Evolutionary Engineering Improves Tolerance for Replacement Jet Fuels in Saccharomyces cerevisiae

Monoterpenes are liquid hydrocarbons with applications ranging from flavor and fragrance to replacement jet fuel. Their toxicity, however, presents a major challenge for microbial synthesis. Here we evolved limonene-tolerant Saccharomyces cerevisiae strains and sequenced six strains across the 200-generation evolutionary time course. Mutations were found in the tricalbin proteins Tcb2p and Tcb3p. Genomic reconstruction in the parent strain showed that truncation of a single protein (tTcb3p^1-989), but not its complete deletion, was sufficient to recover the evolved phenotype improving limonene fitness 9-fold. tTcb3p^1-989 increased tolerance toward two other monoterpenes (β-pinene and myrcene) 11- and 8-fold, respectively, and tolerance toward the biojet fuel blend AMJ-700t (10% cymene, 50% limonene, 40% farnesene) 4-fold. tTcb3p^1-989 is the first example of successful engineering of phase tolerance and creates opportunities for production of the highly toxic C₁₀ alkenes in yeast.     

Engineering the productivity of recombinant Escherichia coli for limonene formation from glycerol in minimal media

The efficiency and productivity of cellular biocatalysts play a key role in the industrial synthesis of fine and bulk chemicals. This study focuses on optimizing the synthesis of (S)‐limonene from glycerol and glucose as carbon sources using recombinant Escherichia coli. The cyclic monoterpene limonene is extensively used in the fragrance, food, and cosmetic industries. Recently, limonene also gained interest as alternative jet fuel of biological origin. Key parameters that limit the (S)‐limonene yield, related to genetics, physiology, and reaction engineering, were identified. The growth‐dependent production of (S)‐limonene was shown for the first time in minimal media. E. coli BL21 (DE3) was chosen as the preferred host strain, as it showed low acetate formation, fast growth, and high productivity. A two‐liquid phase fed‐batch fermentation with glucose as the sole carbon and energy source resulted in the formation of 700 mg L_org^–1 (S)‐limonene. Specific activities of 75 mU g_cdw^–1 were reached, but decreased relatively quickly. The use of glycerol as a carbon source resulted in a prolonged growth and production phase (specific activities of ≥50 mU g_cdw^–1) leading to a final (S)‐limonene concentration of 2,700 mg L_org^–1. Although geranyl diphosphate (GPP) synthase had a low solubility, its availability appeared not to limit (S)‐limonene formation in vivo under the conditions investigated. GPP rerouting towards endogenous farnesyl diphosphate (FPP) formation also did not limit (S)‐limonene production. The two‐liquid phase fed‐batch setup led to the highest monoterpene concentration obtained with a recombinant microbial biocatalyst to date.     

Monoterpene emission and monoterpene synthase activities in the Mediterranean evergreen oak Quercus ilex L. grown at elevated CO2 concentrations

Monoterpene emissions, monoterpene synthase activities, photosynthesis, fluorescence yield in the dark and drought stress indicators (stomatal conductance and mid‐day water potential) were concurrently measured under similar temperature and illumination in current‐year leaves of Quercus ilex L. of plants grown in open‐top chambers at ambient (350 ppm) and elevated (700 ppm) CO₂. The study was undertaken to understand the effect of CO₂ on monoterpene biosynthesis, and to predict and parameterize the biogenic emissions at growing CO₂ concentrations. The results of the 1998 and 1999 studies show that at elevated CO₂, and in the absence of persistent environmental stresses, photosynthesis was stimulated with respect to ambient CO₂, but that the emission of the three most abundantly emitted monoterpenes (α‐pinene, sabinene and β‐pinene) was inhibited by approximately 68%. The enzyme activities of the monoterpene synthases catalysing the formation of the three monoterpenes were also inhibited at elevated CO₂ and an excellent relationship was found between monoterpene emission and activity of the corresponding enzyme both at ambient and elevated CO₂. Interestingly, however, limonene emission was enhanced in conditions of elevated CO₂ as it was also the corresponding synthase. The ratio between enzyme activity and emission of the three main monoterpenes was high (above 20) at ambient CO₂ but it was below 10 at elevated CO₂ and, for limonene, on both treatments. Our results indicate that the overall emission of monoterpenes at elevated CO₂ will be inhibited because of a concurrent, strong down‐regulation of monoterpene synthase activities. When the enzyme activity does not change, as for limonene, the high photosynthetic carbon availability at elevated CO₂ conditions may even stimulate emission. The results of the 1997 study show that severe and persistent drought, as commonly occurs in the Mediterranean, may inhibit both photosynthesis and monoterpene (α‐pinene) emission, particularly at ambient CO₂. Thus, emission is probably limited by photosynthetic carbon availability; the effect of elevated CO₂per se is not apparent if drought, and perhaps other environmental stresses, are also present.     

