Changes in the acoustic behavior of resident bottlenose dolphins near operating vessels

Maritime traffic is an issue of major ecological concern, and vessel noise may be an important source of disturbance for coastal cetaceans. In the Sado estuary, Portugal, core habitat areas of a small resident population of bottlenose dolphins (Tursiops truncatus) overlap with routes of intense maritime traffic, which presents an opportunity to assess vocal responses of these dolphins to specific vessel noise sources. Field recordings of dolphin vocalizations were made from April to November 2011, using a calibrated system. Dolphin behavior and group size were recorded, as well as the operating boat condition (no boats or specific boat type) in a 1,000 m radius. Spectral analyses of vocalizations allowed the categorization and quantitative analysis of echolocation click trains and social calls, including whistles. Mean overall call rates decreased significantly in the presence of operating vessels. Creaks (fast click trains) were significantly reduced in the presence of ferry boats. Significant differences were also observed in the whistles' minimum, maximum, and start frequencies. These changes in call emission rates and temporary shifts in whistles characteristics may be a vocal response to the proximity of operating vessels, facilitating communication in this busy, noisy estuary.     

Interspecies interference and monitoring duration affect detection rates in chew cards

Pest monitoring methods should provide unbiased accurate estimates of pest densities and locations, while also minimizing time‐in‐field and costs. Recent pest mammal monitoring studies have found that chew cards are more effective than conventional mammal monitoring methods, but little experimental work has been done to determine optimal experimental duration or quantify the risks of saturation by one species biasing detections of other species. Here, we used chew cards in three sites within Awarua wetland (Southland, New Zealand) to investigate the optimal amount of time required to detect targeted pest species (rats, possums and mice), and to examine the potential of rats and possums to bias detection rates of other species. We found depressed detections of possums and rats where a contraspecific had been detected on a card, which is consistent with previous studies of a similar duration on interspecies interference. This experiment is the first to analyse the rates at which species detections accrue over the course of a survey, and we found rat detections lagged behind possums for the first four nights. We modelled the effect of survey duration and relative rat abundance on the likelihood of further possum detections. Duration and rat abundance interacted, meaning there are trade‐offs to be considered with regard to duration: shorter durations may avoid the risk of saturation in areas of high pest density, but risk not sampling sparse or neophobic populations. Our data suggest that chew cards remain one of the most sensitive pest monitoring tools for rats and possums, compared to conventional methods such as tracking tunnels and wax tags. In areas of moderate pest densities, we suggest that a duration of five nights is optimal for detecting pests. However, in areas of high pest density the sensitivity of chew cards may render them unsuitable because of saturation and interspecies interference effects.     

Handling dolphin detections from C-PODs,with the development of acoustic parameters for verification and the exploration of species identification possibilities

C-PODs are static passive acoustic monitoring devices used to detect odontocete vocalizations in the range of 20–160 kHz. However, falsely classified detections may be an issue, particularly with broadband species (i.e. many dolphin species) due to anthropogenic and other noise occurring at the same frequency. While porpoise detections are verified using species-specific acoustic parameters, the equivalent does not currently exist for verifying dolphin detections. Development of such parameters would increase the accuracy of dolphin detections and eliminate the need for additional monitoring techniques or devices, reducing the cost of monitoring programmes. Herein, we present parameters based on acoustic characteristics of bottlenose (n = 29), common (n = 19) and Risso’s (n = 99) dolphin click trains, sighted within 1 km of C-PODs during land-based surveys, for in-software verification. Overlap of click train parameters among dolphin species prevented robust species identification; therefore, parameters were devised for these dolphin species collectively using frequency, inter-click interval and click train duration. A data set of 4898 Detection Positive Hours was visually verified using these parameters. The temporal and spatial patterns in the visually verified data were similar to land-based observations, suggesting the parameters operate at an acceptable accuracy. However, 68% of high-, moderate- and low-quality KERNO detections were false-positive. Our results suggest that the accuracy of classifiers and quality class weightings are site-specific, and we highlight the importance of data exploration to make the most appropriate software choices based on the aims of a study.     

