Species composition and pattern of fish distribution in Siberia

At the end of the first half of the 20th century, 61 species and subspecies of fish, including one invader (bleak Alburnus alburnus) and 17 species—endemics of Baikal—were reported for Siberia (Berg, 1933, 1949). At the present time, in rivers, lakes, and reservoirs of Siberia, 96 fish species and subspecies are described, of which 80 are aboriginal and 16 are invaders; 33 species are endemics of Baikal. Each landscapegeographic zone of Siberia has its specific ichthyofauna: in rivers and lakes of the south of Siberia, species of boreal piedmont complex dominate; in water bodies of the steppe, forest-steppe, taiga, and southern parts of the forest-steppe zone boreal plain dominates; in the zone of tundra, arctic freshwater dominates; and in Baikal, the most part (35) of species belongs to the Baikal autochtonous complex. Most researchers, as before, distinguish in Siberia two ichthyogeographic sites—West Siberian and East Siberian—that enter the Arctic Province of the Circumpolar subregion of the Holarctic region. Baikal is considered in the rank of the suboblast of the Holarctic.     

Graylings of Baikal Lake basin (Thymallus, Thymallidae): Diversity of forms and their taxonomic status

The morphological characters, molecular-genetic features, and patterns of the dorsal fin in different subspecies and forms of Arctic grayling Thymallus arcticus populating Lake Baikal and its tributaries, Irkutsk Reservoir, and Lake Khubsugul have been studied. Three groups are discernable. The first includes the white and black Baikal graylings T. a. baicalensis, as well as the western Siberian T. a. arcticus; the second group is represented by the Kosogol grayling T. a. nigrescens, and the third is composed of T. arcticus ssp. from the Yakchii lakes (the Verkhnyaya Angara basin) with a phenotype close to graylings populating the upper reaches of the Lena River. All of them are distinguished by some morphological characters, elements of the dorsal fin pattern, and by body coloration. The populations of black Baikal graylings are genetically uniform, and their distinctions from white Baikal graylings are insignificant, which agrees with the absence of a considerable divergence of these forms by a complex of meristic characters. It is assumed that in the black and white Baikal graylings the exchange by genetic information has either ceased quite recently, or persists, although, insignificantly. Some genetic remoteness of the west Siberian grayling from Irkutsk Reservoir and Nizhnyaya Tunguska, closely related to the Baikal grayling, is recorded. The formation of the Khubsugul subspecies is possibly a result of the contact of grayling populations during the rearrangements of the river system in the last glaciation period in the upper reaches of Yenisei and Selenga in Mongolia. The habitation in the Baikal system of the Upper Lena graylings indicates a connection between the Lena and Baikal basins in the past. The results of a multivariate analysis of meristic characters and the sequences of mitochondrial DNA confirm the conclusion made by Svetovidov (1931, 1936), concerning the absence of grounds to assign a species status to the Baikal forms.     

The endemic Cladophorales (Ulvophyceae) of ancient Lake Baikal represent a monophyletic group of very closely related but morphologically diverse species

Lake Baikal, the oldest lake in the world, is home to spectacular biodiversity and extraordinary levels of endemism. While many of the animal species flocks from Lake Baikal are famous examples of evolutionary radiations, the lake also includes a wide diversity of endemic algae that are not well investigated with regards to molecular‐biological taxonomy and phylogeny. The endemic taxa of the green algal order Cladophorales show a range of divergent morphologies that led to their classification in four genera in two families. We sequenced partial large‐ and small‐subunit rDNA as well as the internal transcribed spacer region of 14 of the 16 described endemic taxa to clarify their phylogenetic relationships. One endemic morphospecies, Cladophora kusnetzowii, was shown to be conspecific with the widespread Aegagropila linnaei. All other endemic morphospecies formed a monophyletic group nested within the genus Rhizoclonium (Cladophoraceae), a very surprising result, in stark contrast to their morphological affinities. The Baikal clade represents a species flock of closely related taxa with very low genetic differentiation. Some of the morphospecies were congruent with lineages recovered in the phylogenies, but due to the low phylogenetic signal in the rDNA sequences the relationships within the Baikal clade were not all well resolved. The Baikal clade appears to represent a recent radiation, based on the low molecular divergence within the group, and it is hypothesized that the large morphological variation results from diversification in sympatry from a common ancestor in Lake Baikal.     

