The Biogeochemical Cycle of Methane in the Coastal Zone and Littoral of the Kandalaksha Bay of the White Sea

Microbiological and biogeochemical investigations of the processes of methane production (MP) and methane oxidation (MO) in the coastal waters and littoral of the Kandalaksha Bay of the White Sea were carried out. The studies were conducted in the coastal zones and in the water areas of the Kandalaksha Preserve, Moscow State University White Sea Biological Station, and the Zoological Institute (RAS) biological station in August 1999, 2000, and 2001 and in March 2001. The rate of CO₂ assimilation in the shallow and littoral sediments was 35–27800 g C/(dm³ day) in summer and 32.8–88.9 g C/(dm³ day) in winter. The maximal rates of MP were observed in the littoral sediments in the zone of macrophyte decomposition, in local depressions, and in the estuary of a freshwater creek (up to 113 l/(dm³ day)). The maximal level of MO was observed in the shallow estuarine sediments (up to 2450 l/(dm³ day)). During the winter season, at the temperature of –0.5 to 0.5°C, the MP rate in the littoral sediments was 0.02–0.3 l/(dm³ day), while the MO rate was 0.06–0.7 l/(dm³ day). The isotopic data obtained indicate that the C_org of the mats and of the upper sediment layers is enriched with the heavy ¹³C isotope by 1–4 as compared to the C_org of the suspension. A striking difference was found between the levels of methane emission by the typical littoral microlandscapes. In fine sediments, the average emission was 675 l CH₄/(m² day); in stormy discharge stretch sediments, it was 1670 l CH₄/(m² day); and under stones and in silted pits, 1370 l CH₄/(m²day). The calculation, performed with consideration of the microlandscape areas with a high production, allowed the CH₄ production of 1 km² of the littoral to be estimated as 192–300 l CH₄/(km² day).     

典型温带雨养泥炭沼泽湿地地下部二氧化碳和甲烷浓度变化规律及其影响因素

为研究北方泥炭沼泽湿地二氧化碳(CO₂)和甲烷(CH₄)浓度随深度的变化规律及其影响因素,选取欧洲北部典型雨养泥炭地贝尔山湿地(BBM)和舒特兹山湿地(SBM)两个采样点,通过原位采集泥炭剖面温室气体、孔隙水以及土壤样品,结合傅里叶变换红外光谱(FTIR)技术、碳氮同位素技术,探讨泥炭土壤的分解程度及温室气体浓度变化的关系。研究结果表明:(1)BBM采样点地下部的CO₂浓度变化规律总体呈现随深度波动减少趋势,值多在3000μmol/L附近波动,最大值为4210.74μmol/L(120 cm),SBM采样点的CO₂浓度随深度先增后减,60 cm以上在1800μmol/L附近波动,60 cm以下在3000μmol/L附近波动,最大值为4191.94μmol/L(90 cm);BBM和SBM地下部CH₄浓度都随深度增大,并且在60cm以下浓度增加较快,BBM最大值为735.90μmol/L(260 cm),SBM最大值为543.51μmol/L(170 cm)。(2)BBM和SBM...     

Bacterioplankton Abundance and Activity in a Small Hypertrophic Stratified Lake

Bacterioplankton abundance and production were followed during one decade (1991–2001) in the hypertrophic and steeply stratified small Lake Verevi (Estonia). The lake is generally dimictic. However, a partly meromictic status could be formed in specific meteorological conditions as occurred in springs of 2000 and 2001. The abundance of bacteria in Lake Verevi is highly variable (0.70 to 22 × 10⁶ cells ml⁻¹) and generally the highest in anoxic hypolimnetic water. In 2000–2001, the bacterial abundance in the hypolimnion increased probably due to meromixis. During a productive season, heterotrophic bacteria were able to consume about 10–40% of primary production in the epilimnion. Our study showed that bacterioplankton in the epilimnion was top-down controlled by predators, while in metalimnion bacteria were dependent on energy and carbon sources (bottom-up regulated). Below the thermocline hypolimnetic bacteria mineralized organic matter what led to the depletion of oxygen and created anoxic hypolimnion where rich mineral nutrient and sulphide concentrations coexisted with high bacterial numbers.     