Habitat usage of Daubenton's bat (Myotis daubentonii), common pipistrelle (Pipistrellus pipistrellus), and soprano pipistrelle (Pipistrellus pygmaeus) in a North Wales upland river catchment

Distributions of Daubenton's bat (Myotis daubentonii), common pipistrelle, (Pipistrellus pipistrellus), and soprano pipistrelle (Pipistrellus pygmaeus) were investigated along and altitudinal gradient of the Lledr River, Conwy, North Wales, and presence assessed in relation to the water surface condition, presence/absence of bank‐side trees, and elevation. Ultrasound recordings of bats made on timed transects in summer 1999 were used to quantify habitat usage. All species significantly preferred smooth water sections of the river with trees on either one or both banks; P. pygmaeus also preferred smooth water with no trees. Bats avoided rough and cluttered water areas, as rapids may generate high‐frequency echolocation‐interfering noise and cluttered areas present obstacles to flight. In lower river regions, detections of bats reflected the proportion of suitable habitat available. At higher elevations, sufficient habitat was available; however, bats were likely restricted due to other factors such as a less predictable food source. This study emphasizes the importance of riparian habitat, bank‐side trees, and smooth water as foraging habitat for bats in marginal upland areas until a certain elevation, beyond which bats in these areas likely cease to forage. These small‐scale altitudinal differences in habitat selection should be factored in when designing future bat distribution studies and taken into consideration by conservation planners when reviewing habitat requirements of these species in Welsh river valleys, and elsewhere within the United Kingdom.     

Vocal activity rate index: a useful method to infer terrestrial bird abundance with acoustic monitoring

Autonomous recording units have been widely used in a large number of bird studies in recent years, but challenges remain in estimating abundance based on acoustic monitoring. We tested whether vocal activity rate index (VAR; the number of songs per unit time for a species), recorded using autonomous recording units, was related to population abundance in two terrestrial bird species, the European Bee‐eater Merops apiaster and the Dupont's Lark Chersophilus duponti. We took recordings at sites where censuses were also carried out to estimate local populations around recorders. We found a positive and significant relationship for the two monitored species. Although our results are not conclusive, the strong and significant relationship found for both monitored species suggests that VAR may be used to infer bird abundance around recorders in terrestrial species. We describe five logical steps for using the VAR with autonomous recording units in other species to guide future studies.     

Biosonar,dive, and foraging activity of satellite tracked harbor porpoises (Phocoena phocoena)

This study presents bioacoustic recordings in combination with movements and diving behavior of three free‐ranging harbor porpoises (a female and two males) in Danish waters. Each porpoise was equipped with an acoustic data logger (A‐tag), a time‐depth‐recorder, a VHF radio transmitter, and a satellite transmitter. The units were programmed to release after 24 or 72 h. Possible foraging occurred mostly near the surface or at the bottom of a dive. The porpoises showed individual diversity in biosonar activity (<100 to >50,000 clicks per hour) and in dive frequency (6–179 dives per hour). We confirm that wild harbor porpoises use more intense clicks than captive animals. A positive tendency between number of dives and clicks per hour was found for a subadult male, which stayed near shore. It showed a distinct day‐night cycle with low echolocation rates during the day, but five times higher rates and higher dive activity at night. A female traveling in open waters showed no diel rhythm, but its sonar activity was three times higher compared to the males'. Considerable individual differences in dive and echolocation activity could have been influenced by biological and physical factors, but also show behavioral adaptability necessary for survival in a complex coastal environment.     

