How cells change their phenotype

Recent attention has focused on the remarkable ability of adult stem cells to produce differentiated cells from embryologically unrelated tissues. This phenomenon is an example of metaplasia and shows that embryological commitments can be reversed or erased under certain circumstances. In some cases, even fully differentiated cells can change their phenotype (transdifferentiation). This review examines recently discovered cases of metaplasia, and speculates on the potential molecular and cellular mechanisms that underlie the switches, and their significance to developmental biology and medicine.     

Macrophages rapidly internalize their tumor necrosis factor receptors in response to bacterial lipopolysaccharide

The effect of bacterial lipopolysaccharide (LPS) on macrophage receptors for tumor necrosis factor/cachectin (TNF-R) was studied. At equilibrium, iodinated recombinant human TNF alpha (rTNF alpha) bound to 1100 +/- 200 sites/cell on macrophage-like RAW 264.7 cells with a Kd of 1.3 +/- 0.1 x 10(-9) M. Preexposure of RAW 264.7 cells to 10 ng/ml LPS for 1 h at 37 degrees C resulted in complete loss of cell surface TNF alpha binding sites. 50% loss ensued after 1 h with 0.6 ng/ml LPS, or after 15 min with 10 ng/ml LPS. Complete loss of TNF alpha binding sites occurred without change in numbers of complement receptor type 3. No decrease in TNF-R followed preexposure to LPS at 4 degrees C, nor could LPS displace 125I-rTNF alpha from its binding sites. Although TNF-R disappeared from the surface of intact macrophages following exposure to LPS, specific TNF alpha binding sites were unchanged in permeabilized macrophages, indicating that TNF-R were rapidly internalized. Conditioned media from LPS-treated RAW 264.7 cells induced 30% down-regulation of TNF-R on macrophages from LPS-hyporesponsive mice (C3H/HeJ), suggesting that a soluble macrophage product may be responsible for a minor portion of the LPS effect. Additional evidence against endogenous TNF alpha being the major cause of TNF-R internalization was the rapid onset of the effect of LPS on TNF-R compared to the reported onset of TNF alpha production, the relatively high concentrations of exogenous rTNF alpha required to mimic the effect of LPS, and the inability of TNF alpha-neutralizing antibody to block the effect of LPS. LPS-induced down-regulation of TNF-R was complete or nearly complete not only in RAW 264.7 cells, but also in primary macrophages of both human and murine origin, was less marked in human endothelial cells, and was absent in human granulocytes and melanoma cells and mouse L929 cells. Thus, in situ, macrophages and some other host cells may be resistant to the actions of TNF alpha produced during endotoxinemia, because such cells may internalize their TNF-R in response to LPS before TNF alpha is produced.     

Scorpionfish rapidly change colour in response to their background

Urban areas are increasing worldwide, which poses threats to animal wildlife. However, in certain cases cities can provide refuges for endangered animals. The European green toad (Bufotes viridis) is one of such examples, which is known from cities throughout their distribution. In contrast, considerable areas of their former (primary) habitats have been degraded. The primary habitats of this species include steppes and wild river floodplains, both characterized by dynamic changes and the presence of open areas. We used available green toad observation data (2007–2020) to model the effects of land-use types on occurrence probability in the city of Vienna. Forest and densely populated areas were highly significantly negatively associated with green toad presence, while transformation/construction site areas showed a strong positive effect. Such occurrence pattern might be characteristic for early succession species, which depend on stochastic environmental disturbances (e.g., droughts and floods) in their primary habitats. We argue that urban landscape planning should appreciate the potential ecological value of open land in cities which is either in a transition phase or a permanent ‘wasteland’. Ecological managing of such landscape could vastly increase urban biodiversity.