Ecological and genecological distinctions of a high intertidal dwarf form of Fucus distichus (L.) Powell in New England

Morphological, ecological, and genetic distinctions of a high intertidal, dwarf, non-tide pool member of the Fucus distichus (L.) Powell complex were assessed at an exposed site in southern Maine, U.S.A. Variation in plant stature from typical F. distichus ssp. edentatus (De la Pylaie) Powell to the dwarf form is continuous. On the other hand, measurements of reproductively mature plants collected throughout the eulittoral zone showed a bimodal pattern, i.e., there was a high frequency of dwarf forms (4–8 cm) and F. distichus ssp. edentatus (13–28 cm). The two forms have distinct reproductive phenologies: the dwarf plant exhibiting a unimodal reproductive maximum (fall), while F. distichus ssp. edentatus has pronounced bimodal reproductive maxima (spring and fall). Differences in stature and reproduction between the dwarf form and F. distichus ssp. edentatus were maintained when their respective progeny were grown under common environmental conditions. Thus, the differences are heritable rather than environmentally induced.     

Patterns in the diversity and endemism of extant Eocene age lineages across southern Africa

Southern Africa boasts a wealth of endemic fauna and flora, comprising both massive recent radiations such as those characteristic of the Cape flora, and solitary ancient species such as the peculiar desert gymnosperm Welwitschia. This study was undertaken to identify ancient biological lineages (tetrapod and vascular plant lineages of Eocene age or older) endemic to southern Africa, and to map their distribution across the region. Twenty‐seven (17 plant and ten animal) lineages were identified, and distribution maps were generated for each of them across 74 operational geographic units, which were then combined into total endemism and corrected weighted endemism per unit area. Total endemism peaked along South Africa's coast and Great Escarpment, but in the case of weighted endemism high values were also recorded along other portions of the Great Escarpment further north. A review of the lineages sister to southern African ancient endemic lineages showed that these are often globally widespread, and many of them differ substantially from the southern African ancient lineages in terms of morphology and ecology. The mechanisms of ancient lineage survival in the region are discussed, and their importance for conservation in southern Africa is emphasised.     

Genetic variation and population differentiation in Siberian fir Abies sibirica ledeb. inferred from allozyme markers

Genetic variation in 24 populations of Siberian fir Abies sibirica Ledeb. from the Urals, West Siberia, East Siberia, South Siberia, and the Baikal region were examined using allozyme markers. Three out of fifteen allozyme loci proved to be polymorphic. Heterozygosity H _e was 6.6–9.6%, which is substantially lower than that in other widely spread boreal conifers. Our results suggest that the Siberian fir populations are subdivided into four geographic groups: (1) the Baikal Lake group, (2) the Sayan and the Altai group, (3) the Middle and Southern Urals group, and (4) Subpolar and Northern Urals group. This pattern of geographic differentiation may be explained by the preservation of the Siberian fir during the last glacial maximum (18 000–22 000 years B.P.) in isolated refugia with subsequent recolonization of the present area. F _ST in the populations examined was 10.16%, which is comparable to the estimate for Larix sibirica (7.9%), a conifer species having a similar range and pattern of geographic population differentiation.     

Finding a new form of the grayling Thymallus arcticus (thymallidae) in the basin of lake baikal

A dwarf form of the Arctic grayling Thymallus arcticus, inhabiting a group of small lakes at the origin of the Yakchii stream, which flows into the Verkhnyaya Angara River (basin of Lake Baikal), has been found in the northeastern watershed of the Baikal and Lena basins. The form is similar to upper Lena populations in body coloration and the pattern of dorsal fin. Our comparison by meristic characters indicated that the grayling of the Yakchii Lakes is more similar to the fish from Kutima River (basin of the upper courses of the Lena River) than to the black Baikal grayling T. arcticus baicalensis. The presence in Lake Baikal of a population similar to upper Lena graylings may have three causes: (1) possible drainage from Baikal to the pra-Lena via ancient valleys of the Barguzin and the Upper Angara; (2) appearance of transit zones as a result of glacial or tectonic events during the periods of watershed development between the Baikal and Lena basins; (3) the upper Lena grayling could be an endemic of the Baikal basin which was replaced by graylings penetrating from the Yenisei basin and remained in the form of relic populations in the upper courses of certain tributaries of the northern and northeastern parts of Lake Baikal.     

