Photosynthetic behavior of Spanish Arbequina and Italian Maurino olive (<Emphasis Type="Italic">Olea europaea</Emphasis> L.) cultivars under super-intensive grove conditions

The study was carried out in a four-year-old super-high density olive grove in Central Italy to compare leaf gas exchanges of Spanish Arbequina and Italian Maurino olive cultivars. Overall, from mid July to mid November, Maurino had a slightly higher maximum light-saturated net photosynthetic rate (P _Nmax) than Arbequina. The lowest and the highest P _Nmax values were recorded at the end of July and in mid November, respectively. Current-season leaves showed similar or slightly higher P _Nmax values than one-year-old leaves. During the day Maurino always had slightly higher values or values similar to Arbequina, with the highest P _Nmax being in the morning. Maurino had similar or higher dark respiration rate (R _D) values compared to Arbequina. During the day, in both cultivars the R _D was lower at 9:00 than in the afternoon. The pattern of the photosynthetic irradiance-response curve was similar in the two genotypes, but the apparent quantum yield (Y _Q) was higher in Maurino. In both cultivars intercellular CO₂ concentration (C _i) tended to increase when P _Nmax decreased. The increase in C _i corresponded to a decrease in stomatal conductance (g _s). The transpiration rate (E) increased from mid July to the beginning of August, then decreased in September and increased again in November. Particularly in the morning, the current-season leaves showed similar or slightly higher E values than the one-year-old leaves. During the day, in both cultivars and at both leaf ages, E was higher in the afternoon. No effects on leaf gas exchanges due to the presence or absence of fruit on the shoot were found. Overall, there was satisfactory physiological adaptation for Arbequina to the conditions of Central Italy and for Maurino to the superintensive grove conditions.     

Cryopreservation of fruit germplasm

Most temperate fruit species are genetically heterozygous and vegetatively propagated. Active collections of fruit genetic resources in Germany are generally maintained in the field, e.g., as potted plants for Fragaria and as trees for pome and stone fruit species. The plant material in active collections should be kept in duplicate to ensure security in case of disease or environmental disaster. The aim of this study was to develop an efficient complementary conservation strategy for fruit genetic resources. Although costly, fruit tree cultivars can be duplicated as field collections at a second site within the framework of the German Fruit Genebank, which is a decentralized fruit-specific network. Wild species accessions, particularly those of the genera Malus spp. (apple) and Fragaria spp. (strawberry) as well as strawberry cultivars, can also be duplicated by means of cryopreservation. In the current study, long-term cryopreservation was initiated for 194 Fragaria genotypes. A protocol combining vitrification with cold acclimation was effective and highly reproducible, with an average regrowth rate of 86%. In Malus, a general cryopreservation protocol based on dormant winter buds was adopted. Based on the results provided in this study, a combination of traditional ex situ conservation and cryopreservation can greatly improve the stability and security of fruit germplasm conservation.     

Fast molecular assay to detect the rate of decay of <Emphasis Type="Italic">Bactrocera oleae</Emphasis> (Diptera: Tephritidae) DNA in <Emphasis Type="Italic">Pterostichus melas</Emphasis> (Coleoptera: Carabidae) gut contents

The molecular analysis of predation through specific DNA amplification has been utilized extensively over the last decade, and has been shown to be fast and effective. However, it is necessary to evaluate the prey detectability half-life if we are to correctly infer the relevance of particular predators to particular pests and to accurately model the effect of biocontrol. We present here the design and analysis of a set of primers to amplify olive fruit fly (Bactrocera oleae) DNA in predator gut contents, allowing fast evaluation of the digestion time. We modified the existing protocol by solubilizing the prey DNA directly from the gut, and we applied this modified protocol to demonstrate that Pterostichus melas, one of the most common carabids in olive groves in Italy, feeds on B. oleae pupae. After feeding carabids with a single pupa, traces of the pest were found to be detectable more than 20 h after ingestion. This method could also be applied to other predators to evaluate trophic interactions of the olive fruit fly. The relevance of generalist predation to the mortality of the pupal stage of B. oleae is of great economic interest since B. oleae causes serious damage during olive production, reducing the commercial value of olive oil and table olives.     