     

Prenatal melatonin influences developmental changes of tachykinins in response to estradiol benzoate

The developmental changes of hypothalamic, pituitary, striatum and pineal gland tachykinin concentrations, as well as the response to estradiol-benzoate (EB) administration, were studied in offspring of control and melatonin (MEL) treated mother rats. Female rats were studied throughout different phases of the sexual development: infantile, prepubertal and pubertal periods, in the four following groups; control-offspring+vehicle; control-offspring+EB; MEL-offspring+vehicle; MEL-offspring+EB. Hypothalamic NKA in control-offspring+ vehicle was significantly increased only at 27 days of age and in control-offspring+EB at 27 days of age and during the infantile period. Hypothalamic SP levels increased similarly in control-offspring+EB during the infantile period but the EB influence was more pronounced with significantly increased concentrations at 32 days of age. Prenatal melatonin treatment produced major alterations in these patterns of postnatal development. In MEL-offspring+EB tachykinins concentrations in the hypothalamus during infantile and prepubertal periods did not increase, however at 37 days of age, they showed significantly higher values than in control-offspring+EB groups. The developmental pattern of pituitary NKA and SP concentrations in both; control-offspring+vehicle and control-offspring+EB groups, showed similar values from the infantile period to puberty, indicating that NKA and SP concentrations remained at similar levels independently of the sexual stage, only at 27 days of age in control-offspring+EB significantly increased values were found as compared to MEL-offspring+EB. Prenatal melatonin did not produce marked modifications, only significantly lower NKA and SP concentrations in MEL-offspring+EB group were observed at 25 days of age in comparison to control-offspring+EB group. Striatal NKA and SP concentrations showed a similar developmental pattern. In control-offspring, EB treatment produced NKA and SP decreased concentrations at the infantile period than in control-offspring+vehicle and significantly increased concentrations during the prepubertal period, then during the pubertal period NKA and SP concentrations decreased in control-group+EB. However, prenatal melatonin treatment reduced the levels of striatal NKA and SP during the prepubertal period after EB treatment and delayed until pubertal period the increase previously observed in control group during the prepubertal period. In MEL-offspring+vehicle group striatal concentrations of both tachykinins remained at low levels from infantile period until pubertal period. Prenatal melatonin and EB did not produce major alterations in SP pineal concentrations throughout sexual development. Plasma estradiol concentrations were significantly higher in the groups that received EB treatment than in those that received vehicle during prepubertal and juvenile periods in control-offspring+EB group and during the pubertal period in MEL-offspring+EB group. These data indicate that prenatal MEL treatment may influence NKA and SP developmental pattern from the infantile period until adulthood in the female rat.     

European post-glacial forests: compositional changes in response to climatic change

Abstract. Multivariate analysis of an extensive palyno-logical database for Europe has enabled reconstruction of broad-scale vegetation history. Whereas many major features of present vegetation patterns were established early in the Holocene, floristic composition of the forests has changed continuously up to the present day. For example, although ‘mixed deciduous forests’ had reached approximately their present extent in northwest Europe by 8000 B.P., Tilia peaked in abundance in these forests during the middle post glacial, whereas Pinus was most abundant in these forests during the early post-glacial and Fagus increased in abundance only in recent millennia. Pollen-climate response surfaces for major pollen taxa show how their distribution and abundance patterns relate to contemporary climate. Past forest-compositional changes were responses to climatic changes, the nature of which can be inferred from pollen-climate response surfaces. Post-glacial climate changes have been different in magnitude and direction in different regions of Europe. For example, in recent millennia the vegetation changes indicate decreasing summer temperatures in northern Europe but increasing summer temperatures in the Mediterranean region. The way in which vegetation responded to past climatic changes gives insight into the likely response of vegetation to future climate changes induced by the ‘greenhouse effect’.     

Modeling changes in predator functional response to prey across spatial scales

Extrapolation of predator functional responses from laboratory observations to the field is often necessary to predict predation rates and predator-prey dynamics at spatial and temporal scales that are difficult to observe directly. We use a spatially explicit individual-based model to explore mechanisms behind changes in functional responses when the scale of observation is increased. Model parameters were estimated from a predator-prey system consisting of the predator Delphastus catalinae (Coleoptera: Coccinellidae) and Bemisia tabaci biotype B (Hemiptera: Aleyrodidae) on tomato plants. The model explicitly incorporates prey and predator distributions within single plants, the search behavior of predators within plants, and the functional response to prey at the smallest scale of interaction (within leaflets) observed in the laboratory. Validation revealed that the model is useful in scaling up from laboratory observations to predation in whole tomato plants of varying sizes. Comparing predicted predation at the leaflet scale, as observed in laboratory experiments, with predicted predation on whole plants revealed that the predator functional response switches from type II within leaflets to type III within whole plants. We found that the magnitude of predation rates and the type of functional response at the whole plant scale are modulated by (1) the degree of alignment between predator and prey distributions and (2) predator foraging behavior, particularly the effect of area-concentrated search within plants when prey population density is relatively low. The experimental and modeling techniques we present could be applied to other systems in which active predators prey upon sessile or slow-moving species.     