Significance of bacterial ectoenzymes in aquatic environments

The report presents studies on temporal and spatial variations of kinetics (Vmax and Km) of bacterial ectoenzyme activity (-glucosidase - Glc, leucine aminopeptidase - Leu-amp) in the naturally eutrophic Plusee. Glc and Leu-amp activity were positively correlated with the flux of polymeric materials (polysaccharides, proteins) in the lake. Glc activity was low when algal populations grew actively, but during the algal bloom breakdown Glc activity increased rapidly. Leu-amp displayed the highest rates of activity in the epilimnion and was tightly coupled to bacterial production. The synthesis of studied ectoenzymes was under control of a repression/derepression mechanism. The significance of ectoenzymes for the transformation and bacterial utilization of organic matter, and their role in the microbial loop in aquatic environments is discussed.     

Microbiological Explorations in the Northern Part of the Barents Sea in Early Winter

The total number of microorganisms and rates of microbial processes of the carbon cycle were determined in snow, sea ice, water, and seafloor sediments of the northern part of the Barents Sea from September to October, 1998. The explorations were carried out in two areas: along the transection from Franz Josef Land to Victoria Island and along the continental slope region covered with solid ice at latitude 81°–82° N and longitude 37°–39° E. At the time of study, the ice cover was represented by thick one-year old ice (up to 1.2 m), perennial ice (up to 1.85 m), and pack ice. The number of bacteria in the snow cover, sea ice, and seawater was 12 to 14, 50 to 110, and 10 to 240 × 10³ cells/ml, respectively. Rates of dark CO₂ assimilation, glucose utilization, and methane oxidation by bacteria were determined. The highest rate of microbial processes was found in samples of the lowermost newly formed sea ice. The lowest level of activity for all processes was observed in melted snow water. A direct relation was shown between the concentration of C_org, the bacterial biomass, and the values of ¹³C_org in mixtures of melted snow and ice. The number of microorganisms and rates of microbial processes in seafloor sediments measured at the stations on the continental slope are comparable to those in the central part of the Barents Sea and the northern part of the Kara Sea.     

Intensity of the Microbiological Processes of the Methane Cycle in Different Types of Baltic Lakes

The intensity of the microbiological processes of methane formation (MF) and methane oxidation (MO) was determined in the sediments and water of different types of Baltic lakes. The emission of methane from the lake sediments and methane distribution in the water column of the lakes were studied as functions of the lake productivity and hydrologic conditions. During summers, the intensity of MF in the lake sediments and waters varied from 0.001 to 106 ml CH₄/(dm³ day) and from 0 to 3.2 ml CH₄/(l day), respectively, and the intensity of MO in the sediments and water varied from 0 to 11.2 ml CH₄/(dm³ day) and from 0 to 1.1 ml CH₄/(l day), respectively. The total methane production (MP) in the lakes varied from 15 to 5000 ml CH₄/(m² day). In anoxic waters, the MP comprised 9–18% of the total PM in the lakes. The consumption of organic carbon for methanogenesis varied from 0.03 to 9.7 g/(m² day). The role of the methane cycle in the degradation of organic matter in the lakes increased with their productivity.     

Methane as an Organic Matter Source and the Trophic Basis of a Laptev Sea Cold Seep Microbial Community

An area of cold methane seeps at the bottom of the Laptev Sea was investigated. High rates of methane oxidation were revealed in the sediments and in the water column. Anaerobic methane oxidation carried out by the ANME-2 a/b consortium was coupled to sulfate reduction. Bacteria of the genera Sulfurovum and Arcobacter were the agents of the sulfur cycle. Methane unconsumed in the sediments diffused into the near-bottom water, where it was oxidized by methanotrophic bacteria. Methanotrophic activity was essential for development of symbiotrophic tubeworms of the upper sediment layers, which were responsible for the process of bioturbation.     