Effects of grazer identity on the probability of escapes by a canopy-forming macroalga

Through their grazing activities limpets have an important role in controlling macroalgal abundance and as a result the structure and dynamics of rocky shore assemblages. Using two congeneric limpet species, with different biogeographic distributions, and whose ranges are expected to alter with climatic warming, we separated the magnitude of their grazing activity over time and the subsequent consequence for macroalgal growth.The northern/boreal limpet, Patella vulgata (L.), consistently grazed more than the southern/lusitanian limpet, P. depressa (Pennant), particularly during spring and summer when P. depressa was reproductively active. Individuals of Fucus vesiculosus (L.) that settled during this time were able to grow to a size where they escaped the grazing activities of P. depressa, resulting in mature F. vesiculosus being present in all P. depressa treatments. In contrast, P. vulgata, which was not reproductively active during this period, exhibited no reduction in its grazing activity and prevented macroalgae from growing in experimental treatments. It therefore appears that P. vulgata has a stronger role, than P. depressa, in controlling macroalgal abundance on shores of southwest Britain.We present a conceptual model highlighting the direct and indirect interactions between these two limpet species and F. vesiculosis. If as predicted, under current warming scenarios, P. depressa becomes the dominant limpet on shores of southwest Britain there will be subsequent changes in rocky shore community structure and ecosystem functioning. Our research emphasises that even closely related species with similar ecological niches can exhibit different behaviours that fundamentally alter their biological interactions with other organisms leading to idiosyncratic responses to predicted changes in climate.     

Testing two contrasting evolutionary patterns in ancient lakes: species flock versus species scatter in valvatid gastropods of Lake Ohrid

Ancient lakes have long been recognized as “hot spots of evolution” and “evolutionary theatres” and they have significantly contributed to a better understanding of speciation and radiation processes in space and time. Yet, phylogenetic relationships of many ancient lake taxa, particularly invertebrate groups, are still unresolved. Also, the lack of robust morphological, anatomical, and phylogeographical data has largely prevented a rigorous testing of evolutionary hypotheses. For the freshwater gastropod genus Valvata—a group with a high degree of endemism in several ancient lakes—different evolutionary scenarios are suggested for different ancient lakes. Lake Baikal, for example, is inhabited by several endemic Valvata taxa that presumably do not form a monophyletic group. For such an evolutionary pattern, the term ancient lake species scatter is introduced here. In contrast, for the Balkan Lake Ohrid, workers previously suggested the presence of a monophyletic group of endemic Valvata species, that is, an ancient lake species flock. Sequence data of the mitochondrial cytochrome oxidase c subunit I gene (COI) from worldwide taxa, with a strong emphasis on Balkan species, are here used to test whether the putative Ohrid Valvata endemics represent an ancient lake species flock and to study patterns of speciation both on the Ohrid and the Balkan scale. The study reveals three distinct clades of endemic Valvata in Lake Ohrid. Monophyly of these taxa, however, is rejected, and they therefore do not represent an ancient lake species flock, but rather an ancient lake species scatter. Also, in contrast to many other gastropod groups in Lake Ohrid, the valvatids apparently did not radiate. Many Valvata taxa in ancient lakes are characterized by enhanced levels of shell complexity. However, it remains unclear whether these patterns are associated with ancient lake environments per se. It is here suggested that similarities in shell structure between North American and Balkan taxa might simply be due to convergent evolution.     

