Global meta‐analysis of wood decomposition rates: a role for trait variation among tree species?

The carbon flux from woody debris, a crucial uncertainty within global carbon-climate models, is simultaneously affected by climate, site environment and species-based variation in wood quality. In the first global analysis attempting to explicitly tease out the wood quality contribution to decomposition, we found support for our hypothesis that, under a common climate, interspecific differences in wood traits affect woody debris decomposition patterns. A meta-analysis of 36 studies from all forested continents revealed that nitrogen, phosphorus, and C : N ratio correlate with decomposition rates of angiosperms. In addition, gymnosperm wood consistently decomposes slower than angiosperm wood within common sites, a pattern that correlates with clear divergence in wood traits between the two groups. New empirical studies are needed to test whether this difference is due to a direct effect of wood trait variation on decomposer activity or an indirect effect of wood traits on decomposition microsite environment. The wood trait–decomposition results point to an important role for changes in the wood traits of dominant tree species as a driver of carbon cycling, with likely feedback to atmospheric CO₂ particularly where angiosperm species replace gymnosperms regionally. Truly worldwide upscaling of our results will require further site-based multi-species wood trait and decomposition data, particularly from low-latitude ecosystems.     

What drives the species richness patterns of non‐volant small mammals along a subtropical elevational gradient?

The biodiversity of non‐volant small mammals along an extensive subtropical elevational gradient was studied for the first time on Gongga Mountain, the highest mountain in Hengduan Mountain ranges in China, located in one of the 25 global biodiversity hotspots. Non‐volant small mammals were replicate sampled in two seasons at eight sampling sites between 1000 and 4200 m elevation on the eastern slope of Gongga Mountain. In all, 726 individual small mammals representing 25 species were documented in 28 800 trap nights. The species richness pattern for non‐volant small mammals along the elevational gradients was hump‐shaped with highest richness at mid‐elevations. However, different richness patterns emerged between endemic and non‐endemic species, between larger‐ranged and smaller‐ranged species and between rodents and insectivores. Temperature, precipitation, plant species richness and geometric constraints (mid‐ domain effect) were most significant in explaining species richness patterns. Based on the analysis of simple ordinary least squares (OLS) and stepwise multiple regressions, the overall richness pattern, as well as the pattern of insectivores, endemic species and larger‐ranged species showed strong correlation with geometric constraint predictions. However, non‐endemic species richness was more strongly correlated with temperature, while rodent richness was correlated with plant species richness. Our study shows that no single key factor can explain all richness patterns of non‐volant small mammals. We need to be cautious in summarizing a general richness pattern of large species groups (e.g. small mammals or mammals) from species in smaller groups having different ecological distributions and life histories. Elevational richness patterns and their driving factors for small mammals are more likely dependent on what kind of species we study.     

The role of soil-borne fungi in driving the coexistence of Pinus massoniana and Lithocarpus glaber in a subtropical forest via plant–soil feedback

亚热带森林土壤真菌类群对马尾松和石栎物种共存的驱动机制 植物-土壤反馈(plant–soil feedback, PSF)是促进森林生态系统物种共存和多样性维持的关键机制之一。大量证据表明大树周围具有物种特异性的土壤病原菌对其同种幼苗的存活和生长具有明显的抑制作用,而对于异种幼苗更新的影响则相对较弱。然而,时至今日我们仍然未能全面解读PSF这一影响 的内在生物学机制。本研究通过对我国亚热带常绿落叶阔叶林常见树种——马尾松(Pinus massoniana)和石栎(Lithocarpus glaber)开展交叉接种盆栽试验,探讨PSF过程对目标树种共存的作用机制。盆栽实验所用接种土壤取自天然林地两种目标树种林冠下的表层土壤,分别检测来源于同种大树和异种大树的接种土壤对马尾松和石栎幼苗存活和生长的影响。同时,通过杀菌处理评估不同土壤真菌功能类群,尤其是土壤病原真菌类群在PSF过程中的相对重要性。研究结果表明,石栎幼苗在接种异种大树土壤的情况下生长更好,而马尾松幼苗并未受到接种土壤来源的影响。然而,进行杀菌处理之后,在接种同种大树土壤的盆栽中石栎幼苗的长势更优于接种异种土壤的幼苗,说明土壤真菌类群是调控其PSF过程的关键环节。该研究验证了土壤病原真菌和菌根真菌类群是PSF过程重要的驱动因素,而PSF过程通过调控石栎幼苗的存活和生长,从而促进石栎树种与马尾松树种在群落中的共存。     