The Effect of Mineral Particulate Matter on the Productive Characteristics of Bacterioplankton and the Degradation of Labile Organic Material

The effect of mineral particulate matter on the population of bacterioplankton, its aggregation, and productive characteristics was studied in model experiments with different concentrations of particulate kaolin and the same concentration of organic substance (sodium humate). It was found that the presence of mineral particulate matter stimulated the aggregation of bacterioplankton, improved bacterial production, and extended the productive period of bacterioplankton. The integral specific production of aggregated bacterioplankton was higher than that of free-swimming bacterioplankton. The energy metabolic coefficient K ₂ of bacterioplankton in the presence of mineral particulate matter was higher than in its absence.     

典型冷暖季沉水植物凋落物分解特性及沉积物微生物群落变化

为研究湿地沉水植物腐败分解对水体的污染状况,选择典型沉水植物金鱼藻（暖季植物）和菹草（冷季植物）进行了为期60 d的凋落物分解实验。结果表明金鱼藻和菹草凋落物分解规律相似,0—15 d快速分解,15—60 d缓慢分解,60 d凋落物失重率分别达到60.43%和66.72%。菹草的有机物释放量明显高于金鱼藻,N和P释放量相反,分解释放的N主要是NH4+-N和有机氮。三维荧光光谱（Excitation-Emission Matrix Spectroscopy, EEMs）结合平行因子分析法解析出一种类色氨酸物质C2和3种类腐殖质物质C1、C3、C4,易降解的类色氨酸有机物先增加后减少,难降解的类富里酸和类腐殖酸有机物逐渐增加。EEMs和四种组分的最大荧光强度百分比表明,溶解性有机物（Dissolved organic matter, DOM）在0—15 d以易降解有机物为主,15—60 d以难降解有机物为主。两种植物凋落物分解释放的DOM含量及特性不同,整体上呈低腐殖化特征,可能是水中难降解DOM的一个重要来源。植物凋落物的分解促进了沉积物中微生物的丰富度,降低了微生物的多样性;参与分解的主要微生物包括4 d时的Pseudomonas属（26%—35%）、15 d和30 d时的Malikia属（>8%）和Bacillus属（2.6%—9%）,分解难降解有机物的微生物逐渐增加,如Flavobacterium属;沉积物中微生物群落结构的变化受营养物质可利用性变化的影响。分析发现植物凋落物分解对水质的影响具有阶段性,0—15 d,N和P释放量增加暂时导致了水质恶化;15—60 d,N和P释放量降低,难降解有机物含量逐渐增加,可能会加剧水体甚至是沉积物的腐殖化程度。因此,在植物衰亡期应及时打捞或者做好植物平衡收割管理,避免因植物大量腐败导致水质恶化。     

Impact of Anthropogenic Organic Matter on the Distribution Patterns of Sediment Microbial Community from the Yangtze River,China

Abstract

How microbes respond to substantial and increasing anthropogenic disturbance remains an open question in river systems. We tested the hypothesis that the source and distribution of anthropogenic organic matter (OM) were significant factors affecting the spatial variation of the microbial community composition of the Yangtze River sediments. Bulk geochemical proxies and lignin phenols suggested a general decrease of terrestrial C3 plants or soil OM input from the middle to the lower reaches. Fecal sterols inferred higher sewage contamination levels in the middle reaches. Polycyclic aromatic hydrocarbons (PAHs) distribution indicated a dominant biomass and coal combustion signal in the middle reaches, whereas a mixed source including petroleum combustion in the lower reaches. Phylogenetic analysis revealed a large portion of Methanobacteria and Verrucomicrobia enriched in the middle reaches, whereas OM-degrading bacteria, including Flavobacteria, Acidobacteria, and Alphaproteobacteria were dominant in the lower reaches. Quantitative PCR analyses and multivariate analysis further demonstrated that sources and distribution of OM had combined effects in shaping alpha and beta-diversity of sediment microbial communities. Sewage discharge and incomplete OM combustion, respectively, were associated with Methylococcaceae, Chloroflexi, and Bacteroidetes groups. This study provides a foundation for further understanding of the river sediment microbial composition, considering the continued increase of anthropogenic influences.     

