大部分都是应用于双翅目和鳞翅目昆虫的分子系统学研究中,能够成功地普遍用于多个目昆虫的系统学研究的核基因并不多.本文简要介绍了应用于昆虫分子系统学的核中核糖体基因和编码蛋白的核基因,并分析了核基因序列在分子系统学应用上的局限性和应用前景.     

分支系统学当前的理论和方法概述及华东地区山胡椒属十二个种的…

本概述了当前分支系统学研究中涉及的主要理论和方法,包括性状的选取、性状状态和极性的确定、数据矩阵的分析计算、结果分支图的处理、分支图可靠性的评价及分支图的应用。本同时以华东地区樟科山胡椒属Ｌｉｎｄｅｒａ１２个种的分支系统学研究为例,讨论了用形态性状进行分支系统学研究中可能遇到的问题,也揭示了一些分支系统学与传统的系统学在应用性状推导进化关系上的不同点。对这１２个种的分支系统学研究得出了一些不同     

生物系统学面临的难题

随着对生物多样性和可持续发展的全球性关注,对生物系统学的需求愈来愈大。但许多决策者认为生物系统学是一门古老的学科,谁都可以成为分类学家。这严重地影响了生物系统学的发展。论述生物系统学面临的重大科学问题。包括概念、目标和技术等问题,有利于澄清对生物系统学的一些误解,推进学科的发展,为发挥生物系统学的基础与支撑作用营造一个健康的环境。本文提出了生物系统学的六个科学难题：物种定义是概念难题,物种数量和物种间的相互关系是跨世纪的目标难题,信息管理和鉴定手段是两上技术问题,生物系统学家逐渐减少是一个社会性难题。     

核基因在两栖爬行动物分子系统学中的研究进展

从DNA水平探索生物进化的理论、生物类群的演化历史具有重要的意义,应用DNA序列研究生物的系统发育和进化规律成为当前分子系统学研究的热点,与线粒体DNA相比,核基因由于包含有更加丰富的生物学信息,运用核基因序列或将核基因序列与线粒体基因序列相结合研究两栖爬行动物的系统发育,正成为分子系统学领域的新的发展趋势.Rag-1、Rag-2、tyrosinase、rhodopsin、C-mos等核基因已在两栖爬行动物分子系统学中得到了广泛的应用.由于目前的技术手段等诸多因素,限制了更多的核基因用于两栖爬行动物分子系统学研究.为此简要介绍了目前核基因在两栖爬行动物分子系统学方面的研究进展,并分析了核基因序列在分子系统学应用上面临的问题和应用前景.     

我国放线菌系统学研究历史、现状及未来发展趋势

放线菌系统学是以实现对放线菌进行分类、鉴定、命名为目标的基础学科, 因此它是放线菌资源研究和开发利用的重要理论基础。自20世纪50年代起, 我国放线菌系统学的奠基人阎逊初院士及同事们就开创了我国放线菌系统学的研究, 经过近六十年、几代人的艰苦努力, 我国放线菌系统学工作者在国际微生物系统学权威杂志(International Journal of Systematics and Evolutionary of Microbiology, IJSEM)发表的有关放线菌新分类单元的论文数量连续十年排名稳居前列, 部分学者在国际上发表的某些改良的分类技术和新修订的分类系统等为国际同行所广泛采用, 这些均标志着我国放线菌系统学研究在国际上已成为微生物系统学界的一支重要力量。本文全面介绍了我国放线菌系统学研究的发展历程, 同时对其发展现状给予理性分析, 并就未来发展方向进行了展望。     