Breaking the boundary — The key to bottom recovery? The role of mysid crustaceans in oxygenizing bottom sediments

Large areas of the Baltic Sea bottoms suffer from low oxygen conditions and anoxia, impoverishing the benthic macrofauna. The important macrofaunal function bioturbation, which improves the transport of oxygen into the sediment does not occur in an absence of benthic macrofauna. The objective of this study was to investigate if a semi-pelagic species, like the mysid crustacean Mysis relicta, is able to improve the oxygen conditions of the sediment and thereby acts as a facilitator for re-colonization of azoic sediments by benthic species. We also wanted to study the potential of M. relicta in breaking the diffusive boundary layer under varying degrees of oxygen deficiency. Three types of sediment qualities were used to mimic the severity of oxygen deficiency. Under normoxia, moderate hypoxia (40% O₂) and hypoxia, (20% O₂) M. relicta's bioturbation activity was studied by recording oxygen profiles in sediments with and without mysids. In normoxia the mysids were able to oxygenize the sediment independent of sediment quality. The results show that mysids are able to bioturbate the sediment to some extent in hypoxia independent of the sediment quality. In all treatments with mysids the diffusive boundary layer was more or less completely broken down. In normoxia treatment with sediment of very low quality the mysids prevented growth of the sulphur bacteria Beggiatoa spp. which usually occurs on anoxic bottoms. The ability of this semi-pelagic species to improve benthic oxygen conditions can be seen as an important first step in re-colonization by real benthic species.     

What shapes intra‐specific variation in home range size? A case study of female roe deer

Spatial distribution in mammals, and thereby home range size, is influenced by many different factors including body size, sex, age, reproductive status, season, availability of forage, availability of water, fragmentation of landscape, trophic level and intra- and inter-specific competition. Using linear mixed models, we looked for factors shaping the variation in size of spring-summer and winter home ranges for 51 radio-collared adult female roe deer at Trois Fontaines forest, Champagne–Ardenne, France (1996–2005). Home range size of females was larger in winter than in spring–summer, decreased with age, and decreased with increasing quality. Females in low quality areas adjusted the size of their home range to include more patches of habitat so that all female deer obtained similar amounts of food resources (total biomass of 6.73±2.34 tons (mean±SE) for each home range). Such adjustments of home range size in response to patchiness of resources led to marked between-female variation in home range size. Our results demonstrate that roe deer females have different tactics of habitat use according to spatial variations in habitat quality so that females get similar food resources in highly productive environments such as the Trois Fontaines forest.     

Is there an influence of historical events on contemporary fish species richness in rivers? Comparisons between Western Europe and North America

Freshwater fish species richness on 132 West European and North American rivers is analysed using eleven variables related to contemporary ecology (nine) and history (two). This is done in order to examine the relative and joint effects of both historical and ongoing processes on the contemporary richness of these two regional fish faunas. Relationships are quantified by simple and stepwise multiple regression procedures. Species-area curves are presented for the fish faunas within both continents. We show that ecological factors statistically explain most of the variation in freshwater fish species richness for both continents. Effects of historical factors are shown to be statistically significant, but add only a little to the variance already explained by ecological factors. Our analyses further indicate that rivers (which flow directly into the ocean) support fewer species of fish than do similarly sized tributaries. The immigration-extinction hypothesis appears to provide a plausible explanation for this observed pattern. The fact that in our final model, a continental effect is still highly significant, leads us not to exclude the possibility of some other historical influences in generating different overall species richness levels on the two continents.     

The role of the Weberian Reform in European Rubus research and the taxonomy of locally distributed species – which species should we describe?