Morphological variation in salamanders and their potential response to climate change

Despite the recognition that some species might quickly adapt to new conditions under climate change, demonstrating and predicting such a fundamental response is challenging. Morphological variations in response to climate may be caused by evolutionary changes or phenotypic plasticity, or both, but teasing apart these processes is difficult. Here, we built on the number of thoracic vertebrae (NTV) in ectothermic vertebrates, a known genetically based feature, to establish a link with body size and evaluate how climate change might affect the future morphological response of this group of species. First, we show that in old‐world salamanders, NTV variation is strongly related to changes in body size. Secondly, using 22 salamander species as a case study, we found support for relationships between the spatial variation in selected bioclimatic variables and NTV for most of species. For 44% of species, precipitation and aridity were the predominant drivers of geographical variation of the NTV. Temperature features were dominant for 31% of species, while for 19% temperature and precipitation played a comparable role. This two‐step analysis demonstrates that ectothermic vertebrates may evolve in response to climate change by modifying the number of thoracic vertebrae. These findings allow to develop scenarios for potential morphological evolution under future climate change and to identify areas and species in which the most marked evolutionary responses are expected. Resistance to climate change estimated from species distribution models was positively related to present‐day species morphological response, suggesting that the ability of morphological evolution may play a role for species’ persistence under climate change. The possibility that present‐day capacity for local adaptation might help the resistance response to climate change can be integrated into analyses of the impact of global changes and should also be considered when planning management actions favouring species persistence.     

The organizing principle: microenvironmental influences in the normal and malignant breast

The current paradigm for cancer initiation and progression rests on the groundbreaking discoveries of oncogenes and tumor suppressor genes. This framework has revealed much about the role of genetic alterations in the underlying signaling pathways central to normal cellular function and to tumor progression. However, it is clear that single gene theories or even sequential acquisition of mutations underestimate the nature of the genetic and epigenetic changes in tumors, and do not account for the observation that many cancer susceptibility genes (e.g. BRCA1, APC) show a high degree of tissue specificity in their association with neoplastic transformation. Therefore, the cellular and tissue context itself must confer additional and crucial information necessary for mutated genes to exert their influence. A considerable body of evidence now shows that cell-cell and cell-extracellular matrix (ECM) interactions are essential organizing principles that help define the nature of the tissue context, and play a crucial role in regulating homeostasis and tissue specificity. How this context determines functional integrity, and how its loss can lead to malignancy, appears to have much to do with tissue structure and polarity.     

Seasonality of the rocky intertidal amphipodOligochinus lighti in response to microenvironmental variables

Organisms of intertidal regions experience climatological factors of marine and non-marine origin. Ecological studies indicate that climatological factors of non-marine origin are of primary importance in determining the distribution and abundance of the gammarid amphipodOligochinus lighti as shown by a decrease in population density with increasing height in the intertidal and a decrease in the population density accompanying seasonal increases in exposure to non-marine climatic conditions. Non-marine climatic factors affectingOligochinus are changes in temperature, salinity or moisture content in the algal clump inhabited by the amphipod. The microclimate of the algal clump depends upon its position in the intertidal and on how its form modifies the climatic conditions occurring during exposure. The algal microclimate is related in a complex fashion to seasonal changes in the coastal macroclimate mediated by the irregular semidiurnal tidal cycles of the region. A regression model has been developed to predict population changes on the basis of climatic factors.Presented at the Seventh International Biometeorological Congress, 17–23 August 1975, College Park, Maryland, USA.     