Habitat associations of bats in a working rangeland landscape

Land‐use change has resulted in rangeland loss and degradation globally. These changes include conversion of native grasslands for row‐crop agriculture as well as degradation of remaining rangeland due to fragmentation and changing disturbance regimes. Understanding how these and other factors influence wildlife use of rangelands is important for conservation and management of wildlife populations. We investigated bat habitat associations in a working rangeland in southeastern North Dakota. We used Petterson d500x acoustic detectors to systematically sample bat activity across the study area on a 1‐km point grid. We identified calls using Sonobat autoclassification software. We detected five species using this working rangeland, which included Lasionycteris noctivagans (2,722 detections), Lasiurus cinereus (2,055 detections), Eptesicus fuscus (749 detections), Lasiurus borealis (62 detections), and Myotis lucifugus (1 detection). We developed generalized linear mixed‐effects models for the four most frequently detected species based on their ecology. The activity of three bat species increased with higher tree cover. While the scale of selection varied between the four species, all three investigated scales were explanatory for at least one bat species. The broad importance of trees to bats in rangelands may put their conservation needs at odds with those of obligate grassland species. Focusing rangeland bat conservation on areas that were treed prior to European settlement, such as riparian forests, can provide important areas for bat conservation while minimizing negative impacts on grassland species.     

Comparison of audio recording system performance for detecting and monitoring songbirds

ABSTRACT Acoustic recording systems are being used more frequently to estimate habitat occupancy or relative abundance, and to monitor population trends over time. A potential concern with digital recording systems is that changes in technology could affect detectability of birds and cause bias in trend estimates based on counts of birds detected. We evaluated several currently available commercial recording systems ranging from low‐cost multipurpose digital recorders to custom‐designed wildlife recorders (US$250–$7000 price range) to examine possible differences among systems in species detection. We made recordings during Breeding Bird Surveys (BBS) counts using several units concurrently, and asked several expert birders to listen to the recordings in a factorial design. We found that birders detected, on average, 10% fewer species on some units compared to others, though there was high variance. Analysis of a subset of recordings, using spectrograms and repeated listening, suggested that ～90% of species on each BBS stop could be clearly detected on all units. The remaining species could be identified on at least one unit, but were hard or impossible to detect on others. We found that the recording unit with the lowest empirical signal‐to‐noise‐ratio (SNR) had the lowest number of birds detected on the BBS recordings, and that frequency‐specific SNR differed among units. Missed detections were likely related to variation in internal noise and frequency‐dependent sensitivity of the units, and were an issue for all systems regardless of price. We caution that researchers using recorders need to consider variation among recording systems in their study design, particularly for long‐term monitoring programs.     

Local habitat use by botos (Amazon river dolphins,Inia geoffrensis) using passive acoustic methods

We monitored the underwater behavior of botos (Inia geoffrensis) using stereo acoustic data loggers to observe their local habitat use and its diel changes at the Mamirauá Sustainable Development Reserve, Brazil. A‐tags were set at five sites in three different habitat types: Lake (low current), Channel (middle current), and Junction (junction of two channels). The presence index during nighttime was significantly greater than during daytime in the Lake and Junction. Underwater movement was estimated from the changing pattern (trajectory) of the relative angle of the sound source from A‐tags. A staying‐type trajectory was dominant in the Lake, although the prevalence of moving‐type trajectory increased at night. More than 80% of detected trajectories were the staying type in the Junction, while moving‐type trajectories dominated in the Channel. The frequency of click trains was greatest in the Lake, followed by the Junction and Channels. The average interpulse interval, which reflects the mean target distance of echolocation, was shortest in the Lake, followed by the Junction and Channel. These results suggest that the botos used the Lake as their primary habitat for active behaviors like foraging, especially at night, and the Junction as their primary habitat for relatively inactive behaviors at night.     