The simple-septate basidiomycetes: a synopsis

The simple-septate basidiomycetes comprise more than 8,000 species that show a high morphological and ecological heterogeneity. To gain insight in the phylogenetic relationships within this group, we compared several ultrastructural features such as septal pore apparatus, form, and behavior of the spindle pole bodies, types of host–parasite interaction, presence or absence of colacosomes, symplechosomes, atractosomes, and cystosomes as well as nuclear rDNA sequences coding for small- and large-subunit rRNA. Based on our integrated analysis, we propose a new classification system for the simple-septate basidiomycetes with the subphylum Pucciniomycotina and the classes Agaricostilbomycetes, Atractiellomycetes, Classiculomycetes, Cryptomycocolacomycetes, Cystobasidiomycetes, Microbotryomycetes, Mixiomycetes, and Pucciniomycetes. We also propose the pucciniomycotinous taxa Cystobasidiales, Erythrobasidiales, Helicobasidiales, Mixiales, Naohideales, Pachnocybales, Spiculogloeales, and Kondoaceae and the new subphyla Agaricomycotina (equivalent to the current Hymenomycetes) and Ustilaginomycotina (equivalent to the current Ustilaginomycetes).     

Epididymal compounds and their influence on the metabolism and survival of spermatozoa

Epididymal fluid, which is derived from testicular fluid, contains several unusual compounds. Little information is available on the composition of the testicular fluid of primates, but the fluid of the ram, bull, boar, and rat contains high concentrations of inositol and certain amino acids. Analyses have been made of epididymal fluid collected from the cauda epididymis of the Rhesus monkey and several nonprimate species (e.g., ram, bull, dog, stallion, rabbit, guinea pig, rat, and hamster), but similar information on the human is lacking. Cauda epididymal fluid appears to be similar in composition from one mammalian species to another. However, the epididymal plasma differs considerably from blood, lymph, and other extracellular fluids. The environment of spermatozoa in the epididymis is, therefore, highly specialized, and presumably in some way contributes to the prolonged survival of spermatozoa in this organ, and provides substrates for the metabolism of the spermatozoa. The chief characteristics of the cauda epididymal plasma are the low concentration of inorganic ions and the high levels of several unusual organic constituents namely, glycerylphosphorylcholine, carnitine, sialic acid, amino acids, glycosidases, and phosphatases. At least one antifertility compound, namely, orally administered α-chlorohydrin, appears to be concentrated in the epididymis. Studies on laboratory animals, domestic species, and man, suggest that it inhibits enzymes of the glycyolytic pathway in spermatozoa, and this may be the basis for its antifertility activity.     

Comparative morphology and evolutionary pathways of the mouthparts in spore-feeding Staphylinoidea (Coleoptera)

This study surveys the external morphology of the mouthparts in the guild of spore‐feeders among the coleopterous superfamily Staphylinoidea, evaluating the influence of different phylogenetic and ecological starting points on the formation of their mouthparts. Our emphasis is on a scanning electron microscope analysis (SEM) of the involved trophic structures in spore‐feeding larvae and adults of the Ptiliidae, Leiodidae and Staphylinidae, describing the fine structure of their main functional elements. Functionally, mouthpart structures resemble brushes, brooms, combs, rakes, rasps, excavators, knives, thorns, cram‐brushes, bristle troughs, blocks and differently structured grinding surfaces. Their different involvement in the various aspects of the feeding process (i.e. food gathering, transporting, channelling and grinding) is deduced from our SEM analyses plus direct video observations. We infer five different patterns of food transport and processing, discriminating adults of ptiliids, leiodids plus staphylinids (excluding some aleocharines), several aleocharine staphylinids, and the larvae of leiodids and staphylinids. The structural diversity of the mouthparts increases in the order from (1) Ptiliidae, (2) Leiodidae towards (3) Staphylinidae, reflecting the increasing systematic and ecological diversity of these groups. Comparisons with non‐spore‐feeders show that among major lineages of staphylinoids, shifts from general microphagy to sporophagy are not necessarily constrained by, nor strongly reflected in, mouthpart morphology. Nevertheless, in several of these lineages the organs of food intake and grinding have experienced particular fine‐structural modifications, which have undergone convergent evolution, probably in response to specialized mycophagy such as spore‐feeding. These modifications involve advanced galeal rakes, galeal or lacinial ‘spore brushes’ with arrays of stout bristles, reinforced obliquely ventrad orientated prosthecal lobes and the differentiations of the molar grinding surfaces into stout teeth or tubercles. In addition, several staphylinids of the tachyporine and oxyteline groups with reduced mandibular molae have evolved secondary trituration surfaces, which in some aleocharines are paralleled by considerable re‐constructions of the labium–hypopharynx.     

