阵列光镊与微流控芯片技术的结合与应用

在生物医学研究领域中,阵列光镊与微流控芯片的结合已经成为进行细胞操纵、转移以及少量细胞样品分选等方面最有希望的方法之一。光镊技术对样品具有非接触弹性控制、无机械损伤、可无菌操作等优势,以及微流控芯片分析的高效、多功能、微型化、低成本等优势,成为芯片实验室(Lab-on-a-Chip)的重要研究方面。该文概述了阵列光镊技术的形成与研究现状以及微流控芯片技术的发展与应用现状,分析了在不同阵列光镊形成方法下结合微流控芯片可实现的功能与应用,并对其发展趋势进行了展望。     

Protein-DNA chimeras for single molecule mechanical folding studies with the optical tweezers

Here we report on a method that extends the study of the mechanical behavior of single proteins to the low force regime of optical tweezers. This experimental approach relies on the use of DNA handles to specifically attach the protein to polystyrene beads and minimize the non-specific interactions between the tethering surfaces. The handles can be attached to any exposed pair of cysteine residues. Handles of different lengths were employed to mechanically manipulate both monomeric and polymeric proteins. The low spring constant of the optical tweezers enabled us to monitor directly refolding events and fluctuations between different molecular structures in quasi-equilibrium conditions. This approach, which has already yielded important results on the refolding process of the protein RNase H (Cecconi et al. in Science 309: 2057-2060, 2005), appears robust and widely applicable to any protein engineered to contain a pair of reactive cysteine residues. It represents a new strategy to study protein folding at the single molecule level, and should be applicable to a range of problems requiring tethering of protein molecules.     

Towards biological applications of nanophotonic tweezers

Optical trapping (synonymous with optical tweezers) has become a core biophysical technique widely used for interrogating fundamental biological processes on size scales ranging from the single-molecule to the cellular level. Recent advances in nanotechnology have led to the development of ‘nanophotonic tweezers,’ an exciting new class of ‘on-chip’ optical traps. Here, we describe how nanophotonic tweezers are making optical trap technology more broadly accessible and bringing unique biosensing and manipulation capabilities to biological applications of optical trapping.     

Selective bioparticle retention and characterization in a chip‐integrated confocal ultrasonic cavity

We demonstrate selective retention and positioning of cells or other bioparticles by ultrasonic manipulation in a microfluidic expansion chamber during microfluidic perfusion. The chamber is designed as a confocal ultrasonic resonator for maximum confinement of the ultrasonic force field at the chamber center, where the cells are trapped. We investigate the resonant modes in the expansion chamber and its connecting inlet channel by theoretical modeling and experimental verification during no‐flow conditions. Furthermore, by triple‐frequency ultrasonic actuation during continuous microfluidic sample feeding, a set of several manipulation functions performed in series is demonstrated: sample bypass—injection—aggregation and retention—positioning. Finally, we demonstrate transillumination microscopy imaging of ultrasonically trapped COS‐7 cell aggregates. Biotechnol. Bioeng. 2009;103: 323–328. © 2009 Wiley Periodicals, Inc.     

超声波在生物发酵工程中的应用

一定强度的超声波作用于发酵过程中缩短发酵时间,改善生物反应条件,提高生物产品的质量和产量,微弱超声可用于在线检测某些发酵过程参数,本简要介绍了超声波作用于生物发酵过程的基本原理,并详细讨论了超声波在遗传育种 ,改善发酵工艺有发酵产物的提取与分离,发酵产物浓度的在线检测等方面的主要应用。     

Enantioselective recognitions of chiral molecular tweezers containing imidazoliums for amino acids

Two kinds of novel chiral molecular tweezers containing imidazoliums were synthesized from L-alanine, L-phenylalanine, and L-glutamic acid. They are constructed by the chiral imidazolium pincers and two different spacers which are 1,3-bis (bromomethyl)benzene and 2,6-bis(bromomethyl)pyridine, respectively. The enantioselective recognition of L- and D-amino acid derivatives by these molecular tweezers was investigated by UV spectroscopic titration experiments and good enantioselectivities were obtained, which are highly sensitive to whether the spacer has the binding site and the pincers has the other aromatic rings besides imidazolium ring. The host molecular 3b.2PF6- showed remarkable enantioselectivity for N-Boc protected histidine methyl ester, affording K(L)/K(D) of 5.10.     