Xylose‐fermenting Pichia stipitis by genome shuffling for improved ethanol production

Xylose fermentation is necessary for the bioconversion of lignocellulose to ethanol as fuel, but wild‐type Saccharomyces cerevisiae strains cannot fully metabolize xylose. Several efforts have been made to obtain microbial strains with enhanced xylose fermentation. However, xylose fermentation remains a serious challenge because of the complexity of lignocellulosic biomass hydrolysates. Genome shuffling has been widely used for the rapid improvement of industrially important microbial strains. After two rounds of genome shuffling, a genetically stable, high‐ethanol‐producing strain was obtained. Designated as TJ2‐3, this strain could ferment xylose and produce 1.5 times more ethanol than wild‐type Pichia stipitis after fermentation for 96 h. The acridine orange and propidium iodide uptake assays showed that the maintenance of yeast cell membrane integrity is important for ethanol fermentation. This study highlights the importance of genome shuffling in P. stipitis as an effective method for enhancing the productivity of industrial strains.     

Spruce budworm feeding and oviposition are stimulated by monoterpenes in white spruce epicuticular waxes

Monoterpenes, source of the distinctive odor of conifers, are generally considered plant defensive compounds. However, they are also known to act as long‐range insect attractants, as they are volatile and permeate forest airspaces. Moreover, they are lipid soluble and can be absorbed into plant epicuticular waxes. We test their role in short‐range host plant choice by both adult females and larvae of a folivorous forest pest (Choristoneura fumiferana). We conducted laboratory assays testing the responses of Eastern spruce budworm to an artificial monoterpene mix (α‐pinene, β‐pinene, limonene, myrcene) and to white spruce (Picea glauca) epicuticular waxes in closed arenas. Ovipositing females preferred filter paper discs treated with P. glauca waxes to controls, and preferred the waxes + monoterpenes treatment to waxes alone. However, females showed no preference between the monoterpene‐treated disc and the control when presented without waxes. Feeding larvae prefered wax discs to control discs. They also consumed discs treated with realistic monoterpene concentrations and wax preferentially over wax‐only discs, but showed no preference between extremely high monoterpene concentrations and wax‐only controls. In an insect‐free assay, P. glauca epicuticular wax decreased monoterpene volatilization. These results suggest that P. glauca waxes and realistic concentrations of monoterpenes are stimulatory to both egg‐laying females and feeding larvae, and that their effects are synergistic.     

Effects of organic solvents on membrane of<Emphasis Type="Italic">Taxus cuspidata</Emphasis> cells in

The effects of organic solvents (oleic acid and dibutyl phthalate) on viability and membrane integrity of Taxus cuspidata cells were investigated in two-liquid-phase suspension cultures. It has been found that the cell viability, electrical conductivity and concentration of malonyl dialdehyde did not change obviously when the content of oleic acid or dibutyl phthalate was 2% (v/v), but varied markedly when the contents of oleic acid or dibutyl phthalate were raised to 6% (v/v) or more, indicating that the organic solvents at higher concentrations severely affected the cell membrane permeability.     