略论棕榈科与新分出的省藤科的系统分类、演化、区系地理及主要的经济用途

棕榈科原省藤亚科因其子房壁及外果皮被倒生、螺旋状排列的鳞片所覆盖,而区别于其他亚科,因而独立分出成一新科--省藤科。作者讨论了棕榈科的祖先种可能在石炭纪时,自原始裸子植物开以顿目在分化、衍生出苏铁目祖先种的进化干上,于白垩纪时分化出的一个分支。在棕榈科的祖先种出现不久后,在其进化的分支上,于白垩纪后期又分化出一旁支,成为棕榈科的姊妹科--省藤科的祖先种。从两祖先种分别再分化、衍生出现今分布地球上该二科的属与种。两科、尤其前者是被子植物、尤其是单子叶植物中最原始的类群之一。作者还提出棕榈科象牙椰亚科与贝叶棕亚科是该科最原始或较原始的两类群;槟榔亚科和腊材榈亚科是较进化的两类群;而水椰亚科祖先种可能源于象牙椰亚科的祖先种,但又演化为该科最进化与特化的类群。省藤科省藤亚科略比鳞果榈亚科原始。作者讨论了两科为泛热带分布的科,指出两科的"现代分布区"在南北两半球热带地区,少数种还延伸分布到两半球暖亚热带、甚至达中亚热带地区,分布区边缘最北达日本中部、中国长江流域及黄河下游的南部,美国加利佛尼亚州与佛罗里达州和地中海北部;最南达智利中部和新西兰南部;而"现代分布中心"在热带与暖亚热带的亚洲,中、南美洲,大洋洲及非洲的东、南、西部;但分布区的"密集中心"则在热带亚洲、热带中及南美洲、南太平洋群岛及非洲东南部。作者还介绍了近50年我国南方引种驯化成功的两科植物近400种(见^*图谱),其中少数为耐寒的种类,有的种已引种到长江流域或更北的地区。引种的大部分种都有其重要的经济用途,包括:1. 食用,如淀粉和树液可制"西米"或制糖,酿酒、醋或作饮料;果或种子榨油,供食用或工业用;某些种的嫩芽作蔬菜,甚至种子代咖啡饮用;2. 药用,有消炎、止血、活血、驱虫、抗癌等用;3. 建筑、工艺与日用品,包括不少种的树干供建普通房子、桥梁、小船;少数种可提制工业用蜡;许多种的纤维制高级缆绳和编织品;还制工艺品与日用品等;4. 代表热带景观的园林工程、绿化及美化环境的观赏树和人行道树及建造园林景观生态类型的树种等。     

Taxonomy of the Genus Oreocharis (Gesneriaceae)