Population Growth Parameters of Rose Aphid, <Emphasis Type="Italic">Macrosiphum rosae</Emphasis> (Hemiptera: Aphididae) on Different Rose Cultivars

The rose aphid, Macrosiphum rosae (L.), is one of the most important pests on rose plants (Rosa spp.) with a worldwide distribution. As resistance indices, the development, survivorship, and reproduction of this aphid were evaluated on 10 rose cultivars, including Bella Vita, Cool Water, Dolce Vita, Maroussia, Orange Juice, Pinkpromise, Roulette, Tea, Valentine, and Persian Yellow in laboratory at 25?±?1°C, 65?±?5% relative humidity, and photoperiod of 16:8 (L/D)?h. Rose aphid successfully survived on all 10 rose cultivars, although mortality rate was higher on Tea and Bella Vita. The number of offspring per female differed significantly among the tested rose cultivars, and ranged from 9.2 on Tea to 38.7 nymphs on Orange Juice. Population growth parameters were significantly affected by rose cultivars. The longest mean generation time (T) was observed on Bella Vita (14.8 days) and Tea (14.7 days) and the shortest on Orange Juice (10.0 days). The net reproductive rate (R ₀ ) ranged from 6.9 on Tea to 33.2 nymphs on Orange Juice cultivar. Correspondingly, the highest value of intrinsic rate of increase (r _m ) was observed on Orange Juice (0.348 day^?1) and lower values on Tea (0.131 day^?1) followed by Bella Vita (0.154 day^?1). Cluster analysis of all the measured parameters of rose aphid on different rose cultivars revealed that Tea and Bella Vita were relatively resistant to M. rosae. These findings could be useful in developing an integrated pest management (IPM) program for this aphid in urbanized areas and commercial rose potting.     

Simultaneous estimation of saponin contents from soybean seed using Fourier transform infrared spectroscopy and high-performance liquid chromatography analysis

The aim of this study is to determine the feasibility of Fourier transform infrared (FT-IR) spectroscopy for simultaneous determination of saponin contents in different soybean cultivars. In cross validation between predicted content of saponin by PLS regression modeling from FT-IR spectra and measured content by HPLC, total saponin contents were predicted with good accuracy (R ² ≥ 0.71). In external validation, saponin group Ab (R ² = 0.88), saponin DDMP-group βg (R ² = 0.85), total saponin group B (R ² = 0.88), and total saponin content (R ² = 0.87) were predicted with good accuracy, while prediction for saponin group Aa (R ² = 0.58), saponin group Bb′ (R ² = 0.58), and total saponin group A (R ² = 0.25) had relatively lower accuracy. Considering these results, we suggest that the PLS prediction system for saponin contents using FT-IR analysis could be applied as a novel screening tool for high yielding lines in soybean breeding.     

Genome-wide analysis and characterization of molecular evolution of the <Emphasis Type="Italic">HCT</Emphasis> gene family in pear (<Emphasis Type="Italic">Pyrus bretschneideri</Emphasis>)

Lignin is a major component of stone cells in pear fruit, which significantly affects fruit quality. Hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase (HCT), a recently discovered enzyme in plants, is an important gene that participates in the formation of lignin. Although HCT gene cloning and expression patterns have been studied in several species, including pear, there is still no extensive genome-wide bioinformatics analysis on the whole gene family, and the evolutionary history of HCT gene family is still unknown. A total of 82 HCT genes were identified in pear, most of which have one or two exons, and all with the conserved HXXXD motif and transferase domains. Based on the structural characteristics and phylogenetic analysis of these sequences, the HCT gene family genes could be classified into four main groups. Structural analysis also revealed that 25 % of HCT genes share a MYB binding site. Expansion of the HCT gene family mostly occurred before the divergence between Arabidopsis and Rosaceae, with whole-genome duplication or segmental duplication events playing the most important role in the expansion of the HCT gene family in pear. At the same time, purifying selection also played a critical role in the evolution of HCT genes. Five of the 82 HCT genes were verified by qRT-PCR to correspond to the pattern of stone cell formation during pear fruit development. The genome-wide identification, chromosome localization, gene structures, synteny, and expression analyses of pear HCT genes provide an overall insight into HCT gene family and their potential involvement in growth and development of stone cells.     