Cytosolic monoterpene biosynthesis is supported by plastid‐generated geranyl diphosphate substrate in transgenic tomato fruits

Geranyl diphosphate (GPP), the precursor of most monoterpenes, is synthesized in plastids from dimethylallyl diphosphate and isopentenyl diphosphate by GPP synthases (GPPSs). In heterodimeric GPPSs, a non‐catalytic small subunit (GPPS‐SSU) interacts with a catalytic large subunit, such as geranylgeranyl diphosphate synthase, and determines its product specificity. Here, snapdragon (Antirrhinum majus) GPPS‐SSU was over‐expressed in tomato fruits under the control of the fruit ripening‐specific polygalacturonase promoter to divert the metabolic flux from carotenoid formation towards GPP and monoterpene biosynthesis. Transgenic tomato fruits produced monoterpenes, including geraniol, geranial, neral, citronellol and citronellal, while exhibiting reduced carotenoid content. Co‐expression of the Ocimum basilicum geraniol synthase (GES) gene with snapdragon GPPS‐SSU led to a more than threefold increase in monoterpene formation in tomato fruits relative to the parental GES line, indicating that the produced GPP can be used by plastidic monoterpene synthases. Co‐expression of snapdragon GPPS‐SSU with the O. basilicum α–zingiberene synthase (ZIS) gene encoding a cytosolic terpene synthase that has been shown to possess both sesqui‐ and monoterpene synthase activities resulted in increased levels of ZIS‐derived monoterpene products compared to fruits expressing ZIS alone. These results suggest that re‐direction of the metabolic flux towards GPP in plastids also increases the cytosolic pool of GPP available for monoterpene synthesis in this compartment via GPP export from plastids.     

GENETIC VARIATION IN A FUNGAL PATHOGEN: RESPONSE TO HOST DEFENSIVE CHEMICALS

In response to infection by shoot infecting pathogens, Scots pine releases cortical resin into affected tissues. The resin contains a mixture of monoterpene compounds (α-pinene, β-pinene, 3-carene, β-myrcene, limonene and β-phellandrene) that retard the growth of a range of pathogens. The proportion of each monoterpene in the resin shows substantial variation among trees within a population. Thus pathogens on different trees encounter quite different monoterpene environments. To investigate the evolutionary response of pathogens to the chemically heterogeneous environment provided by Scots pine, isolates of the ascomycete canker pathogen Crumenulopsis sororia were collected from trees within a range of natural Scots pine populations. Growth rates of these isolates were measured in the presence and absence of five host monoterpenes. Substantial heritable variation for growth rate in the presence and absence of monoterpenes, and for monoterpene tolerance was recorded, suggesting the potential for the evolution of chemically specialized pathogen subpopulations on different trees within a wood. However, genetic correlations between growth rates in different monoterpene environments and between tolerance of different monoterpenes were either positive or non-significant, and there was no evidence of “tradeoffs” in performance under different monoterpene regimes. The results suggest that, on its own, the presence of monoterpene variability within Scots pine will not lead to disruptive selection on the C. sororia population. The relationship between defensive chemical diversity and pest resistance is discussed in the light of these results.     

Modeling bacterial contamination of fuel ethanol fermentation

The emergence of antibiotic‐resistant bacteria may limit the effectiveness of antibiotics to treat bacterial contamination in fuel ethanol plants, and therefore, new antibacterial intervention methods and tools to test their application are needed. Using shake‐flask cultures of Saccharomyces cerevisiae grown on saccharified corn mash and strains of lactic acid bacteria isolated from a dry‐grind ethanol facility, a simple model to simulate bacterial contamination and infection was developed. Challenging the model with 10⁸ CFU/mL Lactobacillus fermentum decreased ethanol yield by 27% and increased residual glucose from 6.2 to 45.5 g/L. The magnitude of the effect was proportional to the initial bacterial load, with 10⁵ CFU/mL L. fermentum still producing an 8% decrease in ethanol and a 3.2‐fold increase in residual glucose. Infection was also dependent on the bacterial species used to challenge the fermentation, as neither L. delbrueckii ATCC 4797 nor L. amylovorus 0315‐7B produced a significant decrease in ethanol when inoculated at a density of 10⁸ CFU/mL. In the shake‐flask model, treatment with 2 µg/mL virginiamycin mitigated the infection when challenged with a susceptible strain of L. fermentum (MIC for virginiamycin ≤2 ppm), but treatment was ineffective at treating infection by a resistant strain of L. fermentum (MIC = 16 ppm). The model may find application in developing new antibacterial agents and management practices for use in controlling contamination in the fuel ethanol industry. Biotechnol. Bioeng. 2009;103: 117–122. Published 2008 Wiley Periodicals, Inc.     