Shark bite injuries on three inshore dolphin species in tropical northwestern Australia

Predation risk has a profound influence on the behavior of marine mammals, affecting grouping patterns and habitat use. Dolphins frequently bear evidence of shark bites, which can provide an indirect measure of predation pressure. Using photo‐identification data, we investigated the prevalence of shark bites on three sympatric species of inshore dolphin, the Australian snubfin (Orcaella heinsohni), Australian humpback (Sousa sahulensis), and Indo‐Pacific bottlenose dolphin (Tursiops aduncus), among four study sites in northwestern Australia. Bite prevalence varied markedly between species, with 72% of snubfin, 46% of humpback, and 18% of bottlenose dolphins exhibiting evidence of shark bites. Binomial logistic regression confirmed a high likelihood of bite presence on snubfin dolphins, and at one particular site for snubfin and bottlenose dolphins. The prevalence of tiger shark (Galeocerdo cuvier) bites on snubfin dolphins was high, and bites attributed to other carcharhinid sharks were observed on all species. While acknowledging methodological differences with other studies, the prevalence of shark bites on snubfin dolphins is among the highest reported for any dolphins, suggesting predation risk represents an important but varying influence thereon. This study provides a baseline for future investigations into the affect of predation risk on the behavioral ecology of these sympatric species.     

Hearing sensation levels of emitted biosonar clicks in an echolocating Atlantic bottlenose dolphin

Emitted biosonar clicks and auditory evoked potential (AEP) responses triggered by the clicks were synchronously recorded during echolocation in an Atlantic bottlenose dolphin (Tursiops truncatus) trained to wear suction-cup EEG electrodes and to detect targets by echolocation. Three targets with target strengths of -34, -28, and -22 dB were used at distances of 2 to 6.5 m for each target. The AEP responses were sorted according to the corresponding emitted click source levels in 5-dB bins and averaged within each bin to extract biosonar click-related AEPs from noise. The AEP amplitudes were measured peak-to-peak and plotted as a function of click source levels for each target type, distance, and target-present or target-absent condition. Hearing sensation levels of the biosonar clicks were evaluated by comparing the functions of the biosonar click-related AEP amplitude-versus-click source level to a function of external (in free field) click-related AEP amplitude-versus-click sound pressure level. The results indicated that the dolphin's hearing sensation levels to her own biosonar clicks were equal to that of external clicks with sound pressure levels 16 to 36 dB lower than the biosonar click source levels, varying with target type, distance, and condition. These data may be assumed to indicate that the bottlenose dolphin possesses effective protection mechanisms to isolate the self-produced intense biosonar beam from the animal's ears during echolocation.     

Improving geographically extensive acoustic survey designs for modeling species occurrence with imperfect detection and misidentification

Acoustic recording units (ARUs) enable geographically extensive surveys of sensitive and elusive species. However, a hidden cost of using ARU data for modeling species occupancy is that prohibitive amounts of human verification may be required to correct species identifications made from automated software. Bat acoustic studies exemplify this challenge because large volumes of echolocation calls could be recorded and automatically classified to species. The standard occupancy model requires aggregating verified recordings to construct confirmed detection/non‐detection datasets. The multistep data processing workflow is not necessarily transparent nor consistent among studies. We share a workflow diagramming strategy that could provide coherency among practitioners. A false‐positive occupancy model is explored that accounts for misclassification errors and enables potential reduction in the number of confirmed detections. Simulations informed by real data were used to evaluate how much confirmation effort could be reduced without sacrificing site occupancy and detection error estimator bias and precision. We found even under a 50% reduction in total confirmation effort, estimator properties were reasonable for our assumed survey design, species‐specific parameter values, and desired precision. For transferability, a fully documented r package, OCacoustic, for implementing a false‐positive occupancy model is provided. Practitioners can apply OCacoustic to optimize their own study design (required sample sizes, number of visits, and confirmation scenarios) for properly implementing a false‐positive occupancy model with bat or other wildlife acoustic data. Additionally, our work highlights the importance of clearly defining research objectives and data processing strategies at the outset to align the study design with desired statistical inferences.     