Geographical range size of tropical plants influences their response to anthropogenic activities

Biodiversity patterns may be influenced by the species geographical range sizes, but this is rarely shown. We used a highly replicated and large-scale study in coastal Ecuador to determine for the first time the importance of latitudinal range size of plant species in their response to land-use activities. We examined herbaceous plant communities of five land-use types with decreasing anthropogenic disturbance (from the most intervened rice and pasture to the less intervened managed agroforest, abandoned agroforest, and forest) in a low and a high impact human-dominated landscape. All species were classified in four latitudinal range size quartiles, from the 25% species with the narrowest to the 25% with the widest range size. We found notable differences between patterns of total species richness and those of individual range size quartiles. Whereas total species richness was higher in more intervened land-use types, percentages of narrow-ranged species were significantly higher in less intervened land-use types. In contrast, percentages of wide-ranging species were higher in more intervened land-use types. Hence, responses of plant species to human activities were influenced by traits that determine their range sizes. An analysis of floristic similarity between land-use types revealed that narrow-ranged species were mainly preserved in forest fragments, but the other land-use types supported many unique narrow-ranged species and therefore made an important contribution to their preservation at the landscape level. Conservation efforts should combine protection of natural habitats with strategies to maintain a diversity of low-intensity land-use types, looking for win-win solutions or trade-offs between biodiversity conservation and human welfare in human-dominated landscapes.     

A paradigm for therapy-induced microenvironmental changes in solid tumors leading to drug resistance

Intrinsic alterations in the tumor microenvironment are known to contribute to various forms of drug resistance. For example, tumor hypoxia, due to abnormal or sluggish blood flow within areas of solid tumors, can result in both microenvironment-mediated radiation and chemotherapeutic drug resistance. In contrast, acquired resistance to chemotherapy is generally considered to be the result of the gradual selection of mutant subpopulations having genetic mutations and biochemical alterations responsible for the resistant phenotype. Here we present a paradigm for therapyinduced microenvironment-mediated acquired drug resistance. It is based on the results showing that tumor cells appear to be heterogeneous in their relative dependence on adjacent tumor-associated vasculature for survival. Some tumor cells are highly vessel dependent, whereas some are significantly less so, and thus can survive in more hypoxic regions of tumors, distal from such tumor vessels. Hence, it is possible that variant tumor cells that are less vessel dependent may therefore be selected for over time by successful antiangiogenic drug therapies. This results in loss of response or attenuated responses to the therapy. Preliminary evidence is summarized in support of this hypothesis, using paired human colon cancer (HCT116) cell lines that contain two copies of either the wild-type or the disrupted p53 tumor suppressor gene. The mutant cells were found to be less responsive to antiangiogenic therapy, compared to the wild-type cells, and could be progressively selected for in mixed cell populations. Because p53 inactivation can lead to resistance to hypoxia-mediated apoptosis, the results suggest that a protracted and successful antiangiogenic therapy may create more hypoxic tumor microenvironments, thereby creating the necessary conditions to accelerate the selection of mutant tumor cells that are more adept in surviving and growing in such environments. As such, consideration might be given to the combined use of bioreductive hypoxic cell cytotoxic drugs and angiogenesis inhibitors to prolong the efficacy of antiangiogenic therapeutics.     

Assessing the response of plant functional types to climatic change in tropical forests

Abstract. We propose and test a classification of plant functional types for tropical trees based on demography, growth form, phenology, and moisture requirements, using data from a 50-ha forest dynamics plot in Panama. Correlations among demographic variables for individual species - mortality, growth, and the tendency to colonize light gaps - were strong, and a single principal component (PC) accounted for a large fraction of the demographic variability. Most species - shade-tolerants - were clustered at the low end of the PC axis (low growth, low mortality), while the rest were continuously distributed over a wide range. Three demographic guilds could be defined from scores on this axis: we call these pioneer, building phase, and shade-tolerant trees, following earlier terminology. Leaf lifetime correlated negatively with the demographic axis, and there was a weak relationship between demography and moisture-preference: no species with high demographic scores also had high moisture requirements. There was no significant relationship between deciduousness and the demographic axis, but deciduousness was negatively correlated with leaf lifetime and moisture index. Altogether, 11 different combinations of demographic variables, deciduousness, moisture needs, and growth form (canopy vs. understory species) were identified. We evaluated how these functional types changed in abundance between 1982 and 1995. Because of a recent run of dry years and long dry seasons, we predicted that deciduous species, canopy species, pioneers, and drought-tolerant species would be increasing at the expense of their counterparts. Only one aspect of this prediction was borne out: moisture- demanding species declined sharply in abundance relative to drought-tolerant species. Neither deciduousness nor growth form was associated with population change, and pioneer species declined in abundance more often than shade-tolerants. The overall structure of the forest - the density of deciduous, pioneer, and understory species - did not change much, but the decline of the moisture-demanding guild indicates that a change in composition is preceding a structural change.     