The phylogeographic history of Megistostegium (Malvaceae) in the dry,spiny thickets of southwestern Madagascar using RAD‐seq data and ecological niche modeling

The spiny thicket of southwestern Madagascar represents an extreme and ancient landscape with extraordinary levels of biodiversity and endemism. Few hypotheses exist for explaining speciation in the region and few plant studies have explored hypotheses for species diversification. Here, we investigate three species in the endemic genus Megistostegium (Malvaceae) to evaluate phylogeographic structure and explore the roles of climate, soil, and paleoclimate oscillations on population divergence and speciation throughout the region. We combine phylogenetic and phylogeographic inference of RADseq data with ecological niche modeling across space and time. Population structure is concurrent with major rivers in the region and we identify a new, potentially important biogeographic break coincident with several landscape features. Our data further suggests that niches occupied by species and populations differ substantially across their distribution. Paleodistribution modeling provide evidence that past climatic change could be responsible for the current distribution, population structure, and maintenance of species in Megistostegium.     

Karyotype and morphology of Chironomus wulkeri (Diptera, Chironomidae) from Lake Baikal region

The karyotype and morphology of the Palaearctic chironomid, Chironomus wulkeri Filinkova et Belyanina 1993, inhabiting the Baikal coast were studied. The banding patterns of chromosomal arms B, C, and D are presented for the first time. The karyotype and chromosome polymorphism of Ch. wulkeri from the Baikal population have no significant difference from those in northern Sweden and the Polar Ural populations. One heterozygous inversion in arm A was found in 38% of larvae. A comparative morphological analysis of 46 quantitative characters of larvae from Baikal region and the Polar Urals showed that they did not differ from each other. However, there are some differences in the width of the ventromental plates and height of the mentum.     

Numerical analysis of the floristic composition of localities including Hierochloë(Poaceae) species in Northern Europe

Lists were made of the vascular plant species associated with Hierochloë australis (5 localities), H. odorata ssp. odorata (79 localities), H. odorata ssp. baltica (20 localities), H. hirta ssp. hirta (17 localities), H. hirta ssp. arctica (53 localities) and H. alpina ssp. alpina (5 localities). The localities were classified by the TABORD computer program to produce phytosociological tables. An ordination of localities and of selected species was also made using the ORDINA program. Significant groups of species were distinguished by using Fisher's exact test of probability. All the H. australis localities were in mixed forests. In general, the natural habitats of H. odorata spp. odorata are fens and grasslands in the mountains and on the seashores of Scandinavia, those of H. odorata ssp. baltica are on brackish-water shores of the Baltic, those of H. hirta ssp. hirta on sandy or gravelly river banks and lake-shores, and those of H. hirta ssp. arctica are on fens and grasslands in the northern boreal forests. These latter four taxa occur, in addition, in various anthropogenic, or semi-natural, disturbed and/or unstable habitats. Their scattered occurrence in S Scandinavia and C Europe is probably more related to sporadic long-distance dispersal, than to their being glacial relicts. The natural habitats of H. alpina ssp. alpina are exposed mountain heaths. It is suggested that H. odorata ssp. odorata, and possibly H. alpina ssp. alpina, survived the last glaciation in refugia off the Norwegian coast, and that H. odorata ssp. baltica and H. hirta ssp. hirta may have arisen by polyploidy within Scandinavia during the Post-glacial period. H. hirta ssp. arctica probably immigrated into Scandinavia from the east during the Post-glacial and H. australis from the south. The results are considered in relation to the views previously expressed in the literature and the analytic techniques used are discussed. This work has been supported by grants from the University of Lund, for which I am duly grateful.     

Distribution of soil-inhabiting testate amoebae along a mountain slope (Baikal Lake region, Khamar-Daban ridge, Cherskii peak)

The specific composition and distribution of soil-inhabiting testate amoebae along the Cherskii peak slope (Khamar-Daban mountain ridge, Lake Baikal region) were studied within the altitude range from 1000 to 1570 m above sea level according to the changes in biogeocenoses from birch-aspen to cedar-fir forests to cedar-fir-bush forest-tundra. One-hundred-four taxa were identified. The most common species are ubiquits with a wide geographical distribution: Trinema lineare, Euglypha levis, Euglypha rotunda, Trinema enchelys, Phryganella acropodia, Tracheleuglypha dentata, Assulina muscorum, Trinema complanatum, and Centropyxis aerophila. The species richness varies from 12 to 40 species per sample, and the abundance varies from 500 to 120000 ind. per gram of absolutely dry soil. The spatial heterogeneity of the specific composition grows with altitude, and the community composition changes. The absence of a common pattern in the cenotic changes in the communities of testate amoebae in Western Europe and the Lake Baikal region is discussed.     