海洋微型生物储碳过程与机制概论

在全球气候环境演变的背景下,认识海洋微型生物对碳循环的贡献,需要了解其过程和机制.最近提出的“微型生物碳泵”理论阐释了海洋储碳的一个新机制:微型生物活动把溶解有机碳从活性向惰性转化,从而构成了海洋储碳.这个过程当中,自养与异养细菌、病毒、原生动物等具有不同生理特性微型生物类群扮演着不同的生态角色,本文将围绕微型生物碳泵主线分别论述之.     

Effect of Preliminary Filtration on the Functional Characteristics of Bacterioplankton from Lake Khanka

The dependence of the functional characteristics of bacterioplankton from the loess of Lake Khanka on the pore size of filtering materials was investigated. Soluble organic matter (SOM), bacteria, and bacterial consumers adsorbed on particles suspended in the lake water were found to filter differently depending on the pore size of the filtering material. Filters with pore size 4.5 m (filters II) retained up to 20% of SOM and 20–30% of bacterial cells. Filters III with pore size 2.87 m retained almost 50% of SOM and about 40% of bacteria. The double layer of gauze no. 72 (referred to as filter I) with pores size 40 m was unable to completely retain bacterial consumers. In the case of filtrates I and II, the generation time of bacterioplankton decreased with its increasing average daily concentration. In the case of filtrate III, the generation time of bacterioplankton was minimum and did not depend on its concentration. Oxygen consumption rates per one bacterial cell and per unit biomass in filtrates increased with decreasing pore size of the filters through which they had passed. The bacterial biomass and oxygen consumption rate increased exponentially in filtrates III and logarithmically in filtrates I.     

Major contribution of sulfide-derived sulfur to the benthic food web in a large freshwater lake

In freshwater systems, contributions of chemosynthetic products by sulfur-oxidizing bacteria in sediments as nutritional resources in benthic food webs remain unclear, even though chemosynthetic products might be an important nutritional resource for benthic food webs in deep-sea hydrothermal vents and shallow marine systems. To study geochemical aspects of this trophic pathway, we sampled sediment cores and benthic animals at two sites (90 and 50 m water depths) in the largest freshwater (mesotrophic) lake in Japan: Lake Biwa. Stable carbon, nitrogen, and sulfur isotopes of the sediments and animals were measured to elucidate the sulfur nutritional resources for the benthic food web precisely by calculating the contributions of the incorporation of sulfide-derived sulfur to the biomass and of the biogeochemical sulfur cycle supporting the sulfur nutritional resource. The recovered sediment cores showed increases in ³⁴S-depleted sulfide at 5 cm sediment depth and showed low sulfide concentration with high δ³⁴S in deeper layers, suggesting an association of microbial activities with sulfate reduction and sulfide oxidation in the sediments. The sulfur-oxidizing bacteria may contribute to benthic animal biomass. Calculations based on the biomass, sulfur content, and contribution to sulfide-derived sulfur of each animal comprising the benthic food web revealed that 58%–67% of the total biomass sulfur in the benthic food web of Lake Biwa is occupied by sulfide-derived sulfur. Such a large contribution implies that the chemosynthetic products of sulfur-oxidizing bacteria are important nutritional resources supporting benthic food webs in the lake ecosystems, at least in terms of sulfur. The results present a new trophic pathway for sulfur that has been overlooked in lake ecosystems with low-sulfate concentrations.     