Grassland plant functional groups exhibit distinct time-lags in response to historical landscape change

Recent studies have shown significant impacts of past landscapes on present distributions of species, and discussed the existence of an extinction debt. Understanding of the processes building an extinction debt is fundamentally important for explaining present and future diversity patterns of species in fragmented landscapes. Few empirical studies, however, have examined the responses of different plant functional groups (PFGs) to historical landscape changes. We aimed to reveal PFG-based differences in species’ persistence by focusing on their vegetative, reproductive, and dispersal traits. We examined whether the present distributions of PFGs of grassland species in the edges of remnant woodlands established on former semi-natural grasslands are related to the past surrounding landscapes at different time periods and spatial scales. The effects of past landscapes varied significantly among the PFGs. Richness of short, early flowering forbs and tall, late-flowering, wind-dispersed forbs showed significant positive relationships with the surrounding habitat proportions more than 50 years ago (the 1950s) and at wide spatial scales (more than 1 km²). Richness of tall, late-flowering forbs with unassisted and other types of dispersal mechanisms showed positive relationships with the surrounding habitat proportions in recent times (the 1970s) and at smaller spatial scales (0.25 km²). Our results suggested that plant growth form, flowering season and dispersal ability—with additional information on seed bank persistence—can be good indicators for identifying species’ specific sensitivity to surrounding habitat loss. Trait-based approaches can be useful for understanding present and future distributions of grassland species with different persistence strategies in human-modified landscapes.     

Modelling changes in species’ abundance in response to projected climate change

Aim Existing climate envelope models give an indication of broad scale shifts in distribution, but do not specifically provide information on likely future population changes useful for conservation prioritization and planning. We demonstrate how these techniques can be developed to model likely future changes in absolute density and population size as a result of climate change. Location Great Britain. Methods Generalized linear models were used to model breeding densities of two northerly‐ and two southerly‐distributed bird species as a function of climate and land use. Models were built using count data from extensive national bird monitoring data and incorporated detectability to estimate absolute abundance. Projections of likely future changes in the distribution and abundance of these species were made by applying these models to projections of future climate change under two emissions scenarios. Results Models described current spatial variation in abundance for three of the four species and produced modelled current estimates of national populations that were similar to previously published estimates for all species. Climate change was projected to result in national population declines in the two northerly‐distributed species, with declines for Eurasian curlew Numenius arquata projected to be particularly severe. Conversely, the abundances of the two southerly distributed species were projected to increase nationally. Projected maps of future abundance may be used to identify priority areas for the future conservation of each species. Main conclusions The analytical methods provide a framework to make projections of impacts of climate change on species abundance, rather than simply projected range changes. Outputs may be summarized at any spatial scale, providing information to inform future conservation planning at national, regional and local scales. Results suggest that as a consequence of climate change, northerly distributed bird species in Great Britain are likely to become an increasingly high conservation priority within the UK.     

From genotype to phenotype in bovine functional genomics

In past 5 years, the promise that came with genome sequencing has revolutionized the functional genomics research field at unprecedented manner. It would soon know what all known genes do, particularly genes involved in genetic improvement of animal health and increase food animal production. With the availability of full bovine genomic sequence, yet we still have a lot of daunting tasks on 'genotype-to-phenotype problem' particularly about the phenotypic variations and trying to predict what genes are likely to be involved, and improved integrated interactive database. This article outlined and discussed about the current status of bovine functional genomics, recent development in bovine genome databases particularly in annotation of bovine genome, bovine quantitative trait loci database and its potential impact to unveil the from genotype-to-phenotype problem.     