The genus Oreocharis as circumscribed here consists of 27 species including 5 varieties, of which 5 species and 4 varieties are described as new in the present paper. In the work analysed were the external morphology and geographic distribution and examined under SEM were pollen exine of 22 species and seed coat of 16 species. As a result, three types of the corolla, two types of the anther, three types of the pollen exine and three types of the seed coat are distinguished here in the paper. It is discovered that the corolla in the genus is relatively stable, though diverse, and highly correlated with the characters of pollen grains and seeds. The corolla clearly bilabiate but constricted at the throat, occurring in O. auricula, O. cordatula, O. aurantiaca, etc., for an example, is correlated with smooth, reticulate pollen exine and partial tectum and the reticulate and smooth seed coat. For this reason the subdivision of the genus in the paper is mainly based on the characters of the corolla, but combined with those of the anther, pollen and seed coat. The genus is divided into four sections in the present classification. Dasydesmus Craib, based on a single species. O. bodinieri, is reduced here, and the reasons are given. The genus is distributed mainly in the subtropics, and less frequently in the tropics, of China south of 32.5°N and east of 98.5°E, with only two species beyond the border, O. hirsuta in Thailand (only a single locality in Chiengmai) and O. aurea also found in north Vietnam (see Fig. 1, Table 3). Sect. 1. Stomactin (Clarke) Fritsch. Corolla urceolate-tubular, constricted at the throat, with limb distinctly bilabiate; anthers broad-oblong; seed coat reticulate, smooth, rarely minutely tuberculate; pollen exine fine-reticulate, tectum partial and smooth, luminae slightly unequal in size. Sect. 2. Orthanthera K. Y. Pan Corolla campanulate or campanulate-tubular; anthers broad-oblong; seed coat reticulate, muri smooth, rarely spiny-processed; pollen exine fine-reticulate, with partial and smooth tectum and luminae slightly unequal in size, rarely exine insular and fine-tuberculate, tectum perforate. Setc. 3. Oreocharis Corolla thin-tubular; anthers broad-oblong; seed coat densely spinyprocessed, rarely fine-tuberculate; pollen exine insular, densely spiny-processed, rarely finereticulate and smooth, luminae unequal in size. Sect. 4. Platyanthera K. Y. Pan Corolla campanulate; anthers hippocrepiform; seed coat densely spiny-processed; pollen exine fine-reticulate, tectum perforate, luminae small, nearly equal in size. In the section Stomactin, although the constriction of corolla at its throat is a specialized character, the characters of seed coat, pollen grains and anthers are apparently primitive. Therefore it may be said at least that more primitive characters are preserved in the section. In the section Oreocharis, on the contrary, the characters of corolla, seed coat and pollen exine are all advanced. And in the section Platyanthera, the seed coat, pollen (with perforate tectum) and anthers have developed rather specialized characters.     

Benthic foraminiferal assemblages of the Middle and Upper Jurassic sediments from the northeastern Alborz and western Koppeh Dagh,Iran: Systematic palaeontology and palaeoecology

This research is focused on a poorly studied Jurassic sequence in the eastern part of Alborz and Western Koppeh Dagh basins. The foraminifera are reported from Callovian (Middle Jurassic) to Tithonian (Upper Jurassic) sediments of the Farsian and Chaman Bid formations. The benthic foraminiferal associations belong to the families Ammodiscidae, Epistominidae, Hauerinidae, Hormosinidae, Ichthyolariidae, Lagenidae, Nodosariidae, Nubeculariidae, Ophthalmidiidae, Polymorphinidae, Rhabdamminidae, Saccamminidae, Spirillinidae, Spirocyclinidae, Textulariidae, Trocholinidae, and Vaginulinidae. In the studied area, the foraminifera are dominated by the families Nodosariidae, Vaginulinidae and Epistominidae. Palaeoecological analysis of the foraminiferal assemblages from the Farsian Formation indicates that these sediments were deposited on the inner to mid shelf environment, with normal salinity (euhaline), and relatively well oxygenated waters, with eutrophic conditions in the Goznawwi area and oligotrophic conditions in the Chaman Bid area. The foraminiferal assemblages in this study are the first record from Jurassic sediments of the eastern part of the Alborz and Koppeh Dagh basins in northern Iran.     

Physico-chemical environment in Tjeukemeer with special reference to speciation of algal nutrients

This paper attempts to generalize the major controlling factors and their impacts on the physico-chemical environment in Tjeukemeer in relation to the speciation of algal nutrients.Morphometry, man-made hydrology, climate, chemistry of drainage area and biology of the lake appear to control its physico-chemistry the most. Thus the shallow Tieukemeer is vulnerable to wind and therefore almost always completely mixed and often turbid owing to resuspended sediments. In normal summers the lake is oligohaline, hard, eutrophic and alkaline, and in winter it is hard, eutrophic, alkaline and humus-rich. The implications of these properties on the following physico-chemical components and their relevance for the speciation of algal nutrients are discussed: turbidity, colour, halinity, pH, alkalinity, salinity, conductivity, ionic composition, ionic balance and organic matter.Because of the relationships between the physico-chemical environment on the one hand and the speciation and bio-availability of nutrients on the other hand, special attention is given to the speciation of some major and minor elements as derived from ultra filtration experiments. In this context, the metal binding capacity of the organic matter (mainly fulvic acids) is also considered.     