A toolbox for generating single‐stranded DNA in optical tweezers experiments

Essential genomic transactions such as DNA‐damage repair and DNA replication take place on single‐stranded DNA (ssDNA) or require specific single‐stranded/double‐stranded DNA (ssDNA/dsDNA) junctions (SDSJ). A significant challenge in single‐molecule studies of DNA–protein interactions using optical trapping is the design and generation of appropriate DNA templates. In contrast to dsDNA, only a limited toolbox is available for the generation of ssDNA constructs for optical tweezers experiments. Here, we present several kinds of DNA templates suitable for single‐molecule experiments requiring segments of ssDNA of several kilobases in length. These different biotinylated dsDNA templates can be tethered between optically trapped microspheres and can, by the subsequent use of force‐induced DNA melting, be converted into partial or complete ssDNA molecules. We systematically investigated the time scale and efficiency of force‐induced melting at different ionic strengths for DNA molecules of different sequences and lengths. Furthermore, we quantified the impact of microspheres of different sizes on the lifetime of ssDNA tethers in optical tweezers experiments. Together, these experiments provide deeper insights into the variables that impact the production of ssDNA for single molecules studies and represent a starting point for further optimization of DNA templates that permit the investigation of protein binding and kinetics on ssDNA. © 2013 Wiley Periodicals, Inc. Biopolymers 99:611–620, 2013.     

Detection of ultrasonic cavitation based on low-frequency analysis of acoustic signal

The acoustic cavitation phenomenon constitutes a potential hazard in ultrasound diagnostics and therapy so that early and effective detection of cavitation is of great interest. However, cavitation might even bring a higher risk especially when an echocontrast agent based on microbubbles is used. The major goal of the present work was to develop a cavitation detection method based on increased level of cavitation noise in the range of low frequencies (about 1 Hz). This method was applied in vitro using a model of body fluid containing a model echocontrast agent, such as 5% solution of lyophilized egg albumin, which was sonicated by ultrasound disintegrator. Ultrasound signal evokes cavitation in microbubble suspension accompanied by a certain level of cavitation acoustic noise. The level of noise voltage increased in the frequency range of 0.1 to 2 Hz in the presence of cavitation. Hence, this method makes it possible to determine the value of cavitation threshold. In addition, we examined how the cavitation threshold is affected by temperature and viscosity. It was found that the cavitation threshold decreased with growing temperature while it increased with growing viscosity.     

The ultrasonic mating signal of the male lesser wax moth

Abstract. Male lesser wax moths, Achroia grisella (Fabricius) (Lepidoptera: Pyralidae: Galleriinae), produce both a pheromone and an ultrasonic acoustic signal that function in mate attraction. We describe the structure of the acoustic signal, in particular the interpulse intervals and the spectral properties of the pulses. The song consists of a train of ultrasonic pulses. The interpulse interval is usually bimodally distributed, but can sometimes be unimodal. This reflects variation in the duration of the up and down wing strokes. The pulses are also usually paired which can produce multimodality of the interpulse intervals. These paired pulses probably reflect wingbeat asynchrony because they are not found in males in which the signalling capability of one wing's sound producing structure is abolished.
The song's frequency spectrum has peaks at around 80 and 100 kHz. The first peak varies significantly with male size, with larger males producing a lower frequency peak. The second peak is associated with male age, with 1-day-old males producing songs with a lower frequency second peak. Thus the ultrasonic song of lesser wax moths is more complex in structure than previously reported and could provide potentially important cues to females. However, the ability of females to discriminate such detail is not known.     

声学指数在城市森林鸟类多样性评估中的应用

鸣声是鸟类之间进行沟通和传递信息的重要方式,这为通过声学监测评估鸟类多样性提供了独特的机会。利用声学指数快速评估生物多样性是一种新兴的调查方法,但城市森林中的复杂声环境可能会导致声学指数的指示结果出现偏差。为了解声学指数在城市森林中应用的可行性,本研究在北京市东郊森林公园设置了50个矩阵式调查样点,于2021年4–6月每月进行1次鸟类传统观测和同步鸣声采集,通过比较两种方法的结果来探究声学监测的有效性。采用Spearman相关分析和广义线性混合模型评估6个常用声学指数与鸟类丰富度和多度的关系,并衡量了每个指数的性能。结果表明:(1)本研究共记录到鸟类10目23科35种,通过声学监听识别的总物种数与传统鸟类观测相等,但具体鸟种存在差异;(2)不同月份间声学指数与鸟类丰富度和多度的相关性有明显差别,声学复杂度指数(ACI)和标准化声景差异指数(NDSI)优于其他指数,是评估鸟类多样性的关键变量;(3)声学指数对鸟类多度的预测能力(R²m=0.32,R2c=0.80)要高于丰富度(R²m=0.12,R2c=0.18)。声学指数为快速评估生物多样性提...     

Detection of xylem cavitation in field-grown pine trees using the acoustic emission technique

The relationship between the ultrasonic acoustic emission (AE) and the needle water potential in field-grown Japanese black pine,Pinus thunbergii, and excised-pine shoots was investigated in summer. The AE technique was employed as a reliable indicator of cavitation events in the water columns of xylem tracheids even under field conditions. In excised shoots. AE events detected when the needle water potential fell below about-0.9 MPa. In the case of field-grown pine trees, however, relatively few AE event were detected when needle water potential was lower than-0.9 MPa. This suggests that the occurrence of cavitation events in Japanese black pine growing under field conditions is comparatively rare, even in summer.     