土壤有机质和外源有机物对甲烷产生的影响

对土壤有机质含量及组分、外源有机物和根系分泌对甲烷产生的影响作了综述。土壤产甲烷量和甲烷排放量随有机质含量增加而提高,与土壤中易矿化有机碳或沸水浸提有机碳含量呈显著相关。外源有机碳加入促进了土壤排放甲,刺激效果与外源有机碳的用量和组成有关。还原力强的有机物如纤维素和半纤维素较还原力弱的有机物如类脂和多糖能够产生更多的甲烷。甲醇、甲基化氨基酸等无其它微生物竞争利用的有机物能被产甲烷菌更多地转化成甲烷。植物根系分泌物也促进甲烷的产生,促进作用大小与植物种类及分泌物的数量和质量有关。外源有机物通过3种方式促进土壤甲烷产生;提高土壤的甲烷底物供应量,降低土壤氧化还原电位,刺激土壤原有有机碳的转化。     

The Distribution of Mercury in the Sediments of Eight Saskatchewan Lakes

Eight lakes located in the southern half of Saskatchewan were sampled in May and June, 1987, to determine the concentration and spatial distribution of mercury in their surface sediments. Katepwa and Buffalo Pound lakes had maximum total mercury sediment concentrations of 0.158 and 0.100 μg · g⁻¹ dry weight respectively, while in the other six lakes the mercury concentration was never greater than 0.04 μg · g⁻¹ dw. Despite this difference in mercury concentration in the sediments of the lakes, walleye sampled from them have high mercury concentrations exceeding 0.5 μ · g⁻¹ (wet weight).     

Enumeration of Active Cells in the Bacterioplankton of the Rybinsk Reservoir Using 5-Cyano-2,3-Ditolyl Tetrazolium Chloride: A Comparison with Other Methods

The enumeration of actively respiring bacterial cells in different biotopes of the littoral zone of the Rybinsk Reservoir during the spring period of ice thaw using the fluorescent dye 5-cyano-2,3-ditolyl tetrazolium chloride showed that bacterial communities growing on the bottom surface of the ice cover and in water overgrown by higher aquatic plants were most active. The number of active cells among individual bacterial cells averaged 20% and reached about 40% among aggregated and filamentous bacterial cells. The results of the count of active bacteria by this method were compared with those obtained by other methods.     

Transport of seston in the karstic hydrosystem of the Plitvice Lakes (Croatia)

Research into spatial and temporal variation in seston transport was carried out during the year 2000 on three reaches on the longitudinal profile of the karstic cascading system of the Plitvice Lakes in Croatia. The three investigated reaches were (i) a channel over a barrier with low gradient; (ii) flow through a deep lake; and (iii) a channel with cascades and a steep gradient. The aim of the study was to establish the influence of physiographical and hydrological differences of these reaches on the quality and quantity of seston transport and food resources in the seston. To calculate the seston transport, we measured: total suspended matter (TSM), particulate inorganic matter (PIM), particulate organic matter (POM), chlorophyll-a (chl-a), heterotrophic bacteria and discharge. The PIM contribution from TSM ranged between 60 and 90%, while the percentage of POM in TSM was the highest in summer and ranged from 33 to 46%. POM and discharge were significantly negatively correlated (r = −0.43, P < 0.05). For the transport of TSM, PIM, POM and chlorophyll-a statistically significant differences between the three reaches were established. In a principal component analysis, 86% of the variance was explained by the first two factors. The first factor corresponded well with net transport of TSM, PIM, POM and chl-a and distinguished investigated reaches in two groups: the 1^st group with increasing (reaches with low gradient and with high gradient), and the 2nd group with decreasing net seston transport (reach with flow through a deep lake). The second factor corresponded strongly with discharge and distinguished investigated reaches according to their temporal variability. Electronic Supplementary Material Supplementary material is available in the online version of this article at and is accessible for authorized users Handling editor: J. Padisak     

Estimation of Standing Stock and Decomposition Rates of Labile Organic Matter in Waters of Novorossiisk Bay,Black Sea

The annual dynamics of the decomposition rate, standing stock, and residence time of labile organic matter as an index of full self-purification were investigated in Novorossiisk Bay, Black Sea. The results are suggestive of fairly effective processes of biological self-purification in polluted waters of the bay. The decomposition rate was highest (0.3–0.7 mgO₂/l per day) during the summer, and it decreased by 4–8 times in winter. The residence time of labile organic matter was 97–104 days in winter and 8–11 days in summer. Oxygen consumption rates measured in different areas of the bay conformed to their trophic status and were not above the normal level for summer.     