Defining functional biomes and monitoring their change globally

Biomes are important constructs for organizing understanding of how the worlds’ major terrestrial ecosystems differ from one another and for monitoring change in these ecosystems. Yet existing biome classification schemes have been criticized for being overly subjective and for explicitly or implicitly invoking climate. We propose a new biome map and classification scheme that uses information on (i) an index of vegetation productivity, (ii) whether the minimum of vegetation activity is in the driest or coldest part of the year, and (iii) vegetation height. Although biomes produced on the basis of this classification show a strong spatial coherence, they show little congruence with existing biome classification schemes. Our biome map provides an alternative classification scheme for comparing the biogeochemical rates of terrestrial ecosystems. We use this new biome classification scheme to analyse the patterns of biome change observed over recent decades. Overall, 13% to 14% of analysed pixels shifted in biome state over the 30‐year study period. A wide range of biome transitions were observed. For example, biomes with tall vegetation and minimum vegetation activity in the cold season shifted to higher productivity biome states. Biomes with short vegetation and low seasonality shifted to seasonally moisture‐limited biome states. Our findings and method provide a new source of data for rigorously monitoring global vegetation change, analysing drivers of vegetation change and for benchmarking models of terrestrial ecosystem function.     

中国北方草地植被物候变化及其对气候变化的响应

研究草地物候变化对揭示草地生态系统随全球气候变化的响应机制具有重要的科学意义.本研究基于1983—2015年的GIMMS NDVI 3g、气候和数字高程模型(DEM)数据,采用动态阈值法提取北方草地的物候信息[生长季始期(SOS)、生长季末期(EOS)、生长季长度(LOS)],分析北方草地物候的时空变化及LOS对气候的响应.结果表明: 88.9%的像元SOS发生在3月下旬到5月下旬(日序第90～150天),其中,68.1%的像元表现为提前,速率为-1.5～0 d·(32 a)^-1;79.7%的像元EOS发生在10月上旬到10月下旬(日序第270～300天),其中,70.3％的像元表现为推迟,速率为0～1.5 d·(32 a)^-1;LOS持续在100～140 d,其中,LOS变长的像元占73.7%,速率为0～1.5 d·(32 a)^-1.LOS与气温呈显著正相关(R=0.628),与降水呈弱负相关(R=-0.091),并存在明显的空间差异.以海拔2000 m为分界线,低于2000 m时,LOS与海拔呈弱正相关(R=0.235),高于2000 m时,LOS与海拔呈显著负相关(R=-0.861);海拔高于3000 m时,海拔每升高1000 m, LOS缩短约10 d.     

气候变化下西南地区植物功能型地理分布响应

以中国西南地区(云南、贵州、四川和重庆)为研究区,基于中国植被图划分植物功能型,筛选影响各植物功能型分布的主导环境因子,进而通过最大熵模型结合未来气候情景(2050年)预测西南地区植物功能型地理分布。结果表明:(1)根据植物冠层特征(针叶/阔叶、常绿/落叶)及对水分和温度的需求,结合研究区实际植被数据,筛选得到15类植物功能型,包含6类乔木、6类灌木和3类草本功能型;(2)影响西南地区热带乔木分布的主导因子为最冷月最低温度和年降水量(贡献率达90.3%),亚热带植物功能型分布主要受到温度变化影响(贡献率达41.7%),温带植物功能型则受降水因子的影响最大(贡献率约40.1%),高寒草甸草和高寒常绿阔叶灌木主要受温度和海拔因子影响,高寒落叶阔叶灌木受降水因子影响大;(3)随CO₂排放量增加,未来西南各植物功能型分布呈现不同变化,其中,热带常绿阔叶乔木适宜区逐渐扩大;亚热带落叶木本类植物功能型的高适宜区面积2050年(RCP8.5)增至10.3%,呈东移趋势;亚热带常绿木本和草本类植物功能型适宜区广(占研究区总面积86.5%),未来气候下分布呈不规则波动;温带植物功能...