After Sudre published his treatment of European Rubi in the early 20th century, Rubus taxonomy in Europe suffered from a scholastic phase and a longer period of stagnation. The so‐called ‘Weberian Reform’ initiated the necessary revival of European batology. It rests on four major pillars: 1) mapping projects over larger areas, 2) evaluation of type material, 3) visits to loci classici, and 4) evaluation of the status of species by means of their distribution areas. Subsequently, it has become widely accepted in European batology that only species with a distribution area over 50 km should be described. Although this pragmatic species concept has been useful in making a continent‐wide overview of brambles, we argue that it is lacking a scientific basis, and should thus be rejected. There are at least four distinctive problems when treating locally distributed brambles: 1) primary hybrids, 2) locally distributed stabilised apomicts, 3) intraspecific variation in species with a larger distribution range, and 4) unstabilised swarms of hybridogenic biotypes and the derivates thereof (mainly in the montane regions). When facing the problems in Rubus systematics, we argue that all independently evolving lineages should be described as species, including apomictic lineages with very small distribution ranges, both from the mountain‐dwelling glandular series and from the lowlands. Neither primary hybrids (which are not stabilised by apomixis), nor biotypes without an independent and coherent distribution area are independently evolving lineages, and should thus not be described as species. We advocate a restrained attitude when describing new species with limited distribution areas.     

The response of Puccinellia maritima to burial: A key to understanding its role in salt‐marsh dynamics?

Abstract. The plant and sediment dynamics in salt marshes are strongly interrelated, but few data are available to document their interaction. Puccinellia maritima is a perennial grass that occurs widely in salt marshes and this study examines its role in the stabilization or trapping of sediment in the pioneer zone and its response to burial, a characteristic phenomenon in accreting salt marshes. Puccinellia not only appears to limit erosion but also to significantly enhance accretion. The functional role of this species is largely dependent on the local disturbance regime. The response of Puccinellia to burial was studied in a series of burial treatments. Growth performance of Puccinellia was stimulated by burial of 4 mm sediment and reduced by burial of 8 mm/month. Burial under 12 mm of sediment led to high mortality of up to 97%. Response was determined by the instantaneous thickness of sediment rather than by the total quantity. Morphological response to burial consisted mainly of stem elongation. Plants collected from accretion zones in the field also produced tillers with adventitious roots at successive soil layers. The range of burial tolerances found for Puccinellia fits well with its occurrence in locations with up to 8 mm sediment accretion per tidal cycle, a common situation in the salt marsh studied.     

Partial self‐incompatibility in the polyploid endemic species Scalesia affinis (Asteraceae) from the Galápagos: remnants of a self‐incompatibility system?

Different pollination treatments of capitula were used to examine the breeding system of individuals of the tetraploid endemic species Scalesia affinis from the Galápagos Islands. All types of crossings resulted in approximately 35 achenes per capitulum, but in actively and passively self-pollinated capitula these were mostly without embryos. Among self-pollinated individuals a large variation was found in the production of embryos. Some individuals failed completely to set filled achenes while others produced few or many. Additionally, we found a clear difference in female phenology of florets in self-pollinated capitula compared with florets in cross-pollinated capitula. Female florets in self-pollinated capitula remained receptive for longer time. These results suggest that Scalesia affinis is partly self-incompatible. Outcrossing is assured by the endemic carpenter bee, Xylocopa darwini , which proved to be an important pollinator of Scalesia affinis . Nevertheless, geitonogamy seemed to be considerable in the focal population, for which reason open pollinated capitula produced fewer achenes than controlled outcrossed capitula.  © 2003 The Linnean Society of London, Botanical Journal of the Linnean Society , 2003, 142 , 93–101.     

Lymph node fine‐needle cytology in the era of personalised medicine. Is there a role?

The 2016 World Health Organisation revised classification of lymphoma has sub‐classified well‐defined entities and added a number of provisional entities on the basis of new knowledge on genetic, epigenetics and phenotypical data; prognostic and predictive features are also part of this classification. New knowledge on well‐defined entities further enlightens the mechanisms of lymphomagenesis, which are more complex and multifactorial than once believed. Therapies are also more complex because traditional clinical trials have been integrated with new drugs and compounds with unique mechanisms of actions against distinct molecular targets. As lymphoma acquires additional genetic and phenotypic features over the time, pathological assessment is also necessary. Histological evaluation and tissue collection by surgical biopsies are necessary for phenotypical and molecular purposes; however, these are demanding procedures for both the patient and the health care system. At the same time, the choice of the best treatment for a specific entity, in different phases and different patients requires information that may not be available when the biopsy is performed. Fine needle aspiration cytology (FNAC) is successfully used in lymph nodes (LNs) in combination with different ancillary techniques and might be used to assess the phenotypic and genetic profile of specific targets and to get key information for therapy, in different phases and stages of the disease, with the option to re‐check the same target over time, without surgical excision. This brief review describes LN‐FNAC diagnostic criteria, current therapies for lymphomas and the potential role of LN‐FNAC in selecting non‐Hodgkin lymphomas patients for specific targeted treatments.     