Quantification of a novel h-shaped ultrasonic resonator for separation of biomaterials under terrestrial gravity and microgravity conditions

A novel, h-shaped ultrasonic resonator was used to separate biological particulates. The effectiveness of the resonator was demonstrated using suspensions of the cyanobacterium, Spirulina platensis. The key advantages of this approach were improved acoustic field homogeneity, flow characteristics, and overall separation efficiency (sigma = 1 - ratio of concentration in cleared phase to input), monitored using a turbidity sensor. The novel separation concept was also effective under microgravity conditions; gravitational forces influenced overall efficiency. Separation of Spirulina at cleared flow rates of 14 to 58 L/day, as assessed by remote video recording, was evaluated under both microgravity (相似文献   

Thermoelastic excitation of acoustic waves in biological models exposed to high-peak-power pulsed electromagnetic radiation of extremely high frequency

We experimentally demonstrated for the first time that high-peak-power pulsed electromagnetic radiation of extremely high frequency (35.27 GHz; pulse widths, 100 and 600 ns; peak power, 20 kW) is capable of thermoelastic excitation of acoustic waves in model water-containing objects and muscle tissue of animals. The amplitude and duration of excited acoustic pulses are within the limits of accuracy of theoretical estimates and are a complex nonlinear function of electromagnetic energy input. The propagation velocities of acoustic pulses in water-gelatin models and isolated muscle tissue of animals are close to reference data. The excitation of acoustic waves in biological systems exposed to high-peak-power pulsed microwaves is an important phenomenon that makes an essential contribution to understanding the mechanisms of biological effects in these electromagnetic fields.     

Selection on ultrasonic call rate in neonatal rats affects low frequency,but not ultrasonic,vocalizations in adults

In this experiment, we studied a rodent model selected over 57 generations for high or low rates of ultrasonic vocalizations (USVs) during maternal separation as pups. We investigated the influence of this breeding on the adult animals’ subsequent vocal output, comparing acoustic variables across developmental stages. We hypothesized that selection on pup USV rate would impact adult USV production without affecting lower frequency calls. Contrary to this hypothesis, we found neither number of USV calls or other acoustic variables to differ among selected adult lines. Instead, we found that pup USV selection mainly affected adults’ low-frequency (human-audible) calls. Furthermore, low-frequency vocalizations did not fully fit a predicted correlation between body weight and fundamental frequency: high line males, although the heaviest on average, did not produce the lowest fundamental frequencies. Our findings suggest that selection for early ultrasonic vocal behaviour pleiotropically results in changes in anatomical production mechanisms and/or neural control affecting low-frequency calls.     

Method of localized removal of cells using a bolt‐clamped Langevin transducer with an ultrasonic horn

Cell isolation by eliminating undesirable cell aggregations or colonies with low activity is essential to improve cell culture efficiency. Moreover, when creating tissues from induced pluripotent stem cells, residual undifferentiated cells must be removed to prevent tumor formation in vivo. Here, we evaluated the use of ultrasonic irradiation, which can apply energy locally without contact, and proposed a method to eliminate cells in a small area of culture by ultrasonic irradiation from a Langevin transducer. We constructed a device that incorporated a bolt‐clamped 19.84 kHz Langevin transducer with an ultrasonic horn and determined the optimal conditions for stable elimination of cells in small areas of a 35‐mm culture dish. The optimal conditions were as follows: number of cycles = 400, clearance distance = 1 mm, volume of medium = 4 mL, and distance from the center of culture surface = 0 mm. The mean cell elimination area under these conditions was 0.097 mm². We also evaluated the viability of neighboring cells after ultrasonic irradiation by fluorescent staining and found that most cells around the elimination area survived. These findings suggest that the proposed method has potential for localized elimination of cells without the need for contact with the cell surface.     

Use of inexpensive pressure transducers for measuring water levels in wells

Frequent measurement of below ground water levels at multiple locations is an important component of many wetland ecosystem studies. These measurements, however, are usually time consuming, labor intensive, and expensive. This paper describes a water-level sensor that is inexpensive and easy to construct. The sensor is placed below the expected low water level in a shallow well and, when connected to a datalogger, uses a pressure transducer to detect groundwater or surface water elevations. Details of pressure transducer theory, sensor construction, calibration, and examples of field installations are presented. Although the transducers must be individually calibrated, the sensors have a linear response to changing water levels (r ² .999). Measurement errors resulting from temperature fluctuations are shown to be about 4 cm over a 35°C temperature range, but are minimal when the sensors are installed in groundwater wells where temperatures are less variable. Greater accuracy may be obtained by incorporating water temperature data into the initial calibration (0.14 cm error over a 35C temperature range). Examples of the utility of these sensors in studies of groundwater/surface water interactions and the effects of water level fluctuations on tree growth are provided.