Effect of cuticular waxes compounds from table grapes on growth,germination and gene expression in <Emphasis Type="Italic">Botrytis cinerea</Emphasis>

Botrytis cinerea attacks a broad range of host causing significant economic losses in the worldwide fruit export industry. Hitherto, many studies have focused on the penetration mechanisms used by this phytopathogen, but little is known about the early stages of infection, especially those such as adhesion and germination. The aim of this work was to evaluate the effect of cuticular waxes compounds from table grapes on growth, germination and gene expression of B. cinerea. To accomplish this, growth was analyzed using as substrate n-alkanes extracted from waxes of fresh fruit (table grapes, blueberries and apricots). Subsequently, the main compounds of table grape waxes, oleanolic acid (OA) and n-fatty alcohols, were mixed to generate a matrix on which conidia of B. cinerea were added to assess their effect on germination and expression of bctub, bchtr and bchex genes. B. cinerea B05.10, isolated from grapes, increased its growth on a matrix composed by table grapes n-alkanes in comparison to a matrix made with n-alkanes from apricot or blueberries. Moreover, at 2.5 h, B05.10 germination increased 17 and 33 % in presence of n-alkanes from table grape, in comparison to conditions without alkanes or with blueberries alkanes, respectively. Finally, expression of bchtr and bchex showed a significant increase during the first hour after contact with n-fatty alcohols and OA. In conclusion, B. cinerea displays selectivity towards certain compounds found in host waxes, mainly n-fatty alcohols, which could be a good candidate to control this phytopathogen in early stages of infection.     

Effects of irrigation treatments on the quality of table olives produced with the Greek-style process

The irrigation of olive orchards is commonly applied to produce table olives with optimal size. No data have been published on the microbiological quality of drupes from irrigated olive groves during fermentation. The trials T100 and T50 (receiving a water amount equivalent to 100 % and 50 % of the required amount, respectively) and control T0 (rainfed trial) were monitored during two consecutive years. The results showed a significant increase of equatorial diameter and flesh:pit ratio of irrigated drupes. The decrease of pH and the numbers of lactic acid bacteria (LAB) registered for the irrigated trials during the fermentation were more consistent than those displayed by control T0. Lactobacillus pentosus, Lactobacillus plantarum, Lactobacillus coryniformis, and Pediococcus pentosaceus for LAB and Candida boidinii, Candida diddensiae, and Wickerhamomyces anomalus for yeasts were isolated at the highest concentrations. The global sensory acceptance was better for irrigated trials than control T0. The statistical multivariate analysis showed that the effect of irrigation was independent of the seasonal variability and it clearly distinguished the T100 and T50 trials from rainfed control. Irrigation improves significantly the quality of table olives. Interestingly, all explorative multivariate analyses showed low dissimilarity between irrigated trials; thus, the thesis T50 represents an effective approach to save water in olive orchards without compromising the quality of table olives.     

Gas exchange,carbon balance and stomatal traits in wild and cultivated rice (<Emphasis Type="Italic">Oryza sativa</Emphasis> L.) genotypes

Carbon balancing within the plant species is an important feature for climatic adaptability. Photosynthesis and respiration traits are directly linked with carbon balance. These features were studied in 20 wild rice accessions Oryza spp., and cultivars. Wide variation was observed within the wild rice accessions for photosynthetic oxygen evolution or photosynthetic rate (A), dark (R _d), and light induced respiration (LIR) rates, as well as stomatal density and number. The mean rate of A varied from 10.49 μmol O₂ m^?2 s^?1 in cultivated species and 13.09 μmol O₂ m^?2 s^?1 in wild spp., The mean R _d is 2.09 μmol O₂ m^?2 s^?1 and 2.31 μmol O₂ m^?2 s^?1 in cultivated and wild spp., respectively. Light induced Respiration (LIR) was found to be almost twice in wild rice spp., (16.75 μmol O₂ m^?2 s^?1) compared to cultivated Oryza spp., Among the various parameters, this study reveals LIR and A as the key factors for positive carbon balance. Stomatal contribution towards carbon balance appears to be more dependent on abaxial surface where several number of stomata are situated. Correlation analysis indicates that R _d and LIR increase with the increase in A. In this study, O. nivara (CR 100100, CR 100097), O. rufipogon (IR 103404) and O. glumaepatula (IR104387) were identified as potential donors which could be used in rice breeding program. Co-ordination between gas exchange and patchiness in stomatal behaviour appears to be important for carbon balance and environmental adaptation of wild rice accessions, therefore, survival under harsh environment.     