The thioredoxin system in aging muscle: key role of mitochondrial thioredoxin reductase in the protective effects of caloric restriction?

Cellular redox balance is maintained by various antioxidative systems. Among those is the thioredoxin system, consisting of thioredoxin, thioredoxin reductase, and NADPH. In the present study, we examined the effects of caloric restriction (2 mo) on the expression of the cytosolic and mitochondrial thioredoxin system in skeletal muscle and heart of senescent and young rats. Mitochondrial thioredoxin reductase (TrxR2) is significantly reduced in aging skeletal and cardiac muscle and renormalized after caloric restriction, while the cytosolic isoform remains unchanged. Thioredoxins (mitochondrial Trx2, cytosolic Trx1) are not influenced by caloric restriction. In skeletal and cardiac muscle of young rats, caloric restriction has no effect on the expression of thioredoxins or thioredoxin reductases. Enforced reduction of TrxR2 (small interfering RNA) in myoblasts under exposure to ceramide or TNF-alpha causes a dramatic enhancement of nucleosomal DNA cleavage, caspase 9 activation, and mitochondrial reactive oxygen species release, together with reduced cell viability, while this TrxR2 reduction is without effect in unstimulated myoblasts under basal conditions. Oxidative stress in vitro (H2O2 in C2C12 myoblasts and myotubes) results in different changes: TrxR2, Trx2, and Trx1 are induced without alterations in the cytosolic thioredoxin reductase isoforms. Thus aging is associated with a TrxR2 reduction in skeletal muscle and heart, which enhances susceptibility to apoptotic stimuli but is renormalized after short-term caloric restriction. Exogenous oxidative stress does not result in these age-related changes of TrxR2.     

Is phenotypic canalization involved in the decline of the endemic Aquilegia thalictrifolia? Rethinking relationships between fluctuating asymmetry and species conservation status

Fluctuating asymmetry (FA), the deviation from the normal symmetrical condition of a morphological trait having specific morphological symmetry, increases in response to environmental and genetic stress, is related to phenotypic plasticity and is considered a tool for monitoring a species conservation status. However, FA–stress relations are dependent on measured traits or species‐specific characteristics such as mating system and habitat. This study investigates the relationships between FA, genetic diversity, population size, density and individual fitness traits (plant height, fruit and seed set), in the endemic Aquilegia thalictrifolia, a mixed breeder that is declining, but maintaining high levels of heterozygosity. Leaf and flower FA and other traits were investigated in 10 populations of A. thalictrifolia, the whole species range. As a result, we found similar patterns of FA in leaves and flowers between populations, indicating a homogenous level of stress between populations that differed for other traits. FA and the other traits were not related, including heterozygosity. Heterozygosity was not related to individual fitness traits with the exception of plant height. In accordance with other studies, we found that the role of FA as a tool for assessing the conservation status of a species or population should be reconsidered. However, we conclude that a low level of FA should not automatically be considered an indicator of good conservation status or low level of stress, because in species that evolved in highly stable environments it may indicate a scarce ability to plastically respond to environmental changes, as a consequence of environmental and genetic canalization. Further investigation of this point is needed.     

The flagellum–mitogen‐activated protein kinase connection in Trypanosomatids: a key sensory role in parasite signalling and development?

Trypanosomatid parasites are the causative agents of severe human diseases such as sleeping sickness, Chagas disease and leishmaniases. These microorganisms are transmitted via different insect vectors and hence are confronted to changing environments during their infectious cycle in which they activate specific and complex patterns of differentiation. Several studies in Trypanosoma brucei and in different subspecies of Leishmania have shed light on the role of mitogen-activated protein (MAP) kinases in these processes. Surprisingly, several MAP kinases turned out to be involved in the control of flagellum length in the promastigote stage of Leishmania . Recently, a sensory function has been recognized for cilia and flagella in unicellular and multicellular eukaryotes. This review aims to stimulate discussions on the possibility that the Trypanosomatid flagellum could act as a sensory organ through the MAP kinase pathway, with the objective to encourage investigation of this new hypothesis through a series of proposed experimental approaches.     