Novel archaeal macrocyclic diether core membrane lipids in a methane-derived carbonate crust from a mud volcano in the Sorokin Trough, NE Black Sea

A methane-derived carbonate crust was collected from the recently discovered NIOZ mud volcano in the Sorokin Trough, NE Black Sea during the 11th Training-through-Research cruise of the R/V Professor Logachev. Among several specific bacterial and archaeal membrane lipids present in this crust, two novel macrocyclic diphytanyl glycerol diethers, containing one or two cyclopentane rings, were detected. Their structures were tentatively identified based on the interpretation of mass spectra, comparison with previously reported mass spectral data, and a hydrogenation experiment. This macrocyclic type of archaeal core membrane diether lipid has so far been identified only in the deep-sea hydrothermal vent methanogen Methanococcus jannaschii. Here, we provide the first evidence that these macrocyclic diethers can also contain internal cyclopentane rings. The molecular structure of the novel diethers resembles that of dibiphytanyl tetraethers in which biphytane chains, containing one and two pentacyclic rings, also occur. Such tetraethers were abundant in the crust. Compound-specific isotope measurements revealed delta13C values of -104 to -111/1000 for these new archaeal lipids, indicating that they are derived from methanotrophic archaea acting within anaerobic methane-oxidizing consortia, which subsequently induce authigenic carbonate formation.     

The Process of Microbial Sulfate Reduction in Sediments of the Coastal Zone and Littoral of the Kandalaksha Bay of the White Sea

Microbiological and biogeochemical investigations of the coastal zone and the littoral of the Kandalaksha Bay of the White Sea were carried out. The material for investigations was obtained in the series of expeditions of the Institute of Microbiology, Russian Academy of Sciences, in August 1999, 2000, 2001, and in March 2003. The studies were conducted on the littoral and in the water area of the Kandalaksha Preserve, the Moscow University Belomorsk Biological Station, and the Zoological Institute Biological Station, Russian Academy of Sciences. Sediment sampling on the littoral was carried out in the typical microlandscapes differing in the sediment properties and macrobenthos distribution. The maximal sulfate reduction rate (SRR) was shown for the shallow part of the Chernorechenskaya Bay (up to 2550 g S/(dm³ day)) and in the Bab'ye More Bay (up to 3191 g S/(dm³ day)). During the winter season, at a temperature of –0.5 × 0.5°C, the SRR in the sediments of the Kartesh Bay was 7.9 × 13 g S/(dm³ day). In the widest limits, the SRR values varied in the sediment cores sampled on the littoral. The minimal values (11 g S/(dm³ day)) were obtained in the core samples on the silt–sandy littoral. The littoral finely dispersed sediments rich in organic matter were characterized by high SRR values (524–1413 g S/(dm³ day)). The maximal SRR values were shown for the sediments present within the stretch of decomposing macrophytes, in local pits at the lower littoral waterline, and in the mouth of a freshwater stream (51–159 mg S/(dm³ day)). A sharp difference in the level of H₂S production in the type microlandscapes was shown. The average hydrogen sulfide production in finely dispersed sediments constituted 125 mg S/(m² day); in stormy discharge deposits, 1950 mg S/(m² day); in depressions under stones and in silted pits, 4300 mg S/(m² day). A calculation made with regard to the area of microlandscapes with increased productivity shows that the daily H₂S production per 1 km² of the littoral (August) is 60.8 to 202 kg S/(km² day), while the organic carbon consumption for sulfate reduction per 1 km² of the littoral is 46 to 152 kg C_org/(km² day).