Diel changes in the movement patterns of Ganges River dolphins monitored using stationed stereo acoustic data loggers

We monitored the underwater movements of Ganges River dolphins using stationed stereo acoustic data loggers. We estimated these movements using changes in the relative angle of the sound source direction (trajectory). Of the total acoustic recordings (66 h), 26.2% contained trajectories of dolphins, and 78.6% of these trajectories involved single animals, suggesting that dolphins tended to swim alone and were localized near the monitoring station. The observed trajectories were categorized as follows: staying type characterized by small changes in the sound source direction, moving type A (moving in the same direction), and moving type B (moving up and down the stream during recording). The average interpulse intervals of sounds in moving types A and B were significantly shorter than that of the staying type, suggesting that dolphins produce the former types of trajectories to echolocate across shorter distances during movement. The frequency of occurrence of moving type A increased during the night, whereas that of type B increased in the late afternoon and that of the staying type increased during the daytime. These results indicate that dolphins moving at night tended to use short‐range echolocation, whereas during the day, they remained in relatively small areas and used long‐range sonar.     

Experimental transplants reveal strong environmental effects on the growth of non‐vascular epiphytes in Afromontane forests

Transplant studies can provide valuable information on the growth responses of epiphytic bryophytes and lichens to environmental factors. We studied the growth of six epiphyte species at three sites in moist Afromontane forests of Taita Hills, Kenya. With 558 pendant transplants, we documented the growth of four bryophytes and two lichens over 1 yr. The transplants were placed into the lower canopy of one forest site in an upper montane zone, and two forest sites in a lower montane zone. Several pendant moss species grew very well in the cool and humid environment of the upper montane forest, with some transplants more than doubling their biomass during the year. Conversely, all transplanted taxa performed poorly in the lower montane zone, presumably because of the unfavorable combination of ample moisture with excessive warmth and insufficient light which characterizes the lower canopy in dense lower montane forests. The results demonstrate that pendant transplants can be used for monitoring growth of non‐vascular epiphytes in tropical forests. The starting weight of 0.25 g for pendant transplants worked well and can be recommended for future studies.     

Dolphins Can Maintain Vigilant Behavior through Echolocation for 15 Days without Interruption or Cognitive Impairment

In dolphins, natural selection has developed unihemispheric sleep where alternating hemispheres of their brain stay awake. This allows dolphins to maintain consciousness in response to respiratory demands of the ocean. Unihemispheric sleep may also allow dolphins to maintain vigilant states over long periods of time. Because of the relatively poor visibility in the ocean, dolphins use echolocation to interrogate their environment. During echolocation, dolphin produce clicks and listen to returning echoes to determine the location and identity of objects. The extent to which individual dolphins are able to maintain continuous vigilance through this active sense is unknown. Here we show that dolphins may continuously echolocate and accurately report the presence of targets for at least 15 days without interruption. During a total of three sessions, each lasting five days, two dolphins maintained echolocation behaviors while successfully detecting and reporting targets. Overall performance was between 75 to 86% correct for one dolphin and 97 to 99% correct for a second dolphin. Both animals demonstrated diel patterns in echolocation behavior. A 15-day testing session with one dolphin resulted in near perfect performance with no significant decrement over time. Our results demonstrate that dolphins can continuously monitor their environment and maintain long-term vigilant behavior through echolocation.     

CHANGES IN CLICK SOURCE LEVELS WITH DISTANCE TO TARGETS: STUDIES OF FREE-RANGING WHITE-BEAKED DOLPHINS LAGENORHYNCHUS ALBIROSTRIS AND CAPTIVE HARBOUR PORPOISES PHOCOENA PHOCOENA

ABSTRACT

Probably all odontocetes use echolocation for spatial orientation and detection of prey. We used a four hydrophone “Y” array to record the high frequency clicks from free-ranging White-beaked Dolphins Lagenorhynchus albirostris and captive Harbour Porpoises Phocoena phocoena. From the recordings we calculated distances to the animals and source levels of the clicks. The recordings from White-beaked Dolphins were made in Iceland and those from Harbour Porpoises at Fjord & Baelt, Kerteminde, Denmark during prey capture. We used stringent criteria to determine which clicks could be defined as being on the acoustic axis. Two dolphin and nine porpoise click series could be used to track individual animals, which presumably focused on the array hydrophones or a fish right in front of the array. The apparent source levels of clicks in the individual tracks increased with range. One individual White-beaked Dolphin and three Harbour Porpoises regulate their output signal level to nearly compensate for one-way transmission loss while approaching a target. The other dolphin regulated the output differently. For most of the recordings the sound level at the target remains nearly constant and the echo level at the animal increases as it closes on the target.     