Attack by Hylobius warreni on grafted lodgepole pine and its relationships with monoterpene composition and scion : rootstock diameter ratio

1 A lodgepole pine seed orchard at the Prince George Tree Improvement Station (PGTIS), with up to 60% of grafted trees attacked by the Warren root collar weevil Hylobius warreni was investigated to determine whether relative monoterpene composition or scion : rootstock interactions of grafts affected susceptibility to attack. 2 There was a significant relationship between relative levels of α‐pinene, β‐thujene, β‐pinene, δ‐3‐carene and limonene in scion and rootstock in unattacked trees, indicating a potential effect of the scion monoterpene composition on their composition in the rootstock. 3 Relative content of δ‐3‐carene and β‐phellandrene differed significantly in root stocks of attacked and unattacked trees but, for individual clones, a significant difference was only detected for β‐phellandrene in one clone. δ‐3‐Carene levels may have been too low in the examined trees to exert a strong effect. 4 Interestingly, attack status was significantly associated with two scion monoterpenes: α‐thujene and α‐terpinolene, both of which had higher levels in unattacked than in attacked trees. 5 Warren root collar weevils appear largely unaffected by monoterpene content, but further study is required to determine whether high levels of δ‐3‐carene imparts some level of resistance to attack, and to verify whether the observed effects of scion monoterpenes are real or artefacts of the analysis. 6 Hylobius warreni‐attacked trees had smaller scion : rootstock diameter ratio (i.e. a large rootstock diameter relative to the scion diameter) than unattacked trees. This effect was consistent among clones, and was not due to the absolute diameter of the rootstock or the scion. Trees with increased diameter‐growth at the root collar (e.g. some grafted trees) may have increased susceptibility to attack by H. warreni, or diameter‐growth at the root collar is affected by the attack.     

Seasonal emission of monoterpenes by the Mediterranean tree Quercus ilex in field conditions: Relations with photosynthetic rates, temperature and volatility

The relationships of monoterpene emission with temperature, light, photosynthesis and stomatal conductance (g_s) were studied in Quercus ilex L. trees throughout the four annual seasons under field conditions. The highest monoterpene emission was measured in spring and summer (midday average of 11 μg [g DW]^?1 h^?1), whereas the lowest rates were found in autumn and winter (midday averages of 0.51 and 0.23 μg [g DW]^?1 h^?1, respectively). In spring and summer, limonene was the monoterpene emitted at highest rate (midday averages of 5.27–6.69 μg [g DW]^?1 h^?1), whereas α-pinene was emitted the most in autumn and winter (midday averages of 0.31 μg [g DW]^?1 h^?1). The monoterpenes limonene, α-pinene and β-pinene represented about 75–95% of total detected monoterpenes. The total monoterpene emission rates represented about 0.04% of carbon fixed in autumn, 0.17% in winter, 0.84–2.51% in spring and 1.22–5.13% in summer. Significant correlations of total monoterpene emission with temperature were found when considering either summer emission or the emission over the entire year, whereas significant correlations with net photosynthetic rates were only found when considering summer season. Among individual terpenes, the most volatile, α-pinene and β-pinene, were more correlated with temperature than with net photosynthetic rates whereas the less volatile limonene was more correlated with net photosynthetic rate. Thus, under field conditions it seems that dependency of monoterpene emission on photosynthetic rate or temperature is partly related with volatility of the compounds. Influences of seasonality, temperature, photosynthetic rates and volatility should be considered in inventories and models of emission rates in Mediterranean ecosystems.     