Silencing of six susceptibility genes results in potato late blight resistance

Phytophthora infestans, the causal agent of late blight, is a major threat to commercial potato production worldwide. Significant costs are required for crop protection to secure yield. Many dominant genes for resistance (R-genes) to potato late blight have been identified, and some of these R-genes have been applied in potato breeding. However, the P. infestans population rapidly accumulates new virulent strains that render R-genes ineffective. Here we introduce a new class of resistance which is based on the loss-of-function of a susceptibility gene (S-gene) encoding a product exploited by pathogens during infection and colonization. Impaired S-genes primarily result in recessive resistance traits in contrast to recognition-based resistance that is governed by dominant R-genes. In Arabidopsis thaliana, many S-genes have been detected in screens of mutant populations. In the present study, we selected 11 A. thaliana S-genes and silenced orthologous genes in the potato cultivar Desiree, which is highly susceptible to late blight. The silencing of five genes resulted in complete resistance to the P. infestans isolate Pic99189, and the silencing of a sixth S-gene resulted in reduced susceptibility. The application of S-genes to potato breeding for resistance to late blight is further discussed.     

Effects of interaction of <Emphasis Type="Italic">alc</Emphasis> (alcobaca) keeping-life gene with elevated fruit pigmentation genes

Results of research on the study of the effects of the interaction between the keeping-life gene alc with the elevated fruit pigmentation genes hp, dg, B ^og, and B ^c are presented. It is shown that use of the gene recombinations alc/alc//hp/hp//B ^og/B ^og(B ^c/B ^c) and alc/alc//dg/dg is the most effective means of creating highly commercial, long keeping life varieties of tomato with saturated-red coloring of the fruit.     

Genetics of resistance in apple against <Emphasis Type="Italic">Venturia inaequalis</Emphasis> (Wint.) Cke

Apple (Malus × domestica) is the third important fruit in terms of production and consumption worldwide. Apple scab caused by Venturia inaequalis is the most devastating disease of apple. In the apple-growing regions, many fungicides are sprayed to control the disease leading to increase in the production cost. Development of scab-resistant cultivars is the long-lasting solution to control the disease. In apples, more than 20 major scab resistance genes have been identified in various cultivars and few wild relatives. Of all these genes, Rvi6 derived from Malus floribunda has been most extensively used in different breeding programs. Gene for gene interactions of these resistance genes with the avirulence genes from V. inaequalis have been understood in many cases. QTL-based polygenic resistance has also been characterized in apple. Nucleotide Binding Site Leucine-Rich Repeats (NBS-LRR) have been identified from the apple genome and many of them have been characterized from the scab resistance region. Molecular markers associated with most of the major scab resistance genes have been identified and their position has been mapped on different linkage groups. Marker-assisted selection (MAS) can be helpful in speeding up and accurately identifying the scab-resistant parents and progeny. Pyramiding of several major resistance genes can be undertaken for more durable resistance against apple scab. The present paper reviews the Malus-Venturia pathosystem, current status of knowledge about scab resistance genes, and their application in breeding against apple scab.     

Landscape use and fruit cultivation in Petra (Jordan) from Early Nabataean to Byzantine times (2nd century <Emphasis Type="SmallCaps">bc</Emphasis>–5th century <Emphasis Type="SmallCaps">ad</Emphasis>)

Archaeobotanical analyses of charred seeds, fruit and wood charcoal from the residential part of the ez-Zantur area at Petra, Jordan, provide new data on the agricultural economy and use of the landscape in this famous merchant Nabataean city from the middle of the 2nd century bc to the beginning of the 5th century ad. The study is based on analyses of 7,640 whole and fragmented seeds, pips and fruit stones and 624 charcoal fragments sampled from household deposits. The results show that the food supply was based on common Mediterranean cultivated taxa such as cereals (Hordeum vulgare, Triticum aestivum/durum), pulses (Lens culinaris) and fruit (Olea europaea, Ficus carica, Vitis vinifera), which were probably cultivated both in the city and its hinterland. The by-products from the processing of cereals and fruit trees played a significant role in fuel supply, supplementing woody wild plants obtained from rocky slopes and the desert valley. The variety of fuel resources shows a major capacity to manage complex supply networks and perhaps the rarity of natural woodland cover. The existence of orchards within the city centre and notably olive groves is indicated in the Early Nabataean period (mid 2nd century to mid 1st century bc) but they expanded during the Classical Nabataean period (mid 1st century bc to 1st century ad), probably reflecting specialised fruit growing. Unusual plant remains such as Prunus armeniaca (apricot), P. persica (peach) and Juglans regia (walnut) are considered to be social indicators of prosperity. These archaeobotanical results fit with others from this region and match with the urbanization and social dynamics of the city of Petra.     