GEOGRAPHIC VARIATION IN RATES OF VOCAL PRODUCTION OF FREE-RANGING BOTTLENOSE DOLPHINS

Echolocation and whistle production, group sizes, and activities of free-ranging bottlenose dolphins were compared across four regions (Wilmington, NC Intracoastal Waterway [ICW]; Wilmington coastline; Southport, NC coastline; and Sarasota, FL inshore waters). Number of whistles and echolo-cation bouts differed significantly across sites. Dolphins whistled significantly more in Southport than in the other sites, independent of group size. Unlike at the other sites, dolphin vocalizations in Southport did not vary significantly across activities; this difference may be due to the fact that Southport animals were often found behind shrimp-trawling vessels, which may affect their behavior. Resident Sarasota dolphins vocalized significantly less than dolphins at the NC sites. At most sites, echolocation production per dolphin decreased as group size increased, supporting the idea that echolocation information is shared. In the ICW and Sarasota, echolocation production per dolphin was highest while feeding, indicating that echolocation is used in foraging. At all sites but Southport, whistle production per dolphin was highest while socializing, indicating that whistles are used in communication. Overall, these data show that dolphins have different vocal and activity patterns at different sites; thus, caution should be used when extrapolating results from one study site to another.     

Noise affects porpoise click detections – the magnitude of the effect depends on logger type and detection filter settings

Automatic click detectors and full-bandwidth sound recorders are widely used in passive acoustic monitoring of small cetaceans. Detection of these signals depends on a variety of factors, including signal to noise ratio. Passive acoustic monitoring is often used to study impact of underwater noise on small cetaceans, but as detection probability is affected by changes in signal to noise ratio, variable noise levels may affect conclusions drawn from these experiments. Therefore, we examine how different detectors and filters perform in varying ocean noise conditions. C-PODs and full-bandwidth recorders (Wildlife Acoustics, SM2M+) were deployed at two stations in an environment with fluctuating ambient noise for 42 days. Noise level and harbour porpoise (Phocoena phocoena) click trains simultaneously recorded on both loggers were compared. Overall, we found that porpoise click detections by the algorithm used to analyse full-band recorder data (Pamguard) paralleled detections by the C-POD. However, Pamguard detected significantly more clicks than the C-POD. A decrease in detections was seen for both loggers with increasing noise in the band 20 –160 kHz, in particular for levels above 100 dB re 1μPa rms. We also found that the Pamguard detection function changed the least over varying noise conditions when compared to the C-POD detectors. This study sheds light on the fact that inference of animal presence/absence or density that are based on echolocation cues (here, Porpoise Positive Minutes) shall account for the acoustic environments where probability of detecting signals may be affected by variability in ambient noise levels.     

Frequency-dependent variation in the two-dimensional beam pattern of an echolocating dolphin

Recent recordings of dolphin echolocation using a dense array of hydrophones suggest that the echolocation beam is dynamic and can at times consist of a single dominant peak, while at other times it consists of forward projected primary and secondary peaks with similar energy, partially overlapping in space and frequency bandwidth. The spatial separation of the peaks provides an area in front of the dolphin, where the spectral magnitude slopes drop off quickly for certain frequency bands. This region is potentially used to optimize prey localization by directing the maximum pressure slope of the echolocation beam at the target, rather than the maximum pressure peak. The dolphin was able to steer the beam horizontally to a greater extent than previously described. The complex and dynamic sound field generated by the echolocating dolphin may be due to the use of two sets of phonic lips as sound sources, or an unknown complexity in the sound propagation paths or acoustic properties of the forehead tissues of the dolphin.