The history of the formation of fish parasite fauna in lake Baikal

The fauna of fish parasites in Lake Baikal is represented by 5 faunistic complexes, namely the boreal plain, boreal submountain, arctic freshwater, Baikal, and Sino-Indian ones. The parasites of the boreal plain complex are dominant by the number of species (43 %). Hypotheses on the origin of the recent fish and parasite faunas of Lake Baikal were advanced on the base of the data on the parasite species composition and their distribution among hosts, as well as on the base of paleontological data. It is shown that invasion of new fish species and their parasites to Baikal led to the change of the composition of natural faunistic fish complexes and parasite systems. Invading fishes play the roles of intermediate and definitive hosts in parasite systems of Baikal, that led to the change of the initial structure of these systems.     

Notes on the fauna and taxonomy of the click beetles (Coleoptera,Elateridae) of Russia and neighboring countries

New data on the distribution and taxonomy of some species of click-beetles in Russia and adjacent countries are given. Several species are recorded for the first time for the following territories: Brachygonus bouyoni (Chass.), B. dubius (Plat. et Cate) and Zorochros lewisi (Schw.), for Russia; Sericus sulcipennis (Baudi), for Ukraine; Berninelsonius hyperboreus (Gyll.), Cidnopus parallelus (Motsch.), and Limonius poneli Les. et Mertl., for Kazakhstan. New interesting findings of Sericus sulcipennis and Selatosomus songoricus (Kr.) are reported. Comments on some erroneous faunistic records of several elaterids, including some species from Middle Asia, are made. The following new synonymy is established: Haterumelater fulvago (Marseul, {dy1868}) = Elater tauricola Gurjeva, 1957, syn. n. Notes on the variability of Selatosomus latus (F.) are given, and its conspecificity with S. corpulentus (Cand.) is confirmed. The external morphology and genitalia of the little known Selatosomus nanus Gur. are studied, and the systematic position of this species is discussed.     

A revision of the genus Lasianthus (Rubiaceae) in Africa, excluding Madagascar

23 species, one subspecies and three varieties have been described or named for the pan-tropical genus Lasianthus Jack (Rubiaceae) in continental Africa. In the present revision thirteen species, five subspecies and one variety are recognized; additionally two hybrids are proposed. Of the previously named taxa, the subspecies is raised to species rank whereas two species are degraded to subspecies and variety status, respectively. Five species are synonymised including two varieties, and four are left with uncertain status, including one variety. The distribution of the genus in Africa consists of two distinct elements: one component is found in the Guineo-Congolian regional centre of endemism and one in the eastern part of Afiomontane Archipelago-like regional centre of endemism. A centre of species diversity is found in Eastern Arc Mts., where six endemic species occur together with L. laxinervis and the more widespread L. kilimandscharicus. Four of the species are strict endemics of the Uluguru Mts. In addition to the presentation of the new section: Lasianthus Sectio Membranacei, sect. nov., this revision contain two hybrids from Uluguru Mts.: L. macrocalyx × pedunculatus and L. cereifizorus × pedunculatus, and following new taxa and new combinations: L. africanus ssp. biokoensis, subsp. nov.; L. africanus ssp. mayumbensis, comb. et stat. nov.; L. kilimandscharicus ssp. glabrescens, ssp. nov.; L. kilimandscharicus ssp. glabrescens var. xanthospermus, comb. et stat. nov.; L. kilimandscharicus ssp. hirsutus, ssp. nov.; L. laxinervis, stat. nov.; L. pedunculatus ssp. angustisepalus, ssp. nov.     