Bacteria isolated from roots and rhizosphere of Vitis vinifera retard water losses,induce abscisic acid accumulation and synthesis of defense‐related terpenes in in vitro cultured grapevine

Eleven bacterial strains were isolated at different soil depths from roots and rhizosphere of grapevines from a commercial vineyard. By 16S rRNA gene sequencing 10 different genera and 8 possible at species level were identified. From them, Bacillus licheniformis Rt4M10 and Pseudomonas fluorescens Rt6M10 were selected according to their characteristics as plant growth promoting rhizobacteria (PGPR). Both produced abscisic acid (ABA), indole‐3‐acetic acid (IAA) and the gibberellins A₁ and A₃ in chemically‐defined medium. They also colonized roots of in vitro grown Vitis vinifera cv. Malbec plants. As result of bacterization ABA levels in 45 days‐old in vitro plants were increased 76‐fold by B. licheniformis and 40‐fold by P. fluorescens as compared to controls. Both bacteria diminished plant water loss rate in correlation with increments of ABA. Twenty and 30 days post bacterization the plants incremented terpenes. The monoterpenes α‐pinene, terpinolene, 4‐carene, limonene, eucalyptol and lilac aldehyde A, and the sesquiterpenes α‐bergamotene, α‐farnesene, nerolidol and farnesol were assessed by gas chromatography‐electron impact mass spectrometry analysis. α‐Pinene and nerolidol were the most abundant (µg per g of tissue in plants bacterized with P. fluorescens). Only α‐pinene, eucalyptol and farnesol were identified at low concentration in non‐bacterized plants treated with ABA, while no terpenes were detected in controls. The results obtained along with others from literature suggest that B. licheniformis and P. fluorescens act as stress alleviators by inducing ABA synthesis so diminishing water losses. These bacteria also elicit synthesis of compounds of plant defense via an ABA independent mechanism.     

Field response of the northern spruce bark beetle Ips duplicatus (Sahlberg) (Coleoptera: Curculionidae,Scolytinae) to different combinations of synthetic pheromone with (−)‐α‐pinene and (+)‐limonene

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Influence of light and temperature on monoterpene emission rates from slash pine

There is a growing awareness of vegetation's role as a source of potentially reactive hydrocarbons that may serve as photochemical oxidant precursors. This study assessed the influence of light and temperature, independently, on monoterpene emissions from slash pine (Pinus elliottii Engelm.). Plants were preconditioned in a growth chamber, then transferred to an environmentally controlled gas exchange chamber. Samples of the chamber atmosphere were collected; the monoterpenes were concentrated cryogenically and measured by gas chromatography. Five monoterpenes (α-pinene, β-pinene, myrcene, limonene, and β-phellandrene) were present in the vapor phase surrounding the plants in sufficient quantity for reliable measurement. Light did not directly influence monoterpene emission rates since the emissions were similar in both the dark and at various light intensities. Monoterpene emission rates increased exponentially with temperature (i. e. emissions depend on temperature in a log-linear manner). The summed emissions of the five monoterpenes ranged from 3 to 21 micrograms C per gram dry weight per hour as temperature was increased from 20 to 46 C. Initially, emission rates from heat-stressed needles were similar to healthy needles, but rates decreased 11% per day. Daily carbon loss through monoterpene emissions accounted for approximately 0.4% of the carbon fixed during photosynthesis.     

Essential‐Oil Variability of Juniperus deltoides R.P.Adams along the East Adriatic Coast – How Many Chemotypes Are There?

The composition of the essential oils isolated from twigs of ten Juniperus deltoides R.P . Adams populations from the east Adriatic coast was determined by GC‐FID and GC/MS analyses. Altogether, 169 compounds were identified, representing 95.6–98.4% of the total oil composition. The oils were dominated by monoterpenes (average content of 61.6%), which are characteristic oil components of species of the Juniperus section. Two monoterpenes, α‐pinene and limonene, were the dominant constituents, comprising on average 46.78% of the essential oils. Statistical methods were deployed to determine the diversity of the terpene classes and the common terpenes between the investigated populations. These statistical analyses revealed the existence of three chemotypes within all populations, i.e., a α‐pinene, limonene, and limonene/α‐pinene type.     