Are sympatrically speciating Midas cichlid fish special? Patterns of morphological and genetic variation in the closely related species Archocentrus centrarchus

Established empirical cases of sympatric speciation are scarce, although there is an increasing consensus that sympatric speciation might be more common than previously thought. Midas cichlid fish are one of the few substantiated cases of sympatric speciation, and they formed repeated radiations in crater lakes. In contrast, in the same environment, such radiation patterns have not been observed in other species of cichlids and other families of fish. We analyze morphological and genetic variation in a cichlid species (Archocentrus centrarchus) that co‐inhabits several crater lakes with the Midas species complex. In particular, we analyze variation in body and pharyngeal jaw shape (two ecologically important traits in sympatrically divergent Midas cichlids) and relate that to genetic variation in mitochondrial control region and microsatellites. Using these four datasets, we analyze variation between and within two Nicaraguan lakes: a crater lake where multiple Midas cichlids have been described and a lake where the source population lives. We do not observe any within‐lake clustering consistent across morphological traits and genetic markers, suggesting the absence of sympatric divergence in A. centrarchus. Genetic differentiation between lakes was low and morphological divergence absent. Such morphological similarity between lakes is found not only in average morphology, but also when analyzing covariation between traits and degree of morphospace occupation. A combined analysis of the mitochondrial control region in A. centrarchus and Midas cichlids suggests that a difference between lineages in the timing of crater lake colonization cannot be invoked as an explanation for the difference in their levels of diversification. In light of our results, A. centrarchus represents the ideal candidate to study the genomic differences between these two lineages that might explain why some lineages are more likely to speciate and diverge in sympatry than others.     

Reactive oxygen species,nitric oxide and glutathione: a key role in the establishment of the legume–Rhizobium symbiosis?

Reactive oxygen species are generated in the first steps of the Rhizobium–legume symbiosis. Superoxide radicals and hydrogen peroxide have been detected in infection threads and there is also evidence of the presence of nitric oxide in young alfalfa nodules. Moreover, rhizobial mutants, with a reduced antioxidant defense, exhibit an impaired capacity to nodulate. The oxidative burst generated in response to symbiotic infection can be consistent with rhizobia being initially perceived as invaders by the plant; in this framework, it may be correlated with the existence of abortive infections. However, the burst appears to be also involved in the expression of early nodulins associated with successful infections. Thus, in parallel to its involvement in defense processes, a positive role for the oxidative burst (including nitric oxide) in the establishment of the symbiotic interaction can also be proposed. The burst could trigger the expression of plant and/or bacterial genes which are essential for the nodulation process. In this framework, glutathione and homoglutathione could be key intermediates for gene expression, via the modification of the redox balance. Thus, the oxidative burst may have a dual role in the establishment of the symbiosis.     

Is fungal species richness and composition related to the occurrence of the old‐growth associated wood‐decaying Amylocystis lapponica?

Amylocystis lapponica (Romell) Singer is a widely distributed wood‐decaying polypore fungus found throughout the Northern Hemisphere. Despite its huge distribution range it occurs rather patchily and seems narrowly associated with old‐growth forest stands. Notably, it has been used as an ‘indicator species’, believed to reflect the long‐term presence of dead wood, naturalness of forest stands, and indirectly, species richness and possibly composition. In this study we focused on the last issue – whether or not there is a link between the occurrence of A. lapponica and the species richness and composition of other wood‐decaying fungi. Selecting log characteristics and microclimate as similar as possible, we compared 12 logs with and 12 logs without visible fruit bodies of A. lapponica to examine: 1) if visible fruit bodies corresponded with molecular identification of the mycelia, 2) if fungal species richness and composition of the substrate were related to A. lapponica occurrence, and 3) if A. lapponica was restricted to certain parts of the log. Fungal species were recorded by inspecting visible fruit bodies and by culture isolation and ITS sequencing from wood disc samples. Laboratory and field identification of A. lapponica had 71% correspondence, and mycelia were identified in two logs without visible fruit bodies. Twice as many fungal species were detected using ITS sequencing compared to fruit body identification. Total species richness was similar between the two log categories, but number of species per log was slightly higher in A. lapponica logs. Antrodia serialis (Fr.) Donk, and possibly also Fomitopsis pinicola (Sw.:Fr.) P. Karst. and Phellinus nigrolimitatus (Romell) Bourdot & Galzin, occurred more frequently in A. lapponica logs. Mycelia of A. lapponica were restricted to less decayed parts of the wood in the centre of the middle part of the logs.