Effects of Microbial and Other Antagonistic Organism and Competition on Entomopathogenic Nematodes

Antagonistic factors, broadly identified as antibiosis, competition and natural enemies, impact on entomopathogenic nematodes. Antibiosis can occur through the release of plant chemicals from the roots into the soil, which may adversely affect the host-finding behavior of the infective stage nematode, or the presence of these chemicals in the host insect may negatively affect nematode reproduction. In laboratory studies, intra-specific and inter-specific competition reduces nematode fitness, and inter-specific competition can cause local extinction of a nematode species. For example, after concomitant infection of a host, a steinernematid species usually excludes a heterorhabditid species. The mechanism for the steinernematid superiority has been postulated to be a bacteriocin(s) produced by Xenorhabdus, the symbiotic bacterium of the steinernematid, which prevents Photorhabdus, the symbiotic bacterium of the heterorhabditid, from multiplying. Inter-specific competition between two steinernematid species shows that both can co-exist in a host, but one species will eventually prevail in the environment. By having different foraging strategies, however, both steinermatid species may co-exist in the same habitat. An important issue is whether the introduction of an exotic entomopathogenic nematode species will competitively displace an indigenous nematode species. Although the environmental risks are small, the recommended policy is that the introduction of exotic nematodes be regulated. With other pathogens, entomopathogenic nematodes can out-compete entomopathogenic fungi, but not Bacillus thuringiensis, for the same host individual when both the nematode and entomopathogen are applied simultaneously. The best studied natural enemy is the nematophagous fungus, Hirsutella rhossiliensis, which causes higher mortality in Steinernema glaseri compared with Heterorhabditis bacteriorphora. Differential susceptibility to the fungus may be associated with the retention of the second-stage cuticle by H. bacteriophora. Invertebrate predators including mites and collembolans feed on entomopathogenic nematodes. Although a number of studies have been conducted with antagonists, there is a dearth of field data. We suggest that long-term research plots be established where natural populations of entomopathogenic nematodes occur and include antagonists as a component of such studies.     

Tissue specific protochlorophyll(ide) forms in dark-forced shoots of grapevine (<Emphasis Type="Italic">Vitis vinifera</Emphasis>L.)

Cuttings of grapevine (Vitis vinifera L. cv. Chardonnay) were dark-forced at least three weeks. Pigment contents, 77 K fluorescence emission, excitation spectra of the leaves, petioles, stems, transmission electron micrographs of the etioplasts from leaves, the chlorenchyma tissues of the stems were analysed. The dark-grown leaves, stems contained 8 to 10, 3 to 5 μg/g fresh weight protochlorophyllide, its esters, respectively. HPLC analysis showed that the molar ratio of the unesterified, esterified pigments was 7:3 in the shoot developed in darkness. The dark-forced leaves contained carotenoids identified as: neoxanthin, violaxanthin, antheraxanthin, lutein, β-carotene. Detailed analyses of the fluorescence spectra proved that all tissues of the dark-forced shoots had protochlorophyllide or protochlorophyll forms with emission maxima at 628, 636, 644, 655, 669 nm. The 628, 636 nm emitting forms were present in all parts of the dark-forced shoot, but dominated in the stems, which may indicate an organ specificity of the etioplast development. Variations in the distribution of the pigment forms were even found in the different tissues of the stem. The subepidermal layers were more abundant in the 655 nm form than the parenchyma cells of the inner part of the cortex, the pith. In the latter cells, the plastid differentiation stopped in intermediary stages between proplastids, etioplasts. The plastids in the subepidermal layers had developed prolamellar body structures, which were similar to those of etiolated leaves. The results highlight the importance of organ-, tissue specificity of plastid differentiation for chlorophyll biosynthesis, greening of different plant organs. This revised version was published online in June 2006 with corrections to the Cover Date.