A laboratory high‐throughput glass chamber using dynamic headspace TD‐GC/MS method for the analysis of whole Brassica napus L. plantlet volatiles under cadmium‐related abiotic stress

Introduction

The dynamic headspace sampling technique using thermal desorption, gas chromatography‐mass spectrometry (TD‐GC/MS) is a powerful method for analysing plant emissions of volatile organic compounds (VOCs), and experiments performed in sterile and controlled conditions can be useful for VOC metabolism investigations.

Objective

The main purpose of this study was to set up a laboratory high‐throughput glass chamber for whole plant volatiles analysis. Brassica napus L. plantlets were tested with the developed system to better understand the relationship between low emission of induced terpene and cadmium (Cd)‐related abiotic stress.

Methodology

VOCs emitted by 28‐day‐old Brassica napus L. plantlets cultivated in vitro were trapped with our device using adsorbent cartridges that were desorbed with a thermal desorption unit before cryofocusing with a cooled injection system and programmable temperature vaporising inlet into an HP‐5 ms GC column. Terpene detection and quantitation from chromatogram profiles were acquired using selected ion monitoring (SIM) mode during full scan analysis and mass spectra were obtained with a quadrupole‐type mass spectrometer.

Results

The new trapping method produced reliable qualitative profiles of oilseed rape VOCs. Typical emissions of monoterpenes (myrcene, limonene) and sesquiterpenes (β‐elemene, (E,E)‐α‐farnesene) were found for the different concentrations tested. One‐way analysis of variance for quantitative results of (E,E)‐α‐farnesene emission rates showed a Cd concentration effect.

Conclusion

This inexpensive glass chamber has potential for wide application in laboratory sterile approach and replicated research. Moreover, the non‐invasive dynamic sampling technique could also be used to analyse volatiles under both abiotic and biotic stresses.     

代谢工程改造酿酒酵母合成柠檬烯及其衍生物

柠檬烯及其衍生物紫苏酸作为重要的生物活性天然产物，广泛应用于食品、化妆品、保健品和医药等行业。然而，低效率的植物提取与高能耗的化工合成限制了柠檬烯和紫苏酸的工业合成。本研究在酿酒酵母中通过过氧化物酶体区室化表达绿薄荷来源的柠檬烯合酶，构建获得重组菌株，柠檬烯产量为0.038 mg/L。采用模块化工程分步表达参与柠檬烯合成的基因ERG10、ERG13、tHMGR、ERG12、ERG8、IDI1、MVD1、ERG20ww以及tLS，以研究其对柠檬烯产量的影响。通过增加前体模块，柠檬烯产量增加至1.14 mg/L。采用高拷贝数的质粒表达上述关键基因，柠檬烯的产量显著提高，达到86.74 mg/L，提高至初始菌株产量的4 337倍。以构建的柠檬烯生产菌株为出发菌株，通过表达丹参来源的细胞色素P450酶基因，实现了紫苏酸的生成，其产量达4.42 mg/L，为利用酿酒酵母构建高产单萜类天然产物的细胞工厂奠定了基础。     

Condition-dependent tolerance of monoterpenes in an insect herbivore

The ability of a herbivore to tolerate plant defensive chemicals may vary with the herbivore’s energetic state. We investigated the effect of body condition on the survivorship of individual mountain pine beetles, Dendroctonus ponderosae, exposed to host monoterpenes at concentrations comparable to constitutive and induced levels of defence using fumigant exposure. Body condition index was calculated as the residual mass after fitting the relationship between fresh weight and body size. Differences in survivorship among the four monoterpenes tested (α-pinene, myrcene, terpinolene and limonene) were small. Beetles with a higher body condition index survived high monoterpene concentrations better than those in poorer condition. There was no direct effect of sex, but positive effects of body size and fat content on survivorship favoured females, the sex that pioneers attacks on live trees. Higher body condition index corresponded to both higher fat content and fat-free body mass; the same conclusions about monoterpene identity and size-dependent or energy-dependent tolerance of high monoterpene concentrations held if fat or fat-free body mass were used in place of body condition index. This study highlights the need to consider insect body condition in understanding insect–plant interactions.