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Tricia Rowlison Timothy P. Cleland Mary Ann Ottinger Pierre Comizzoli 《Molecular & cellular proteomics : MCP》2020,19(12):2090-2104
Highlights
- •Several proteins were found to be unique to each male type.
- •Expression levels of seven proteins trended downward in teratospermic males.
- •Several proteins were related to sperm motility and subsequent oocyte binding.
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《Molecular & cellular proteomics : MCP》2020,19(11):1850-1859
Highlights
- •Using ExCYT, genomics, and Mass Spectrometry, we were able to uncover immune cell marker alterations that provide new insight into the biology of early stage ccRCC.
- •Among the CD45+ population, we observed a high level of myeloid cell infiltration in treatment-naïve ccRCC tissues.
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Elez D. Vainer Juliane Kania-Almog Ghadeer Zatara Yishai Levin Gilad W. Vainer 《Molecular & cellular proteomics : MCP》2020,19(10):1619-1631
Highlights
- •TOP: robust, bio-friendly FFPE proteome extraction method with less fixation bias.
- •Proteome of MSI-H colorectal cancer identifies immunobiology key elements.
- •MSI-H tumor displays an “INFg-STAT1 centric signature”.
- •Long-term IFNg induction In-vitro mimicks MSI-H signature.
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《Molecular & cellular proteomics : MCP》2020,19(6):928-943
Highlights
- •EGFR-TKI molecular response profiling covering 10138 proteins and 13486 mRNAs.
- •EGFR-TKI combination therapy screen using a library of 528 compounds.
- •Several new candidate EGFR-TKI escape mechanisms and combination therapy targets.
- •Combined targeting of the oncogene BCL6 and EGFR results in synergy in NSCLC cells.
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《Molecular & cellular proteomics : MCP》2020,19(11):1876-1895
Highlights
- •Guidelines for studying protein complexes via co-fractionation mass spectrometry.
- •A novel procedure for profiling gold standard protein complexes in CF-MS data.
- •Recommendations for efficient CF-MS fractionation collection.
- •Scoring metric recommendations for precise and sensitive CF-MS data analysis.
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《Molecular & cellular proteomics : MCP》2020,19(11):1760-1766
Highlights
- •Future proteomic analyses for longitudinal studies and P4 medicine arguably require ≥1M samples/day.
- •Proteome depth/coverage is commonly the focus whereas analytical speed is typically neglected.
- •A compromise between analytical depth and speed is needed for future large-scale studies.
- •Ultrahigh-speed ‘omic’ analyses require tools that are intrinsically fast such as laser-based MS.
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Microparticles as tissue modulators provide a higher control of cell fate during the process of tissue regeneration. Through their design, they deliver instructive cues to cells in a more efficient way improving the success of bottom-up approaches. 相似文献
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《Molecular & cellular proteomics : MCP》2020,19(5):852-870
Highlights
- •Develop a TMT-based proteomics tool to profile cysteine persulfides in the cellular proteomes.
- •Discover a Redox Thiol Switch from protein S-glutathioinylation to S-persulfidation (RTSGS) with implications in the regulation of cellular energy metabolism under oxidative stress.
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Diana Samodova Christopher M. Hosfield Christian N. Cramer Maria V. Giuli Enrico Cappellini Giulia Franciosa Michael M. Rosenblatt Christian D. Kelstrup Jesper V. Olsen 《Molecular & cellular proteomics : MCP》2020,19(12):2139-2157
Highlights
- •ProAlanase is a powerful protease for efficient low pH disulfide bond mapping.
- •High suitability for analysis of histone family members and their PTMs.
- •Accurate phosphorylation profiling in proline-rich proteins.
- •Sequence coverage increase and full de novo sequencing in combination with trypsin.
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Schematic showing the main categories of models incorporating structured biological data covered in this review. The first panel shows an example of a model operating on sequence data, the second panel shows a model in which dimension reduction is influenced by the connections in a gene network, and the third panel shows a neural network with structure constrained by a phylogeny or ontology. The ‘x’ values in the data tables represent gene expression measurements. 相似文献
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《Cell reports》2020,30(4):1152-1163.e4
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