Comparative studies of leaf surface chemical biosynthesis in different tobacco cultivars

To understand the differences in the biosynthesis of leaf surface chemicals and their influence on aphid preference for different tobacco cultivars (Nicotiana tabacum), we analyzed the secretory characteristics of glandular trichomes of four commercial cultivars, K326 (flue-cured), Beinhart 1000-1 (cigar), Basma YNOTBS1 (oriental), and Dabai 1 (burley), and their parental species, Nicotiana sylvestris and Nicotiana tomentosiformis. Trichome-type observation showed that K326 and N. sylvestris have three kinds of glandular trichomes (non-glandular, long stalked glandular, and short stalked glandular trichomes), whereas Beinhart 1000-1, Basma YNOTBS1, Dabai 1, and N. tomentosiformis had two kinds of glandular trichomes (long and short stalked glandular trichomes). The gas chromatography–mass spectrometry profiles of leaf exudates indicated that N. tomentosiformis synthesized only labdanoids; N. sylvestris, K326 and Dabai 1 synthesized only cembranoids; and Beinhart 1000-1 and Basma YNOTBS1 synthesized cembranoids and labdanoids. Gene expression pattern analysis revealed that the labdanoid synthesis-related genes NtABS and NtCPS2 were expressed in N. tomentosiformis, Beinhart 1000-1, and Basma YNOTBS1, whereas the cembranoid synthesis-related genes NtCYC and NtCYP71D16 were expressed in N. sylvestris and all four commercial cultivars. Evolutionary analysis indicated that NtCYC and NtCYP71D16 might be phylogenetically originated from N. sylvestris, whereas NtABS and NtCPS2 expressed in Basma YNOTBS1 and Beinhart 1000-1 might be derived from N. tomentosiformis. In addition, aphid attraction (number of aphids) was significantly and positively correlated with the total glandular secretion (r² =?0.9425, P?≤?0.05), and it was significantly and positively correlated with amount of CBT-diol (r²?=?0.9224; P?≤?0.05). These results provide new insights into the biosynthesis of diterpenoids and biotic stress resistance in tobacco.     

Enantioconvergent hydrolysis of racemic styrene oxide at high concentration by a pair of novel epoxide hydrolases into (<Emphasis Type="Italic">R</Emphasis>)-phenyl-1,2-ethanediol

Objectives

To prepare (R)-phenyl-1,2-ethanediol ((R)-PED) with high enantiomeric excess (ee _p) and yield from racemic styrene oxide (rac-SO) at high concentration by bi-enzymatic catalysis.

Results

The bi-enzymatic catalysis was designed for enantioconvergent hydrolysis of rac-SO by a pair of novel epoxide hydrolases (EHs), a Vigna radiata EH3 (VrEH3) and a variant (AuEH2^A250I) of Aspergillus usamii EH2. The simultaneous addition mode of VrEH3 and AuEH2^A250I, exhibiting the highest average turnover frequency (aTOF) of 0.12 g h^?1 g^?1, was selected, by which rac-SO (10 mM) was converted into (R)-PED with 92.6% ee _p and 96.3% yield. Under the optimized reaction conditions: dry weight ratio 14:1 of VrEH3-expressing E. coli/vreh3 to AuEH2^A250I-expressing E. coli/Aueh2 ^A250I and reaction at 20 °C, rac-SO (10 mM) was completely hydrolyzed in 2.3 h, affording (R)-PED with 98% ee _p. At the weight ratio 0.8:1 of rac-SO to two mixed dry cells, (R)-PED with 97.4% ee _p and 98.7% yield was produced from 200 mM (24 mg/ml) rac-SO in 10.5 h.

Conclusions

Enantioconvergent hydrolysis of rac-SO at high concentration catalyzed by both VrEH3 and AuEH2^A250I is an effective method for preparing (R)-PED with high ee _p and yield.