Molecular characterisation of two novel starch granule proteins 1 in wild and cultivated diploid A genome wheat species

Starch synthase IIa, also known as starch granule protein 1 (SGP-1), plays a key role in amylopectin biosynthesis. The absence of SGP-1 in cereal grains is correlated to dramatic changes in the grains’ starch content, structure, and composition. An extensive investigation of starch granule proteins in this study revealed a polymorphism in the electrophoretic mobility of SGP-1 between two species of wheat, Triticum urartu and T. monococcum; this protein was, however, conserved among all other Triticum species that share the A genome inherited from their progenitor T. urartu. Two different electrophoretic profiles were identified: SGP-A1 proteins of T. urartu accessions had a SDS–PAGE mobility similar to those of tetraploid and hexaploid wheat species; conversely, SGP-A1 proteins of T. monococcum ssp. monococcum and ssp. boeoticum accessions showed a different electrophoretic mobility. The entire coding region of the two genes was isolated and sequenced in an attempt to explain the polymorphism identified. Several single nucleotide polymorphisms (SNPs) responsible for amino acid changes were identified, but no indel polymorphism was observed to explain the difference in electrophoretic mobility. Amylose content did not differ significantly among T. urartu, T. monococcum ssp. boeoticum and T. monococcum ssp. monococcum, except in one accession of the ssp. boeoticum. Conversely, several interspecific differences were observed in viscosity properties (investigated as viscosity profiles using a rapid visco analyzer—RVA profiles) of these cereal grains. T. monococcum ssp. boeoticum accessions had the lowest RVA profiles, T. urartu accessions had an intermediate RVA profile, whereas T. monococcum ssp. monococcum showed the highest RVA profile. These differences could be associated with the numerous amino acid and structural changes evident among the SGP-1 proteins.     

Phylogeography of a Morphologically Cryptic Golden Mole Assemblage from South-Eastern Africa

The Greater Maputaland-Pondoland-Albany (GMPA) region of southern Africa was recently designated as a centre of vertebrate endemism. The phylogeography of the vertebrate taxa occupying this region may provide insights into the evolution of faunal endemism in south-eastern Africa. Here we investigate the phylogeographic patterns of an understudied small mammal species assemblage (Amblysomus) endemic to the GMPA, to test for cryptic diversity within the genus, and to better understand diversification across the region. We sampled specimens from 50 sites across the distributional range of Amblysomus, with emphasis on the widespread A. hottentotus, to analyse geographic patterns of genetic diversity using mitochondrial DNA (mtDNA) and nuclear intron data. Molecular dating was used to elucidate the evolutionary and phylogeographic history of Amblysomus. Our phylogenetic reconstructions show that A. hottentotus comprises several distinct lineages, or evolutionarily significant units (ESUs), some with restricted geographic ranges and thus worthy of conservation attention. Divergence of the major lineages dated to the early Pliocene, with later radiations in the GMPA during the late-Pliocene to early-Pleistocene. Evolutionary diversification within Amblysomus may have been driven by uplift of the Great Escarpment c. 5–3 million years ago (Ma), habitat changes associated with intensification of the east-west rainfall gradient across South Africa and the influence of subsequent global climatic cycles. These drivers possibly facilitated geographic spread of ancestral lineages, local adaptation and vicariant isolation. Our study adds to growing empirical evidence identifying East and southern Africa as cradles of vertebrate diversity.     

Problems with areal definitions of endemism: the effects of spatial scaling

The concept of endemism is useful in quantifying the biological uniqueness of an area, and has been used by many authors as a meaningful alternative to simple species richness. The traditional definition of endemism includes those species with ranges restricted to a particular region, and therefore is useful only in reference to that region. To compare different regions, however, a standardized approach is required, so several authors began using area-based definitions. Accordingly, those species with ranges smaller than a particular area (e.g. 50,000 km ²) are deemed endemic. Nevertheless, several problems are associated with this approach: as the area threshold changes, scaling of endemism also changes, producing a different picture of endemism for each spatial scale. Moreover, the areal definition assumes equal levels of heterogeneity in different landscapes (clearly a simplification), which overemphasizes fine-grained regions. Herein, the importance of distinguishing the regional definition (endemism) from the areal definition (range restriction) is emphasized, and investigators are encouraged to consider multiple spatial scales and geographic dimensions in evaluations of biodiversity.